mRNA_H-elongata_contig5138.12398.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: D8LRS3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRS3_ECTSI) HSP 1 Score: 368 bits (945), Expect = 1.310e-121 Identity = 199/269 (73.98%), Postives = 228/269 (84.76%), Query Frame = 1
Query: 4 NARRQKLEKMGEEILDLWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGCSEAERMAFKPILVTEEGFTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRFMAKGNVQERRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGERYMDAIQRTEDEFAALKDQMKAAKDAKKKEELWKLAMTSPAAKASNVVALGRGDTPRNNRK 810
N RR+KLEKMGEEILDLWQQL IGKDE+DVF SVDGMG QTL+AGETEL RLR+LK E+MG+L+ RAKIRELWDEIG SE ER+AFKP+LVTEEGFTD+LLQQHTQEAD L KFETM+HILEKIEERE LVEQR + ETSTKDPSR KG+ +ERR+Q++ LQ+ELE EKR+KNRLP LT SL+K IPQWE AQ + FLYKGERY+D +QR+EDE+ ALKDQ+KAAK A KKEEL K AM SPA K+ N VALGRG+TPR+ RK
Sbjct: 258 NTRREKLEKMGEEILDLWQQLDIGKDEQDVFAKSVDGMGLQTLEAGETELNRLRKLKLEKMGELVLASRAKIRELWDEIGYSETERLAFKPMLVTEEGFTDELLQQHTQEADKLATKFETMKHILEKIEERETLVEQRIEYETSTKDPSRLRPKGSQEERREQRRRLQEELETEKRIKNRLPMLTISLSKTIPQWENAQDSVFLYKGERYLDTLQRSEDEYLALKDQIKAAKAATKKEELRKHAMASPAPKSLNSVALGRGETPRSTRK 526
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: A0A1Z5JIC7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIC7_FISSO) HSP 1 Score: 138 bits (347), Expect = 1.620e-33 Identity = 90/239 (37.66%), Postives = 140/239 (58.58%), Query Frame = 1
Query: 7 ARRQKLEKMGEEILDLWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGCSEAERMAFKPILVT-EEGFTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRFMAKGNVQERRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGERYMDAIQRTEDEFAALKDQMKAAKDAKKKEE 720
AR+ +LE+MG I LW++LHI ++++ F SV G+G T++ G EL RL+ LK + +G LI+ R +I ELW++I R F P + E+ F D+LL+QH + A +L ++ E M+ IL IE REA+V +RF+ E KDP R +G R+ L +E + +R+K LP LT L + + +W+ F Y+GE+Y+D ++R E+E+ K + K KK+EE
Sbjct: 325 ARKVQLEEMGGAIAMLWEKLHIPEEDQIAFTESVQGLGLDTIEKGRRELQRLQILKSQMLGKLIQEARDRIVELWEQIDAPREYRDQFTPFKIQLEDCFDDKLLEQHEEYAYNLYSRLEQMKPILRIIERREAIVRERFEYEELQKDPDRLQQRGAAMTRQ-----LMEEEKMARRIKRELPRLTELLVEKLIEWKDLNGEDFQYRGEKYLDLMERQEEEWNQYKAEELQRKLKKKQEE 558
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: A0A1E7FEK5_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEK5_9STRA) HSP 1 Score: 123 bits (309), Expect = 2.960e-28 Identity = 86/255 (33.73%), Postives = 141/255 (55.29%), Query Frame = 1
Query: 10 RRQKLEKMGEEILDLWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGCSEAERMAFKPILVTEEG-FTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRFMAKGNVQERRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGERYMDAIQRTEDEFAALKD-----QMKAAKDAKKKEELWKLAMTSPAAK 756
R+ L++MGE+I LW+QL I ++++ F SV G+G T++ G+ EL RL+ LK + +G LI R I+ELW E + +R +F+P V +E + D+LL QH + L+ + E MR I + IE RE ++ +R + E KD R +G K L +E + +R+K LP LT L + + +W+ + F Y+GE Y++A+ R ++E+ K+ ++K +D + EE L + PA K
Sbjct: 376 RKDLLQEMGEQIAMLWEQLRIPQEDQQAFTDSVKGLGMDTIEKGKEELKRLKSLKGQMLGKLINEARENIQELWKETNGTHEQRKSFEPFTVRDEDMYDDELLDQHEEYIKILSHRLEKMRPINKLIERREDILRERMEYEELQKDSDRLKQRGAAMA-----KQLMEEEKMARRIKKDLPKLTKVLYEKLKEWKDSNGEDFQYRGEIYIEAMFRQDEEWLEYKNSEIQLKLKKKQDHQTFEENRHLGKSIPATK 625
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: I2CQQ7_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQQ7_NANGC) HSP 1 Score: 113 bits (283), Expect = 3.830e-27 Identity = 76/199 (38.19%), Postives = 115/199 (57.79%), Query Frame = 1
Query: 10 RRQKLEKMGEEILDLWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGCSEAERMAFKPILVTEEGFTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDP-SRFMAKGN--VQERRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVA 597
R +L+ +G++I LW +L + +++ F ASVDG+G TL+AGE EL RL LK+E++G LI RA+I LW+E+G ER F + V EG+ D+LLQ H +E L + E +R IL+ I +RE + +R + E K+ +R +G ++E + +KM +K VK LP LT L K + +WE A
Sbjct: 7 RADRLKTLGDQIAGLWDRLKVPDQDREAFSASVDGLGPDTLEAGERELRRLHSLKREKLGSLIAESRAQITGLWEEMGVGLVEREGFGALRVGPEGYCDELLQAHEEEIQCLTDRLEVLRPILKLIWKREEFLRERTEMEELQKNSKARLTDRGGKRIEELMRIEKM-------DKHVKKDLPILTERLRKRLLEWEKA 198
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: A0A024TNN6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TNN6_9STRA) HSP 1 Score: 114 bits (284), Expect = 3.840e-25 Identity = 76/224 (33.93%), Postives = 128/224 (57.14%), Query Frame = 1
Query: 52 LWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGCSE-AERMAFKPILVTEEGFTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRFMAKGNVQERRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGERYMDAIQRTEDEFAALKDQMKAAKDAKKKEE 720
LW +L + +E+D F + G+ + L+ E ELARL++LK+ R+GDL+ R IRELW + ++ A F + V TD+LL H E L+A+ + +L+ IE+RE +++ R E S K P+R + + + R ++L++E + + ++K+ LP LT L +P WE ++PFL +GERY+D I R + E++ K+ + KD K+E+
Sbjct: 228 LWDRLKVSPNERDEFLDACQGISADNLRQAEDELARLQQLKRARLGDLLLDVRGHIRELWSVLEVNDLAAATMFPAMQVATTDATDELLVIHEDELKRLDAQATARKALLKYIEKREEIIDDRSQYEASLKGPTRLIGR----QTRDTGRLLREE-KLQAKIKHDLPKLTKLLLDKLPAWEGEFASPFLVRGERYLDTIARVDAEYSKQKELDRLEKDRLKREK 446
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: A0A0B7NC82_9FUNG (Uncharacterized protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7NC82_9FUNG) HSP 1 Score: 101 bits (251), Expect = 1.510e-20 Identity = 69/207 (33.33%), Postives = 113/207 (54.59%), Query Frame = 1
Query: 25 EKMGEEILDLWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGCSEAERMAFKPILVTEEGFTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRFMAKGNVQERRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGERYMDAI 645
E++ + LW +LH+ + E DVF + G+ S+ L E ELA+L +LK+ER+GD I+ + ++ LWD + +E +R F+P + TD L+ + E L + E ++ILE IE+ L ++ + E +T DP+R KGN R ++L++E KR+ LP +T L + ++E +S PFL G+ Y D I
Sbjct: 253 EEIATSLKHLWNRLHVNQQECDVFLMANRGLTSKDLDKFENELAKLNQLKQERIGDFIQTAKEELASLWDRLYFNEKQRAQFQPDQCGDH-VTDVALEAYENEISRLQLELEDSKYILELIEKHMKLKKEIEEFEATTSDPNRLFGKGN----RDPGRLLREE-RFRKRISRELPKVTKELEGALLEYEALKSHPFLVYGKPYFDVI 453
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: A0A835YL47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL47_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 1.370e-19 Identity = 75/215 (34.88%), Postives = 108/215 (50.23%), Query Frame = 1
Query: 184 MGDLIRCKRAKIRELWDEIGCSEAE-RMAFKPILVTEEGFTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRF-----------------------MAKGNVQERRQQ------------QKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGERYMDAIQRTEDEFAALKDQMKAAKDAKKKEE 720
M L+ +R ++ LW E+G ++ + R F P + +D LQ H +E L E+MR +LE+I ERE L +R + T KDP+R + +G ++ R + QK L ELE EKRVK RLP LT L K + QWE A F + G+RY+D I+R+E+E+ A+KD +K AK+A KK E
Sbjct: 1 MSRLVVRERERLAALWLELGVTDEQGRAGFTPYTIDAGTCSDTELQAHVEEVKRLTLLLESMRPLLERIREREELCLERIEELTVEKDPNRLXXXXXXXXXXXXXXXXXXXKELCLERGYIRTRVENHPSRVKTRDPTLQKQLAAELEMEKRVKKRLPKLTEHLKKALAQWEDAHGGAFEWHGKRYLDRIERSEEEYNAVKDSVKLAKEAIKKLE 215
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: W4GQS5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GQS5_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.240e-17 Identity = 72/225 (32.00%), Postives = 119/225 (52.89%), Query Frame = 1
Query: 52 LWQQLHIGKD-EKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGC-SEAERMAFKPILVTEEGFTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRFMAKGNVQERRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGERYMDAIQRTEDEFAALKDQMKAAKDAKKKEE 720
LW +L++ + + DV +A G+ + L+ E EL RL+ LK+ ++G+L+ R +I LW + + A +F + V T++LL H E L+AK R +L+ IE+RE ++ +R E S DP R + G V R L +E + + ++K+ LP T L +P WE TPF+ +GERY+D I R + ++ K+ + KD K+E+
Sbjct: 229 LWDRLNVSPNVQGDVLDAC-RGISADALRHAEDELTRLQHLKRTKLGELLLDVRRQIAALWSSLEVDATAAASSFPAMQVPVVDATEELLALHESELKRLDAKATARRALLKYIEKREEIIGERSQYEASLHDPDRLI--GRVATAR-----LLREEKLQAKIKHDLPKWTKLLLDKLPAWEQEYCTPFVLRGERYLDTIARVDADYIKQKELDRMEKDRLKREK 445
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: A0A4D9D0U8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0U8_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 3.190e-17 Identity = 48/113 (42.48%), Postives = 72/113 (63.72%), Query Frame = 1
Query: 10 RRQKLEKMGEEILDLWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGCSEAERMAFKPILVTEEGFTDQLLQQHTQEADSLN 348
R +L+ +G++I LW +L + +++ F ASVDG+G TL+AGE EL RL+ LK+E++G LI RA+I LW+E+ ER F + V EG+ D+LLQ H +E + N
Sbjct: 276 RADRLKTLGDQIAGLWDRLKVPDQDREAFSASVDGLGPDTLEAGERELGRLQSLKREKLGSLIAESRAQITGLWEEMAVGLVEREGFGALRVGPEGYCDELLQAHEEETSATN 388
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Match: A0A418EVC5_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EVC5_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 5.580e-16 Identity = 73/234 (31.20%), Postives = 119/234 (50.85%), Query Frame = 1
Query: 22 LEKMGEEILDLWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKERMGDLIRCKRAKIRELWDEIGC-SEAERMAFKPILVTEEGFTDQLLQQHTQEADSLNAKFETMRHILEKIEEREALVEQRFDNETSTKDPSRFMAKGNVQERRQQQKMLQQELEAEKRVKNRLPALTSSLAKIIPQWEVAQSTPFLYKGERYMDAIQRTEDEFAALKDQMKAAKDAKKKEE 720
+E + + DL Q + DV +A G+ + L+ E EL RL+ LK+ ++G+L+ R +I LW + + A +F + V T++LL H E L+AK R +L+ IE+RE ++ +R E S DP R + G V R L +E + + ++K+ LP T L +P WE TPF+ +GERY+D I R + ++ K+ + KD K+E+
Sbjct: 300 IELISTRVADLIQLKVSPNVQGDVLDAC-RGISADDLRHAEDELTRLQHLKRAKLGELLLDVRRQIAALWSSLEVDATAAASSFPAMQVPVVDATEELLALHESELKRLDAKATARRALLKYIEKREEIIGERSQYEASLHDPDRLI--GRVATAR-----LLREEKLQAKIKHDLPKWTKLLLDKLPAWEQEYCTPFVLRGERYLDTIARVDADYIKQKELDRMEKDRLKREK 525 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5138.12398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5138.12398.1 >prot_H-elongata_contig5138.12398.1 ID=prot_H-elongata_contig5138.12398.1|Name=mRNA_H-elongata_contig5138.12398.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp MGEEILDLWQQLHIGKDEKDVFEASVDGMGSQTLKAGETELARLRELKKEback to top mRNA from alignment at H-elongata_contig5138:110..2669+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5138.12398.1 ID=mRNA_H-elongata_contig5138.12398.1|Name=mRNA_H-elongata_contig5138.12398.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2560bp|location=Sequence derived from alignment at H-elongata_contig5138:110..2669+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5138:110..2669+ >mRNA_H-elongata_contig5138.12398.1 ID=mRNA_H-elongata_contig5138.12398.1|Name=mRNA_H-elongata_contig5138.12398.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig5138:110..2669+ (Himanthalia elongata Himel1 dioecious)back to top |