mRNA_H-elongata_contig51463.12410.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51463.12410.1
Unique NamemRNA_H-elongata_contig51463.12410.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51463.12410.1 vs. uniprot
Match: A0A6H5KHP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP7_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.430e-32
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 LWALLNFLLPDVFDSAETFDQWFNLETDRSARDNVIKKLHTILRPFMLRRIKADVEKDLPPKKEAS 198
            LWALLNFLLPDVF SA+TFD WFNLETD+SARDNVIKKLHTILRPFMLRRIKADVEKDLPPKKEA+
Sbjct:  385 LWALLNFLLPDVFSSADTFDHWFNLETDKSARDNVIKKLHTILRPFMLRRIKADVEKDLPPKKEAT 450
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BLAST of mRNA_H-elongata_contig51463.12410.1 vs. uniprot
Match: A0A835ZE29_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE29_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.560e-26
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 LWALLNFLLPDVFDSAETFDQWFNLETDRSARDNVIKKLHTILRPFMLRRIKADVEKDLPPKKE 192
            LWALLNFLLPDVF SA+ FDQWFN+  D   ++NVIKKLHT+LRPFMLRRIKADVEKDLPPKKE
Sbjct:  284 LWALLNFLLPDVFSSADDFDQWFNVTGDSQQQENVIKKLHTVLRPFMLRRIKADVEKDLPPKKE 347
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BLAST of mRNA_H-elongata_contig51463.12410.1 vs. uniprot
Match: A0A7S2HFK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HFK5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.020e-25
Identity = 48/64 (75.00%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 LWALLNFLLPDVFDSAETFDQWFNLETDRSARDNVIKKLHTILRPFMLRRIKADVEKDLPPKKE 192
            LWALLNFLLPDVFDS++ FD+WF++  ++ ARDNVI+KLHT+LRPFMLRR+K+DVEKDLPPK E
Sbjct:   55 LWALLNFLLPDVFDSSDDFDEWFSMGGEQ-ARDNVIRKLHTVLRPFMLRRVKSDVEKDLPPKTE 117
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BLAST of mRNA_H-elongata_contig51463.12410.1 vs. uniprot
Match: A0A7S2BNM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNM0_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.580e-25
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 LWALLNFLLPDVFDSAETFDQWFNLETDRSARDNVIKKLHTILRPFMLRRIKADVEKDLPPKKE 192
            LWALLNFLLPDVF S+E FD+WF++     ARDNVIKKLHT+LRPFMLRR+K DV KDLPPK E
Sbjct:   20 LWALLNFLLPDVFGSSEDFDEWFSMG-GAEARDNVIKKLHTVLRPFMLRRVKTDVAKDLPPKTE 82
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BLAST of mRNA_H-elongata_contig51463.12410.1 vs. uniprot
Match: D7FV68_ECTSI (Probable chromatin remodelling complex ATPase chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV68_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 2.010e-23
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 LWALLNFLLPDVFDSAETFDQWFNLETD-RSARDNVIKKLHTILRPFMLRRIKADVEKDLPPKKE 192
            LWALLNFLLPDVF S+E FDQWFNLE D + A++N+I +LH ILRPFMLRR+KADVEK LPPK E
Sbjct:  428 LWALLNFLLPDVFSSSEQFDQWFNLEIDDKEAKENIIHQLHKILRPFMLRRLKADVEKSLPPKTE 492
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BLAST of mRNA_H-elongata_contig51463.12410.1 vs. uniprot
Match: A0A6A5ASE3_9STRA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ASE3_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.490e-23
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 LWALLNFLLPDVFDSAETFDQWFNLET-DRSARDNVIKKLHTILRPFMLRRIKADVEKDLPPKKE 192
            LWALLNFLLPDVF S+E FD+WFNL+T D  A+  +I +LH ILRPFMLRR+KADVEK LPPKKE
Sbjct:  197 LWALLNFLLPDVFSSSEQFDEWFNLDTEDEEAKKQMITQLHRILRPFMLRRLKADVEKSLPPKKE 261
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BLAST of mRNA_H-elongata_contig51463.12410.1 vs. uniprot
Match: A0A7S3XNC0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNC0_HETAK)

HSP 1 Score: 93.2 bits (230), Expect = 3.490e-23
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 LWALLNFLLPDVFDSAETFDQWFNLETDRS-ARDNVIKKLHTILRPFMLRRIKADVEKDLPPKK 189
            LWALLNFLLPDVF S+E FD+WFNL+ D + A+  +I++LH ILRPFMLRR+K+DVEK LPPKK
Sbjct:   43 LWALLNFLLPDVFSSSEQFDEWFNLDVDDAEAKRTMIQQLHKILRPFMLRRLKSDVEKALPPKK 106
[Close]
BLAST of mRNA_H-elongata_contig51463.12410.1 vs. uniprot
Match: A0A7S2IEN6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IEN6_9EUKA)

HSP 1 Score: 100 bits (248), Expect = 5.060e-23
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 LWALLNFLLPDVFDSAETFDQWFNLETDRSARDNVIKKLHTILRPFMLRRIKADVEKDLPPKKE 192
            LWA+LNFLLPD+FD A TFD WFNL+    A D+V+ +LH ILRPF+LRR+KADVEKDLPPK+E
Sbjct:  227 LWAMLNFLLPDIFDDASTFDSWFNLDQGDGASDDVLTQLHKILRPFLLRRLKADVEKDLPPKRE 290
[Close]
BLAST of mRNA_H-elongata_contig51463.12410.1 vs. uniprot
Match: A0A7S2SFZ0_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFZ0_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 6.960e-23
Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:    1 LWALLNFLLPDVFDSAETFDQWFNLETDRSARDNVIKKLHTILRPFMLRRIKADVEKDLPPK 186
            LWALLNFLLPDVF SA+ FD+WF++  +  AR+NVI+KLHT+LRPFMLRR+KADVEKDLPPK
Sbjct:  375 LWALLNFLLPDVFGSADDFDEWFSMGGEE-ARENVIRKLHTVLRPFMLRRVKADVEKDLPPK 435
[Close]
BLAST of mRNA_H-elongata_contig51463.12410.1 vs. uniprot
Match: A0A8J2SZN3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZN3_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 6.960e-23
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 LWALLNFLLPDVFDSAETFDQWFNLETDRSARDNVIKKLHTILRPFMLRRIKADVEKDLPPKKE 192
            LWALLNFLLPD+F S   F+ WF+L  D  A+DNV+KKLHT+LRPFMLRRIK DVE DLPPK+E
Sbjct:  347 LWALLNFLLPDIFSSEADFETWFSLGGDSGAKDNVVKKLHTVLRPFMLRRIKRDVEADLPPKRE 410
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51463.12410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHP7_9PHAE2.430e-3292.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZE29_9STRA1.560e-2681.25P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2HFK5_9STRA1.020e-2575.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2BNM0_9STRA2.580e-2575.00Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
D7FV68_ECTSI2.010e-2375.38Probable chromatin remodelling complex ATPase chai... [more]
A0A6A5ASE3_9STRA2.490e-2373.85Helicase ATP-binding domain-containing protein (Fr... [more]
A0A7S3XNC0_HETAK3.490e-2370.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2IEN6_9EUKA5.060e-2370.31Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S2SFZ0_9STRA6.960e-2375.81Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A8J2SZN3_9STRA6.960e-2371.88Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51463contigH-elongata_contig51463:2829..3928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue4.8e-20
Seed eggNOG ortholog2880.D7FV68
KEGG koko:K11654
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0385@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Hectar predicted targeting categorysignal peptide
Exons2
Model size202
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930842.1970448-CDS-H-elongata_contig51463:2829..29591622930842.1970448-CDS-H-elongata_contig51463:2829..2959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51463 2830..2959 -
1691679593.6247911-CDS-H-elongata_contig51463:2829..29591691679593.6247911-CDS-H-elongata_contig51463:2829..2959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51463 2830..2959 -
1622930842.2122874-CDS-H-elongata_contig51463:3857..39281622930842.2122874-CDS-H-elongata_contig51463:3857..3928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51463 3858..3928 -
1691679593.6362278-CDS-H-elongata_contig51463:3857..39281691679593.6362278-CDS-H-elongata_contig51463:3857..3928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51463 3858..3928 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51463.12410.1prot_H-elongata_contig51463.12410.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51463 2830..3928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51463.12410.1

>prot_H-elongata_contig51463.12410.1 ID=prot_H-elongata_contig51463.12410.1|Name=mRNA_H-elongata_contig51463.12410.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
LWALLNFLLPDVFDSAETFDQWFNLETDRSARDNVIKKLHTILRPFMLRR
IKADVEKDLPPKKEASD
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mRNA from alignment at H-elongata_contig51463:2829..3928-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51463.12410.1 ID=mRNA_H-elongata_contig51463.12410.1|Name=mRNA_H-elongata_contig51463.12410.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1100bp|location=Sequence derived from alignment at H-elongata_contig51463:2829..3928- (Himanthalia elongata Himel1 dioecious)
CTGTGGGCCTTGCTGAACTTCCTACTGCCAGACGTATTCGACAGTGCCGA
GACCTTCGATCAGTGGTTCAAGTGAGTCTTTTTTTTTTCGTTTCGAGAGT
TTTTTTACACTGCTGTATAAAACTCTTTGTAGAAAGGTCGGGTGTTTGAT
TCTCCTAGAGGCGGTTTTGAAGAGGACTTCGCGAGTCTGCTGTGCAGGGG
CGCGTGGACCGTTTACTGATATGCTAGACCGTTTACTGATACGCTAGACC
GTTTACTGATACGCTAGACCGTTTACTGATACGCTAGACCGTTTACTGAT
ACGCTAGACCGTTTACTGATACGCCACCAACAATATGGATGGGAGAAGCG
AAGAGGATCATAGGGTTTCTGTAAATAATGAGTAATGGTCATCGTAAATA
GTACCCTGCAAAATATTTTCTCGGAATATTCCCGGTTTCTTTACAGAGTA
GCTTTTCCCTTGCTTTGTCTTTTGGCTTGTACCTCAACAGTGGACAGTGG
AGTGTTCTATCTAGAAAGCTCAAGCATGTAAGAGCTACGCTTTCTTTCGG
GAAAAACGGAGAACCGCTTCTAAGTCGGATCGATCAATCCAATGAAAAGA
GGGCGGGGGAATCGCCTTAAACACCCCCGATTCGTGGATTTTTCATTCTA
CATTTTAGAGTCGTCAGGCAATTTTCCATAGCACACAATTTTCGTGAACG
GTAAATTTATATATAATGATCATTTTAAAGTAACAGAAAGAGGATTTTAA
ACTCAGCGATTTTTTATACAACGTTGTCTTCTAATTGTTGTTGGTCACAC
ATTTAGCAGAATGATATCAATCTTTTAGATATGTTCGGAACGGTGGCGTC
TCCCATATATAGATCAAGCTTGAGTTCAGCTTCACCCGACTAACAGCAGC
AATCGAAAACAACGCATGCCGGTATCCATTACCGCTCTGCCTGGTGGGTG
GGGGTGTCGACACCTTTAGTCTGGAGACGGACAGGAGCGCCAGAGATAAC
GTAATTAAGAAACTGCACACGATCCTGCGGCCGTTCATGCTCCGGCGCAT
CAAGGCGGACGTCGAGAAAGACCTACCTCCCAAGAAAGAGGCGAGCGACC
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Coding sequence (CDS) from alignment at H-elongata_contig51463:2829..3928-

>mRNA_H-elongata_contig51463.12410.1 ID=mRNA_H-elongata_contig51463.12410.1|Name=mRNA_H-elongata_contig51463.12410.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig51463:2829..3928- (Himanthalia elongata Himel1 dioecious)
CTGTGGGCCTTGCTGAACTTCCTACTGCCAGACGTATTCGACAGTGCCGA
GACCTTCGATCAGTGGTTCAACTGTGGGCCTTGCTGAACTTCCTACTGCC
AGACGTATTCGACAGTGCCGAGACCTTCGATCAGTGGTTCAATCTGGAGA
CGGACAGGAGCGCCAGAGATAACGTAATTAAGAAACTGCACACGATCCTG
CGGCCGTTCATGCTCCGGCGCATCAAGGCGGACGTCGAGAAAGACCTACC
TCCCAAGAAAGAGGCGAGCGACTCTGGAGACGGACAGGAGCGCCAGAGAT
AACGTAATTAAGAAACTGCACACGATCCTGCGGCCGTTCATGCTCCGGCG
CATCAAGGCGGACGTCGAGAAAGACCTACCTCCCAAGAAAGAGGCGAGCG
AC
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