mRNA_H-elongata_contig51295.12387.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51295.12387.1
Unique NamemRNA_H-elongata_contig51295.12387.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51295.12387.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.240e-19
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   82 IYADPLDWWRLNAVKFPLLAALTRRLLTIPASQAQSERVFSSAGQIVTQRRNRLSPENVELLIAL 276
            +Y DPLDWWR+    FP LA L RR+L IPA+QA+SER+FS AG IVT+ RN L+P  VELL+ L
Sbjct:  219 VYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLL 283          
BLAST of mRNA_H-elongata_contig51295.12387.1 vs. uniprot
Match: A0A151I7P1_9HYME (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I7P1_9HYME)

HSP 1 Score: 77.0 bits (188), Expect = 1.230e-16
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   34 ISTYIDIGIYPSISKIIYADPLDWWRLNAVKFPLLAALTRRLLTIPASQAQSERVFSSAGQIVTQRRNRLSPENVELLIAL 276
            I  Y    + P  + II     DWW+ N  +FP+LAA+ R+ L IPA+Q  SER+FS AG IVT  R++L PENVE L  L
Sbjct:    2 IKVYCAENVVPKTTDII-----DWWKCNVTRFPILAAVARQYLAIPATQVSSERLFSDAGNIVTATRSKLIPENVEKLCFL 77          
BLAST of mRNA_H-elongata_contig51295.12387.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 3.250e-16
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   76 KIIYADPLDWWRLNAVKFPLLAALTRRLLTIPASQAQSERVFSSAGQIVTQRRNRLSPENVELLIAL 276
            K ++ +PLD WR   +++PLLAAL RR+L IP+SQAQSERVFS+AG  VT  R+RL  ENVELL+ L
Sbjct:  477 KKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYL 543          
BLAST of mRNA_H-elongata_contig51295.12387.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 4.590e-16
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   82 IYADPLDWWRLNAVKFPLLAALTRRLLTIPASQAQSERVFSSAGQIVTQRRNRLSPENVELLIAL 276
            +   PL+WWR+ A ++P LA+L RR+L IPA QAQSERVFSSAG +VT+ R R+ PENV L++ L
Sbjct:  476 VRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFL 540          
BLAST of mRNA_H-elongata_contig51295.12387.1 vs. uniprot
Match: A0A1X7TGY6_AMPQE (BED-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TGY6_AMPQE)

HSP 1 Score: 80.5 bits (197), Expect = 1.140e-15
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   91 DPLDWWRLNAVKFPLLAALTRRLLTIPASQAQSERVFSSAGQIVTQRRNRLSPENVELLIAL 276
            DPL+WW+ N+ +FPLL  L RR L IP S   SER+FS AG +V++RRNR+SP+NV++++ L
Sbjct:  540 DPLEWWKENSCRFPLLKVLARRYLCIPGSSVPSERLFSQAGVLVSERRNRISPKNVDIILFL 601          
BLAST of mRNA_H-elongata_contig51295.12387.1 vs. uniprot
Match: UPI000EAB1B8F (zinc finger BED domain-containing protein 1-like n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI000EAB1B8F)

HSP 1 Score: 76.6 bits (187), Expect = 1.470e-15
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   97 LDWWRLNAVKFPLLAALTRRLLTIPASQAQSERVFSSAGQIVTQRRNRLSPENVELL 267
            + WW+ N V+FPLLAA+ R LL IPA+Q  SER+FS+AG IV ++R+RL  ENVE+L
Sbjct:  104 ISWWKANIVRFPLLAAVARNLLAIPATQVTSERLFSTAGNIVNEKRSRLCSENVEML 160          
BLAST of mRNA_H-elongata_contig51295.12387.1 vs. uniprot
Match: A0A1A8HG22_9TELE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius korthausae TaxID=1143690 RepID=A0A1A8HG22_9TELE)

HSP 1 Score: 74.3 bits (181), Expect = 1.620e-15
Identity = 34/82 (41.46%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   19 AKHPHISTYIDIGIYPSISKI-IYADPLDWWRLNAVKFPLLAALTRRLLTIPASQAQSERVFSSAGQIVTQRRNRLSPENVE 261
            +K P++    ++  Y   S + +  DPL+WWR++ V FPLLA L++R L IP +   +ERVFS+AG +VT +R+ L P++V+
Sbjct:    6 SKTPYVRAEEEMDKYLKASSLPLSEDPLNWWRVHEVTFPLLARLSKRYLCIPGTSVSAERVFSTAGDVVTAKRSTLKPQHVD 87          
BLAST of mRNA_H-elongata_contig51295.12387.1 vs. uniprot
Match: UPI001963A909 (zinc finger BED domain-containing protein 4-like n=2 Tax=Polypterus senegalus TaxID=55291 RepID=UPI001963A909)

HSP 1 Score: 75.9 bits (185), Expect = 1.660e-15
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 1
Query:   94 PLDWWRLNAVKFPLLAALTRRLLTIPASQAQSERVFSSAGQIVTQRRNRLSPENVELLIAL 276
            PL WWR N+ K+PLL+ L +  L+IPA+   SERVFS+AG IVT +R++L PENV++LI L
Sbjct:   76 PLTWWRENSSKYPLLSPLVKEYLSIPATSVPSERVFSTAGDIVTAQRSQLLPENVDMLIFL 136          
BLAST of mRNA_H-elongata_contig51295.12387.1 vs. uniprot
Match: UPI001113C14C (zinc finger BED domain-containing protein 1-like n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=UPI001113C14C)

HSP 1 Score: 75.1 bits (183), Expect = 1.800e-15
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   91 DPLDWWRLNAVKFPLLAALTRRLLTIPASQAQSERVFSSAGQIVTQRRNRLSPENVELLIAL 276
            DP +WW+ +  K+PL+A L ++ L+IPA+   SER FS+AG +VT +RN L+PENV +L+ L
Sbjct:   53 DPFEWWKSHEKKYPLIAELVKKYLSIPATSVSSERCFSTAGNVVTSKRNCLAPENVNMLVFL 114          
BLAST of mRNA_H-elongata_contig51295.12387.1 vs. uniprot
Match: E2BS40_HARSA (Zinc finger BED domain-containing protein 1 (Fragment) n=2 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BS40_HARSA)

HSP 1 Score: 73.6 bits (179), Expect = 2.150e-15
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 1
Query:   91 DPLDWWRLNAVKFPLLAALTRRLLTIPASQAQSERVFSSAGQIVTQRRNRLSPENVELLIAL 276
            DPL WW+ +   +P++AALT+  L I AS A SERVFS+AG IVT +RN LS ENV LLI L
Sbjct:    1 DPLKWWKAHENLYPMIAALTKVYLAILASSASSERVFSTAGNIVTAKRNCLSTENVNLLIFL 62          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51295.12387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE8.240e-1961.54Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A151I7P1_9HYME1.230e-1648.15Zinc finger BED domain-containing protein 1 (Fragm... [more]
D8LCS5_ECTSI3.250e-1661.19Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JHP9_9PHAE4.590e-1658.46Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A1X7TGY6_AMPQE1.140e-1554.84BED-type domain-containing protein n=1 Tax=Amphime... [more]
UPI000EAB1B8F1.470e-1559.65zinc finger BED domain-containing protein 1-like n... [more]
A0A1A8HG22_9TELE1.620e-1541.46Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
UPI001963A9091.660e-1557.38zinc finger BED domain-containing protein 4-like n... [more]
UPI001113C14C1.800e-1550.00zinc finger BED domain-containing protein 1-like n... [more]
E2BS40_HARSA2.150e-1559.68Zinc finger BED domain-containing protein 1 (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51295contigH-elongata_contig51295:3342..3620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue3.8e-15
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930839.5774503-CDS-H-elongata_contig51295:3341..36201622930839.5774503-CDS-H-elongata_contig51295:3341..3620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51295 3342..3620 +
1691679592.4098253-CDS-H-elongata_contig51295:3341..36201691679592.4098253-CDS-H-elongata_contig51295:3341..3620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51295 3342..3620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51295.12387.1prot_H-elongata_contig51295.12387.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51295 3342..3620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51295.12387.1

>prot_H-elongata_contig51295.12387.1 ID=prot_H-elongata_contig51295.12387.1|Name=mRNA_H-elongata_contig51295.12387.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
TTPRTVAKHPHISTYIDIGIYPSISKIIYADPLDWWRLNAVKFPLLAALT
RRLLTIPASQAQSERVFSSAGQIVTQRRNRLSPENVELLIAL*
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mRNA from alignment at H-elongata_contig51295:3342..3620+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51295.12387.1 ID=mRNA_H-elongata_contig51295.12387.1|Name=mRNA_H-elongata_contig51295.12387.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig51295:3342..3620+ (Himanthalia elongata Himel1 dioecious)
ACAACGCCGCGAACTGTGGCCAAACACCCCCATATATCGACATATATCGA CATCGGTATATATCCAAGTATCAGCAAGATCATCTACGCCGACCCGCTGG ATTGGTGGCGGTTGAACGCCGTTAAGTTCCCACTGCTAGCGGCGCTTACC CGGCGCCTTTTAACCATCCCGGCATCGCAGGCGCAGTCAGAGCGTGTGTT CTCGAGCGCTGGGCAGATTGTCACCCAAAGGCGCAACCGCCTATCACCGG AAAATGTAGAGCTTCTGATCGCGTTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig51295:3342..3620+

>mRNA_H-elongata_contig51295.12387.1 ID=mRNA_H-elongata_contig51295.12387.1|Name=mRNA_H-elongata_contig51295.12387.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig51295:3342..3620+ (Himanthalia elongata Himel1 dioecious)
ACAACGCCGCGAACTGTGGCCAAACACCCCCATATATCGACATATATCGA
CATCGGTATATATCCAAGTATCAGCAAGATCATCTACGCCGACCCGCTGG
ATTGGTGGCGGTTGAACGCCGTTAAGTTCCCACTGCTAGCGGCGCTTACC
CGGCGCCTTTTAACCATCCCGGCATCGCAGGCGCAGTCAGAGCGTGTGTT
CTCGAGCGCTGGGCAGATTGTCACCCAAAGGCGCAACCGCCTATCACCGG
AAAATGTAGAGCTTCTGATCGCGTTGTAAACAACGCCGCGAACTGTGGCC
AAACACCCCCATATATCGACATATATCGACATCGGTATATATCCAAGTAT
CAGCAAGATCATCTACGCCGACCCGCTGGATTGGTGGCGGTTGAACGCCG
TTAAGTTCCCACTGCTAGCGGCGCTTACCCGGCGCCTTTTAACCATCCCG
GCATCGCAGGCGCAGTCAGAGCGTGTGTTCTCGAGCGCTGGGCAGATTGT
CACCCAAAGGCGCAACCGCCTATCACCGGAAAATGTAGAGCTTCTGATCG
CGTTGTAA
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