mRNA_H-elongata_contig51372.12396.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51372.12396.1
Unique NamemRNA_H-elongata_contig51372.12396.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: D7FX15_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX15_ECTSI)

HSP 1 Score: 348 bits (893), Expect = 8.250e-111
Identity = 256/488 (52.46%), Postives = 283/488 (57.99%), Query Frame = 1
Query:   31 VFIRGADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARHGSSFAFKEEVLGDRTGGSNPRGSRSCLPQPKNPVLPPPCPMTPPTAYKGGLSN--------GVGGPTRR-----------------GPAPP---PQSSP------HTCRSVVQHATAVPGIGGEIGLGGNGRWAG-GAP--QGSPLQI--------GADGQPRXXXXXXXXXXXXXXXXXXXXXXXXSNERVFGPATPGS------CAVPG----MTRPLSASSGVFTLPASSK------SESATVLNLE--------RFGGGMPS----------GDPHHSLPKQQQQQQSWSGSNASSCRSTPVSGSYGGRSYWIKGRGSPLATPETLTNTPPVELSP 1257
            VFIRGADRR LQNLRV++R LVYAIGLSPNFAQ +TLKQ EYFGQYGEI KLVINHH+GV  DDPRYGSASAYITFRR+EDAWAA+CSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNP+CLYLHELGDE DRFTKDEVQLGLARHGSSFAFKEEVLGDR          +  P+P NPV PPPC M P    + G           GVGG  +                  GP PP   P S P      H CR+           G E       RWAG GAP   GSPL +        G+D +PR  XXXXXXXXXXXXXXXXXXX    N+   GP  P          VP        P    +  F L A++       S +  V  L          FGG              G+P++  P   Q  Q + G            GSYG  + W KGR SPLATPETL+NTPP+ELSP
Sbjct:   59 VFIRGADRRALQNLRVVRRNLVYAIGLSPNFAQVNTLKQPEYFGQYGEIAKLVINHHEGVPQDDPRYGSASAYITFRRQEDAWAAVCSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDEEDRFTKDEVQLGLARHGSSFAFKEEVLGDR--------GNTAAPRPTNPVFPPPCAMLPAPYRREGAGKPQRDGGNMGVGGRQQHQXXXDCEIYRHGNTGGNGPPPPKALPMSLPPSPQVCHPCRTRGGGCCGGAFPGAEAA-----RWAGSGAPLTPGSPLPLDGGGLSLSGSDERPRRRXXXXXXXXXXXXXXXXXXXGH-GNDGCGGPTAPAQQQYGHHAGVPNEYGEQMTPAGQQASHFELTAAAAARAGLGSPTGDVFRLPDHVFDRPFEFGGXXXXXXXXXXXXXXGNPYYPAP---QPAQGFGG------------GSYGSSAGWGKGRNSPLATPETLSNTPPLELSP 517          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A6H5JE06_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE06_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 7.340e-103
Identity = 251/509 (49.31%), Postives = 275/509 (54.03%), Query Frame = 1
Query:   22 QPSVFIRGADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTK---DEVQLGLARHGSSFAFKEEVLGDRTGGSNPRGSRSCLPQPKNPVLPPPCPMTPPTAYK---GGLSNGVGGP-----------------TRRGPAPPPQS--------SPHTCRSVVQHAT-------AVPGIGGEIGLGGNGRWAGG-AP--QGSPLQI--------GADGQPRXXXXXXXXXXXXXXXXXXXXXXXX--------------------------SNE------------RVFGPATPGSCAVPGMTRPLSASSGVFTLPASSKSESATVLNLERFGGGMPSG----------DPHHSLPKQQQQQQSWSGSNASSCRSTPVSGSYGGRSYWIKGRGSPLATPETLTNTPPVELSP 1257
            Q  VFIRGADRR LQNLRV++RTLVYAIGLSPNFAQ +TLKQ EYFGQYGEI KLVINHH+GV  DDPRYGSASAYITFRR+EDAWAA+CSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNP+CLYLHELGDE DRFTK   DEVQLGLARHGSSFAFKEEVLGDR G +  R       +P NPV PPPCPM PP  Y+   GG     GG                  T  G APPP          SPH C                V   GG        RWAGG AP   GSPL +        G+D +PR  XXXXXXXXXX                                      SNE              F      + AVPG     S    VF LP     + A   + E  GGG   G          +P++  P   Q  Q + G            G+YG  + W KGRGS LATPET +NT P+ LSP
Sbjct:   55 QKGVFIRGADRRALQNLRVVRRTLVYAIGLSPNFAQVNTLKQPEYFGQYGEIAKLVINHHEGVPQDDPRYGSASAYITFRRQEDAWAAVCSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDEEDRFTKAGSDEVQLGLARHGSSFAFKEEVLGDR-GDTAAR-------RPTNPVFPPPCPM-PPAPYRRAGGGKPQRDGGNMGGRYQHRREGELCRHNTAGGNAPPPPKAQPTLLPPSPHDCHPCRTRGXXXXXXXDCVDCFGGAFPGAEAARWAGGGAPLTPGSPLPLDGGSLSLSGSDERPRRRXXXXXXXXXXGATGTPGLVCHGHDACGGGXXXXXXXXXXXXYGHPAGVSNEYGGQRTAAGQQASHFELTAAAARAVPG-----SPPQDVFRLP-----DHAFDCSFEFGGGGRGGGRADDLATVDGNPYYPTP---QPAQDFDG------------GAYGSSAGWGKGRGSSLATPETQSNTSPLNLSP 529          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A836CMF8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF8_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.660e-55
Identity = 89/128 (69.53%), Postives = 100/128 (78.12%), Query Frame = 1
Query:   70 LRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEV 453
            LRVIQR LVY IGL P    A       YFGQYG I K+V+NHH GV+ DDPR+GSASAY+TF  KEDAW+AI +VDGF L GR +RASFGTTKYCNSFLR L CNN +CLYLHELGDE DRFTK+E+
Sbjct:    1 LRVIQRNLVYVIGLGPGIT-AGEAASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 127          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A7S4D5P1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5P1_HETAK)

HSP 1 Score: 198 bits (503), Expect = 4.370e-54
Identity = 106/208 (50.96%), Postives = 137/208 (65.87%), Query Frame = 1
Query:   43 GADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARHGSSFAFKEEVLGDRTGGSNPRGSRSCLPQPKNPVLPPPCPMTPPTAYKGGLSNGVGGPTRRGPA 666
              D+R L N+RVIQR LVY IGL  + A    L++ E+FGQYG I K+V+NH+ G  P DPR+GSASAYITF  K+DA +AI +VDG++  GR IRASFGTTKYCN+FLRNLPC NPECLYLHELGD  DR+T++E+Q G ++  +     + V+G+  GG +  G +       N V PPP     P    G ++   G P  +GPA
Sbjct:  105 SVDKRSLHNVRVIQRNLVYVIGLPLSIASEEDLRRGEFFGQYGRIHKVVVNHNHGAPPKDPRHGSASAYITFCHKDDARSAIQAVDGYQWDGRLIRASFGTTKYCNNFLRNLPCTNPECLYLHELGDSEDRYTREEIQTGASKTDAGPFGTQTVVGE--GGPSGTGKKVA-----NSVFPPPV-FDAPKRLPGSVN---GAPGAKGPA 301          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A7S2GN38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GN38_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.340e-48
Identity = 99/189 (52.38%), Postives = 126/189 (66.67%), Query Frame = 1
Query:   40 RGADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSAS----AYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARH--GSSFAFKEEVLGDRTGGSNPRGSRSCLPQPKNPVLPPP 588
            R  DR+ LQN+RV+QR LVY IG+SP+ A   TL++ EYFGQ+G+I K+V+N +      DPR  SAS    AYITF  KEDA A I +VDGF + GR +RASFGTTKYCNSFLRNL C NP+CLYLHELG+E D FTK+++Q G       S+     +V+   TG   P G+   +    NP++PPP
Sbjct:  144 RVPDRKNLQNIRVVQRNLVYVIGISPSIASEETLRRGEYFGQFGKIVKVVVNRNHSGGSGDPRNASASLSASAYITFAHKEDAKACIQAVDGFWMDGRNVRASFGTTKYCNSFLRNLSCTNPDCLYLHELGEEEDSFTKEQIQSGQNSQFKNSTEVGTTDVVVRVTGNGGPSGTGRRV---TNPIMPPP 329          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A482RNX1_9ARCH (RRM domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNX1_9ARCH)

HSP 1 Score: 160 bits (406), Expect = 9.170e-44
Identity = 78/165 (47.27%), Postives = 115/165 (69.70%), Query Frame = 1
Query:   49 DRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARHGSSFAFKEEVLGDRTGGSNPRGS 543
            DR+ L N RV+QR LVY  GL  +     TL++ EYFGQYG+++K+++  H+  +P    + + SAY+TF  KEDA A I +++GF + G  +RASFGTTKYCN+++R+LPC+NP+C+YLHELG+E DRFTK+E+QLG ++   S    + ++   TG   P G+
Sbjct:   37 DRKHLHNYRVVQRNLVYVTGLPASCGAEDTLRRPEYFGQYGKVSKVIV--HRNAAPP---HHTVSAYVTFCHKEDARACIQALEGFVVEGHVLRASFGTTKYCNNYIRHLPCSNPDCVYLHELGEEEDRFTKEEIQLGSSKLVLSPGRDQTLV---TGSGGPSGT 193          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: H3G5S5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5S5_PHYRM)

HSP 1 Score: 162 bits (409), Expect = 9.640e-44
Identity = 81/141 (57.45%), Postives = 100/141 (70.92%), Query Frame = 1
Query:   49 DRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLAR 471
            +R+ LQN+RV+QR LVY IGL   FA+   L+  E FGQYG+I K V+N    +S D     +ASAYITF  KEDA   I ++DG+ L G  +RASFGTTKYCN FLRN+ CNNP+CLYLHELGD+ D FTK+E+Q G  R
Sbjct:   92 NRKSLQNVRVMQRNLVYVIGLPVRFAEEDILRSNECFGQYGKIVKAVVNKSH-LSADRAN-ATASAYITFANKEDALCCIVAIDGYYLDGSMLRASFGTTKYCNFFLRNMQCNNPDCLYLHELGDDDDSFTKEEMQSGTRR 230          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A835YKN6_9STRA (RING/Ubox like zinc-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN6_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.720e-43
Identity = 77/129 (59.69%), Postives = 99/129 (76.74%), Query Frame = 1
Query:   40 RGADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDE 426
            R A +  L +L ++QR LVY +GL P  A    +++ E+FGQ+G+I K+V N +QG+ P D R+GSASAYI+F  +EDA A I SVDGF L GRT++A+FGTTKYCNSFLR+LPCNN EC+YLHELGDE
Sbjct:   84 RLARQHALLHLPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDE 212          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A7S1C198_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C198_9STRA)

HSP 1 Score: 171 bits (432), Expect = 9.760e-43
Identity = 90/186 (48.39%), Postives = 117/186 (62.90%), Query Frame = 1
Query:   49 DRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARHGSSFAFKEEVLGD-----RTGGSNPRGS-RSCLPQPKNPVLPPP 588
            DR  L N+RVI+R LVYA+GL P+ A    L++ E+FGQYG I K+V+N        DPR  SASAY+TF  KEDA A I ++DGF L GR IRAS+GT+KYC++F++N+ CNNPEC YLH +G+  D FTK E+Q G    G     K +  G      R+    P  S ++C+    NPV PPP
Sbjct:  138 DRSQLANMRVIRRNLVYAVGLPPSSASDDMLRRSEHFGQYGRIGKVVLNRSHIGGGGDPRRASASAYVTFVNKEDALACILALDGFYLDGRNIRASYGTSKYCSAFIKNVRCNNPECTYLHHMGEAEDTFTKQEIQAGYVTSGRDVLAKLQAGGGSCIRKRSXXXXPSSSGKACV----NPVFPPP 319          
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Match: A0A7S2Y5J5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5J5_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.280e-42
Identity = 92/222 (41.44%), Postives = 127/222 (57.21%), Query Frame = 1
Query:   49 DRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQLEYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDEVQLGLARHGSS-FAFKEEVLGD-------------RTGGSNPRG-----SRSCLPQPK--NPVLPPPCPMTPPTAYKGGLSNGVGGPT 651
            DR +L N+RVI+R LVYA+GL P       L++ +YFGQYG+I K+V+N  Q  S  DPR  + SAY+TF  KED  A I ++DGF + GR +RAS+GT+KYC++F++N+ CNNP+C YLHE+G   D FTK E+Q G    G    A +++++ +             R GG  P G     S    P P+   P  P P  + PPT      + G G  T
Sbjct:  118 DRTLLANMRVIRRNLVYAVGLPPTVGSEDNLRRADYFGQYGKIAKIVLNRTQATS-GDPRRATCSAYVTFVHKEDTLACILAMDGFHMDGRNVRASYGTSKYCSAFIKNVRCNNPDCTYLHEMGAAEDTFTKQEIQAGYVTSGRDVLARQQQIVAEQLKQAGSGPAPRKRIGGGGPSGTGKASSHPIFPAPEFDEPTKPSPTLVPPPTGIARASTAGTGNTT 338          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51372.12396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX15_ECTSI8.250e-11152.46RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JE06_9PHAE7.340e-10349.31RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CMF8_9STRA1.660e-5569.53Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S4D5P1_HETAK4.370e-5450.96Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S2GN38_9STRA1.340e-4852.38Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A482RNX1_9ARCH9.170e-4447.27RRM domain-containing protein (Fragment) n=1 Tax=a... [more]
H3G5S5_PHYRM9.640e-4457.45Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A835YKN6_9STRA1.720e-4359.69RING/Ubox like zinc-binding domain-containing prot... [more]
A0A7S1C198_9STRA9.760e-4348.39Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2Y5J5_9STRA1.280e-4241.44Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51372contigH-elongata_contig51372:1086..3515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score351.3
Seed ortholog evalue6.4e-94
Seed eggNOG ortholog2880.D7FX15
KEGG koko:K10643
KEGG Pathwayko03018,map03018
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000288,GO:0000289,GO:0000956,GO:0002682,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016070,GO:0016071,GO:0016567,GO:0016740,GO:0019222,GO:0019439,GO:0019538,GO:0019787,GO:0019941,GO:0022402,GO:0023052,GO:0030163,GO:0030330,GO:0031570,GO:0031571,GO:0032446,GO:0033554,GO:0034641,GO:0034655,GO:0035556,GO:0036211,GO:0042770,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045595,GO:0045637,GO:0045652,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051603,GO:0051716,GO:0051726,GO:0051865,GO:0060255,GO:0065007,GO:0070647,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0090068,GO:0090304,GO:0140096,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902806,GO:1902807,GO:1903047,GO:1903706,GO:2000026,GO:2000045,GO:2000134
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
EggNOG OGsCOG5175@1,KOG2068@2759
EC2.3.2.27
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size1284
Cds size1284
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51372.12396.1prot_H-elongata_contig51372.12396.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51372 1086..3515 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930840.6168897-CDS-H-elongata_contig51372:1085..14441622930840.6168897-CDS-H-elongata_contig51372:1085..1444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51372 1086..1444 -
1691679592.9414709-CDS-H-elongata_contig51372:1085..14441691679592.9414709-CDS-H-elongata_contig51372:1085..1444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51372 1086..1444 -
1622930840.6414657-CDS-H-elongata_contig51372:1630..24081622930840.6414657-CDS-H-elongata_contig51372:1630..2408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51372 1631..2408 -
1691679592.9522312-CDS-H-elongata_contig51372:1630..24081691679592.9522312-CDS-H-elongata_contig51372:1630..2408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51372 1631..2408 -
1622930840.6578972-CDS-H-elongata_contig51372:3368..35151622930840.6578972-CDS-H-elongata_contig51372:3368..3515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51372 3369..3515 -
1691679592.9608943-CDS-H-elongata_contig51372:3368..35151691679592.9608943-CDS-H-elongata_contig51372:3368..3515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51372 3369..3515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51372.12396.1

>prot_H-elongata_contig51372.12396.1 ID=prot_H-elongata_contig51372.12396.1|Name=mRNA_H-elongata_contig51372.12396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=428bp
QFQQQQQQPSVFIRGADRRVLQNLRVIQRTLVYAIGLSPNFAQASTLKQL
EYFGQYGEITKLVINHHQGVSPDDPRYGSASAYITFRRKEDAWAAICSVD
GFRLMGRTIRASFGTTKYCNSFLRNLPCNNPECLYLHELGDEGDRFTKDE
VQLGLARHGSSFAFKEEVLGDRTGGSNPRGSRSCLPQPKNPVLPPPCPMT
PPTAYKGGLSNGVGGPTRRGPAPPPQSSPHTCRSVVQHATAVPGIGGEIG
LGGNGRWAGGAPQGSPLQIGADGQPRPRRRRGQRGRRGSGGVGVGGGGGN
SNERVFGPATPGSCAVPGMTRPLSASSGVFTLPASSKSESATVLNLERFG
GGMPSGDPHHSLPKQQQQQQSWSGSNASSCRSTPVSGSYGGRSYWIKGRG
SPLATPETLTNTPPVELSPSGPYSPPPA
back to top

mRNA from alignment at H-elongata_contig51372:1086..3515-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51372.12396.1 ID=mRNA_H-elongata_contig51372.12396.1|Name=mRNA_H-elongata_contig51372.12396.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2430bp|location=Sequence derived from alignment at H-elongata_contig51372:1086..3515- (Himanthalia elongata Himel1 dioecious)
CAGTTTCAGCAGCAACAGCAGCAACCAAGCGTTTTCATCCGTGGAGCAGA TCGCCGAGTGCTGCAGAACCTTCGCGTCATCCAGCGAACCCTGGTATACG CTATCGGATTGTCGCCAAACTTCGCCCAGGCCAGCACGCTAAAGCAGGTG CGCATGCGCCGGGGTTTTTGTTTCCCTGGACCTTTAGCCTTAGCGGCTCG AGGCTTCAGTGCGGTGTCGCGCTTTCGACGGCTGGGTAGTAGTGGGGTGC GGAGGAACGGCACAGGAAAGAGTGGACGGCCTTCTGTTACATACCTGAAA GGCATAATTAGATTCGATTCTCAATGGGTTAGCAGCTATAGAGCATGTAA AGCTTGAATACGACCCCTCTCCCTCCCAACACCGTGTTCCTCTTCCCGAG GACGCGTGGTCAATTGTCGAAAACTAAATCGGGAAGAAAAAAAAGGGTAC GCCTCTCCTAACCCTCCTGACATTGTGTATGGTATCGTGTATGGTAGACT TTTATTTTTTGAACCCTCCGAACGCCCACGCCTTCTTAGCACCGTGAGAG AGAAGTCTAGAAGACCAACTGTCGTTAGTTTCGACTGTGGGCATTACTAC CCTAGAGCACTAAATCGAGGGCATTTCTTATTTATTTTATTTATTATGAA TATGTTGTTTGCTGTAATGAGCGAGTTCAGGGAATGACGTCTCCGCTCCT CCCGACACATATTGCGTACTCTTTTGCTATTTTCACAGTGGATGTTGGCG TTTTCTTCTGTACGTGACGGTCCTTCACCCCCCCCCCCCCTCTTTTTTTT CTTTTCTTTCTCTTCGTATGTTGTATTTTTTTNNNNNNNNNNTTTTTTTT TTTTCACAGTGTTTTTTTGCTTTTTTTTCTGTACTTTCCGTTCCTTCCCC CCCCCCCCCCTCTTTTTTTCCTCTCCTCCGTGAGCGTCTGTGTGATTTTT TTGTTGCATCCATGGAAAATAAGGCAAATAATTACGTTGCTCCGCCCTCC TCACGCCACGGACCCCACCCCACCCACCCTCCCTCCCTCCTTCTCGCGTT TTCGTTCTTGCGTCGCTACCCCCGAATTGAATCCTTTGGATTATTTATTT TTAAAAGCTGGAGTACTTTGGCCAATACGGCGAGATAACCAAGCTCGTGA TAAACCATCACCAGGGTGTGTCTCCCGACGACCCTCGGTACGGCAGCGCC AGCGCGTACATAACTTTCCGTCGGAAGGAGGACGCTTGGGCAGCGATATG TTCCGTGGACGGCTTCCGCCTCATGGGACGCACCATCCGTGCCAGCTTCG GCACTACGAAATACTGCAACAGCTTCCTCCGCAATCTCCCTTGTAACAAC CCCGAGTGCCTGTACCTGCACGAGCTCGGAGACGAGGGCGACCGCTTCAC GAAGGACGAGGTCCAGCTAGGTCTCGCCCGCCACGGCTCGAGCTTCGCCT TTAAAGAGGAAGTGCTCGGGGATCGCACCGGTGGGTCGAACCCGAGGGGC AGTCGCAGCTGCTTGCCGCAGCCAAAGAACCCGGTGCTGCCTCCACCCTG CCCCATGACACCACCTACGGCGTACAAAGGCGGGCTCTCCAACGGCGTTG GAGGTCCCACCCGACGCGGGCCTGCACCACCACCCCAGTCATCGCCTCAC ACGTGTCGGTCGGTGGTTCAACATGCCACAGCGGTGCCCGGCATCGGTGG CGAGATCGGCCTCGGGGGGAATGGAAGATGGGCCGGAGGAGCCCCACAGG GCTCCCCGTTGCAGATTGGCGCAGACGGCCAACCCAGACCGAGAAGACGT CGAGGTCAGAGGGGCCGGCGGGGGAGCGGCGGGGTCGGAGTTGGAGGAGG GGGCGGGAACTCTAACGAAAGAGTGTTCGGACCAGGTGGGATGGGTCTCA CAGCCCCAACGATAGACATCGGGATCGGCGGCAGTGGGGGTCCCGTGTTG GCGCGAACGTTGTCCATTCCCGTACCGCCCTTGCGCCCGATGGTGAACGA TTGTGACGCCGGTAGGTATAGTCAGGGCGTGGCGAGCCTAAGCCTGGACT CTGCGATAGGGCCAGGTCGAGCGACACCGGGCTCGTGCGCGGTTCCCGGC ATGACTAGGCCTTTGTCGGCGTCGTCGGGCGTATTCACTTTGCCGGCGTC GTCAAAAAGCGAATCGGCCACAGTGCTCAACCTCGAGCGCTTCGGTGGAG GGATGCCGAGCGGTGACCCTCATCACTCCTTGCCCAAGCAACAGCAGCAG CAGCAGTCCTGGAGCGGAAGCAACGCCAGCAGCTGCCGGAGCACCCCCGT GAGCGGTAGCTACGGTGGACGAAGTTACTGGATCAAGGGGCGTGGTTCCC CGTTGGCCACCCCTGAAACGCTCACCAATACCCCTCCCGTTGAGCTGTCG CCGTCTGGCCCGTACTCTCCGCCCCCAGCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig51372:1086..3515-

>mRNA_H-elongata_contig51372.12396.1 ID=mRNA_H-elongata_contig51372.12396.1|Name=mRNA_H-elongata_contig51372.12396.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2568bp|location=Sequence derived from alignment at H-elongata_contig51372:1086..3515- (Himanthalia elongata Himel1 dioecious)
CAGTTTCAGCAGCAACAGCAGCAACCAAGCGTTTTCATCCGTGGAGCAGA
TCGCCGAGTGCTGCAGAACCTTCGCGTCATCCAGCGAACCCTGGTATACG
CTATCGGATTGTCGCCAAACTTCGCCCAGGCCAGCACGCTAAAGCAGCAG
TTTCAGCAGCAACAGCAGCAACCAAGCGTTTTCATCCGTGGAGCAGATCG
CCGAGTGCTGCAGAACCTTCGCGTCATCCAGCGAACCCTGGTATACGCTA
TCGGATTGTCGCCAAACTTCGCCCAGGCCAGCACGCTAAAGCAGCTGGAG
TACTTTGGCCAATACGGCGAGATAACCAAGCTCGTGATAAACCATCACCA
GGGTGTGTCTCCCGACGACCCTCGGTACGGCAGCGCCAGCGCGTACATAA
CTTTCCGTCGGAAGGAGGACGCTTGGGCAGCGATATGTTCCGTGGACGGC
TTCCGCCTCATGGGACGCACCATCCGTGCCAGCTTCGGCACTACGAAATA
CTGCAACAGCTTCCTCCGCAATCTCCCTTGTAACAACCCCGAGTGCCTGT
ACCTGCACGAGCTCGGAGACGAGGGCGACCGCTTCACGAAGGACGAGGTC
CAGCTAGGTCTCGCCCGCCACGGCTCGAGCTTCGCCTTTAAAGAGGAAGT
GCTCGGGGATCGCACCGGTGGGTCGAACCCGAGGGGCAGTCGCAGCTGCT
TGCCGCAGCCAAAGAACCCGGTGCTGCCTCCACCCTGCCCCATGACACCA
CCTACGGCGTACAAAGGCGGGCTCTCCAACGGCGTTGGAGGTCCCACCCG
ACGCGGGCCTGCACCACCACCCCAGTCATCGCCTCACACGTGTCGGTCGG
TGGTTCAACATGCCACAGCGGTGCCCGGCATCGGTGGCGAGATCGGCCTC
GGGGGGAATGGAAGATGGGCCGGAGGAGCCCCACAGGGCTCCCCGTTGCA
GATTGGCGCAGACGGCCAACCCAGACCGAGAAGACGTCGAGGTCAGAGGG
GCCGGCGGGGGAGCGGCGGGGTCGGAGTTGGAGGAGGGGGCGGGAACTCT
AACGAAAGAGTGTTCGGACCAGCTGGAGTACTTTGGCCAATACGGCGAGA
TAACCAAGCTCGTGATAAACCATCACCAGGGTGTGTCTCCCGACGACCCT
CGGTACGGCAGCGCCAGCGCGTACATAACTTTCCGTCGGAAGGAGGACGC
TTGGGCAGCGATATGTTCCGTGGACGGCTTCCGCCTCATGGGACGCACCA
TCCGTGCCAGCTTCGGCACTACGAAATACTGCAACAGCTTCCTCCGCAAT
CTCCCTTGTAACAACCCCGAGTGCCTGTACCTGCACGAGCTCGGAGACGA
GGGCGACCGCTTCACGAAGGACGAGGTCCAGCTAGGTCTCGCCCGCCACG
GCTCGAGCTTCGCCTTTAAAGAGGAAGTGCTCGGGGATCGCACCGGTGGG
TCGAACCCGAGGGGCAGTCGCAGCTGCTTGCCGCAGCCAAAGAACCCGGT
GCTGCCTCCACCCTGCCCCATGACACCACCTACGGCGTACAAAGGCGGGC
TCTCCAACGGCGTTGGAGGTCCCACCCGACGCGGGCCTGCACCACCACCC
CAGTCATCGCCTCACACGTGTCGGTCGGTGGTTCAACATGCCACAGCGGT
GCCCGGCATCGGTGGCGAGATCGGCCTCGGGGGGAATGGAAGATGGGCCG
GAGGAGCCCCACAGGGCTCCCCGTTGCAGATTGGCGCAGACGGCCAACCC
AGACCGAGAAGACGTCGAGGTCAGAGGGGCCGGCGGGGGAGCGGCGGGGT
CGGAGTTGGAGGAGGGGGCGGGAACTCTAACGAAAGAGTGTTCGGACCAG
CGACACCGGGCTCGTGCGCGGTTCCCGGCATGACTAGGCCTTTGTCGGCG
TCGTCGGGCGTATTCACTTTGCCGGCGTCGTCAAAAAGCGAATCGGCCAC
AGTGCTCAACCTCGAGCGCTTCGGTGGAGGGATGCCGAGCGGTGACCCTC
ATCACTCCTTGCCCAAGCAACAGCAGCAGCAGCAGTCCTGGAGCGGAAGC
AACGCCAGCAGCTGCCGGAGCACCCCCGTGAGCGGTAGCTACGGTGGACG
AAGTTACTGGATCAAGGGGCGTGGTTCCCCGTTGGCCACCCCTGAAACGC
TCACCAATACCCCTCCCGTTGAGCTGTCGCCGTCTGGCCCGTACTCTCCG
CCCCCAGCCCGACACCGGGCTCGTGCGCGGTTCCCGGCATGACTAGGCCT
TTGTCGGCGTCGTCGGGCGTATTCACTTTGCCGGCGTCGTCAAAAAGCGA
ATCGGCCACAGTGCTCAACCTCGAGCGCTTCGGTGGAGGGATGCCGAGCG
GTGACCCTCATCACTCCTTGCCCAAGCAACAGCAGCAGCAGCAGTCCTGG
AGCGGAAGCAACGCCAGCAGCTGCCGGAGCACCCCCGTGAGCGGTAGCTA
CGGTGGACGAAGTTACTGGATCAAGGGGCGTGGTTCCCCGTTGGCCACCC
CTGAAACGCTCACCAATACCCCTCCCGTTGAGCTGTCGCCGTCTGGCCCG
TACTCTCCGCCCCCAGCC
back to top