mRNA_H-elongata_contig115660.1238.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115660.1238.1
Unique NamemRNA_H-elongata_contig115660.1238.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig115660.1238.1 vs. uniprot
Match: D8LIC9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIC9_ECTSI)

HSP 1 Score: 408 bits (1048), Expect = 1.980e-128
Identity = 223/345 (64.64%), Postives = 246/345 (71.30%), Query Frame = 1 
Query:    1 QLAERYTAVVRRPIDLTTVARRLRRGAYDHAAGRLRRDIIRIFSNCEKFNLTTSQLFVGIARDLRALFESQWAEAGLPVPGETPSCALRRRALLRSARYRLCWGAQLRGPLREAARQAVRAASMAALTAGGYGAAAVAEEFSLDVLPELAGDGEPSNEEWTLGLFAERACLALGLRATHPPPEEPENLGVGVLGALTGIVGLSGNGTCLALNNGNEKAGRDACAEWLFGPRQGDWLAAETA---------SGNTSTASAVVVKGAWLALDAALSPATVLVASHASRGTEFSSVWARPDKLVWAKQAKNVFWPAMLLWGSGTTAALREVNMCRVPPAFRGELEKQA 1008
            +LAERYT  VRRPIDLTTVARR+RRG YD++AGRLRRDI RIF+NCE+FN+ + QLFVGIAR LRALFES+WAE+ LP PGE+ + + RRRA LR+ARYRLCW AQLRGP                  AGG GA  V+ EFS D+LP L+G+GE SNEEWTLGLFAERACLALGLRA  PP                      G           EKAGRDACA+WLFGPRQ  WLAAETA         S     A+A VV  AW ALD ALSPATVLVAS+A+RGT FSSVWARPDKLVWAKQAKN FWPAMLLWGSGTTAAL+EVNM RVPPAFR ELEKQA
Sbjct:   26 ELAERYTVEVRRPIDLTTVARRVRRGTYDNSAGRLRRDIARIFTNCERFNMCSGQLFVGIARHLRALFESKWAESDLPYPGESQATSHRRRAALRTARYRLCWRAQLRGPXXXXXXXXXXXXXXXXXAAGGPGANGVSREFSEDILPMLSGEGEESNEEWTLGLFAERACLALGLRANQPPXXXXXXXXXXXXXXXXXXXXXXG-----------EKAGRDACADWLFGPRQAAWLAAETAPAGEKRDPASAPPPVATAAVVSAAWRALDGALSPATVLVASNAARGTPFSSVWARPDKLVWAKQAKNTFWPAMLLWGSGTTAALKEVNMGRVPPAFREELEKQA 359
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BLAST of mRNA_H-elongata_contig115660.1238.1 vs. uniprot
Match: A0A835ZC34_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC34_9STRA)

HSP 1 Score: 128 bits (321), Expect = 6.690e-29
Identity = 112/336 (33.33%), Postives = 145/336 (43.15%), Query Frame = 1 
Query:    1 QLAERYTAVVRRPIDLTTVARRLRRGAYDHAAGRLRRDIIRIFSNCEKFNLTTSQLFVGIARDLRALFESQWAEAGLPVPGETPSCALRRRALLRSARYRLCWGAQLRGPLREAARQAVRAASMAALTAGGYGAAAVAEEFSLDVLPELAGDGEPSNEEWTLGLFAERACLALGLRATHPPPEEPENLGVGVLGALTGIVGLSGNGTCLALNNGNEKAGRDACAEWLFGPRQGDWLAAETASGNTSTASAVVVKG-AWLALDAALSPATVLVASHASRGTEFSSVWARPDKLVWAKQAKNVFWPAMLLWGSGTTAALREVNMCRVPPAFRGELEKQ 1005
            ++A  Y   VRRP+DL+TVARRLRRG+Y  A G++ RDI RIF NCE+FN+  S+L++  AR L+AL +  +AE GL + GET +    R    R+ R+   W A L  P                 TA    A                       +  T+G     A  ALGL     PP                                   A   A AEW  G                  AS+V   G AW  +  AL+  T  +A   +RGTE SS+WARP  LVWAKQAKN FWPAM+L  +     L  +N  R+P A    LE++
Sbjct: 2283 EIAIAYARAVRRPMDLSTVARRLRRGSYPDA-GKVYRDISRIFRNCERFNVD-SRLYINTARHLQALIDGLFAETGLALSGETAAETAARATASRARRFAAVWHAALLPPF----------------TARVAAAXXXXXXXXXXXXXXXXXXXXXXQDGVTVGAAVLHARAALGL-----PPXXXXXX----------------------------HAQAAAEAEWAVG------------------ASSVARDGEAWGDVVNALAQLTPELAEAVARGTEISSIWARPCALVWAKQAKNTFWPAMMLGRAAQGEQLTPINAARMPAAIFNMLEQR 2549
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115660.1238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIC9_ECTSI1.980e-12864.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZC34_9STRA6.690e-2933.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115660contigH-elongata_contig115660:148..1329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score411.8
Seed ortholog evalue3.1e-112
Seed eggNOG ortholog2880.D8LIC9
KEGG koko:K09285
GOsGO:0000981,GO:0001101,GO:0003674,GO:0003700,GO:0006355,GO:0006357,GO:0006950,GO:0006970,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009891,GO:0009893,GO:0010029,GO:0010033,GO:0010035,GO:0010187,GO:0010468,GO:0010556,GO:0010557,GO:0010565,GO:0010604,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0033993,GO:0040008,GO:0042221,GO:0042304,GO:0045723,GO:0045834,GO:0045923,GO:0046889,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048580,GO:0048581,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051239,GO:0051241,GO:0051252,GO:0060255,GO:0062012,GO:0062013,GO:0065007,GO:0080090,GO:0097305,GO:0140110,GO:1900140,GO:1901700,GO:1901957,GO:1901959,GO:1903506,GO:2000026,GO:2000112,GO:2001141
EggNOG free text desc.positive regulation of cutin biosynthetic process
EggNOG OGs28IJ6@1,2QUXV@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons2
Model size1008
Cds size1008
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929670.5986981-CDS-H-elongata_contig115660:147..9601622929670.5986981-CDS-H-elongata_contig115660:147..960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115660 148..960 -
1691679113.4714744-CDS-H-elongata_contig115660:147..9601691679113.4714744-CDS-H-elongata_contig115660:147..960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115660 148..960 -
1622929670.6171896-CDS-H-elongata_contig115660:1134..13291622929670.6171896-CDS-H-elongata_contig115660:1134..1329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115660 1135..1329 -
1691679113.4807003-CDS-H-elongata_contig115660:1134..13291691679113.4807003-CDS-H-elongata_contig115660:1134..1329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115660 1135..1329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115660.1238.1prot_H-elongata_contig115660.1238.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115660 148..1329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115660.1238.1

>prot_H-elongata_contig115660.1238.1 ID=prot_H-elongata_contig115660.1238.1|Name=mRNA_H-elongata_contig115660.1238.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=336bp
QLAERYTAVVRRPIDLTTVARRLRRGAYDHAAGRLRRDIIRIFSNCEKFN
LTTSQLFVGIARDLRALFESQWAEAGLPVPGETPSCALRRRALLRSARYR
LCWGAQLRGPLREAARQAVRAASMAALTAGGYGAAAVAEEFSLDVLPELA
GDGEPSNEEWTLGLFAERACLALGLRATHPPPEEPENLGVGVLGALTGIV
GLSGNGTCLALNNGNEKAGRDACAEWLFGPRQGDWLAAETASGNTSTASA
VVVKGAWLALDAALSPATVLVASHASRGTEFSSVWARPDKLVWAKQAKNV
FWPAMLLWGSGTTAALREVNMCRVPPAFRGELEKQA
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mRNA from alignment at H-elongata_contig115660:148..1329-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115660.1238.1 ID=mRNA_H-elongata_contig115660.1238.1|Name=mRNA_H-elongata_contig115660.1238.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1182bp|location=Sequence derived from alignment at H-elongata_contig115660:148..1329- (Himanthalia elongata Himel1 dioecious)
CAGCTGGCGGAGCGGTACACTGCGGTGGTGCGGAGGCCGATCGACCTCAC
GACGGTCGCCCGCCGCCTTCGAAGGGGGGCGTACGACCACGCCGCAGGGC
GGCTTCGCCGAGACATTATCCGCATCTTCAGCAATTGCGAGAAGTTCAAC
CTTACTACCAGCCAGTTATTCGTGGGCATCGCCCGCGACTTGAGGGTGAG
AAAGAGAGAAGCGGTTGCGAATAACGGGGTTATTGCGCTCGGTGGAGGGG
CGGGACGCACTCGTGACCTTTGGTTGATGTAGCTTTGCTCGATTTTTTTT
GGTAGTGTTTGTACTCTTTGGTAGTTGTTAACCCACGCGCGCGCCCTTTC
CGAATGTTCACCTCGACAGGCGCTTTTCGAGTCTCAGTGGGCAGAGGCTG
GTCTTCCTGTTCCTGGAGAAACTCCATCCTGCGCTCTCCGCAGGCGAGCG
CTCCTCAGGAGCGCCCGATATCGTCTCTGCTGGGGGGCGCAACTACGTGG
ACCGTTGCGCGAGGCCGCGAGGCAAGCTGTCCGCGCTGCAAGCATGGCGG
CGTTGACAGCCGGCGGGTACGGCGCCGCGGCAGTCGCGGAGGAGTTCTCA
TTAGATGTGTTGCCGGAGCTCGCGGGGGACGGAGAGCCAAGCAATGAGGA
ATGGACCCTCGGGCTCTTCGCCGAGCGCGCGTGTCTGGCGCTGGGGCTGC
GCGCCACTCACCCGCCCCCTGAGGAGCCAGAAAATCTGGGTGTTGGCGTT
CTGGGAGCCCTGACGGGCATCGTGGGACTCAGCGGTAACGGAACCTGTCT
GGCACTAAACAACGGCAACGAAAAGGCCGGGCGCGACGCTTGCGCGGAAT
GGCTGTTCGGCCCCCGGCAGGGCGATTGGTTGGCGGCGGAGACGGCCTCG
GGGAACACTTCGACGGCCTCCGCGGTGGTTGTTAAGGGGGCTTGGCTGGC
GCTCGATGCCGCACTGTCCCCGGCAACCGTGCTGGTTGCGTCGCACGCCT
CAAGGGGCACGGAGTTCTCGTCCGTCTGGGCGCGACCGGATAAGCTGGTG
TGGGCGAAACAGGCTAAGAATGTTTTCTGGCCTGCGATGCTGCTCTGGGG
CAGCGGGACTACAGCGGCCTTGAGGGAGGTCAACATGTGTAGAGTTCCTC
CCGCGTTTCGGGGAGAGCTCGAAAAACAGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig115660:148..1329-

>mRNA_H-elongata_contig115660.1238.1 ID=mRNA_H-elongata_contig115660.1238.1|Name=mRNA_H-elongata_contig115660.1238.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2016bp|location=Sequence derived from alignment at H-elongata_contig115660:148..1329- (Himanthalia elongata Himel1 dioecious)
CAGCTGGCGGAGCGGTACACTGCGGTGGTGCGGAGGCCGATCGACCTCAC
GACGGTCGCCCGCCGCCTTCGAAGGGGGGCGTACGACCACGCCGCAGGGC
GGCTTCGCCGAGACATTATCCGCATCTTCAGCAATTGCGAGAAGTTCAAC
CTTACTACCAGCCAGTTATTCGTGGGCATCGCCCGCGACTTGAGGCAGCT
GGCGGAGCGGTACACTGCGGTGGTGCGGAGGCCGATCGACCTCACGACGG
TCGCCCGCCGCCTTCGAAGGGGGGCGTACGACCACGCCGCAGGGCGGCTT
CGCCGAGACATTATCCGCATCTTCAGCAATTGCGAGAAGTTCAACCTTAC
TACCAGCCAGTTATTCGTGGGCATCGCCCGCGACTTGAGGGCGCTTTTCG
AGTCTCAGTGGGCAGAGGCTGGTCTTCCTGTTCCTGGAGAAACTCCATCC
TGCGCTCTCCGCAGGCGAGCGCTCCTCAGGAGCGCCCGATATCGTCTCTG
CTGGGGGGCGCAACTACGTGGACCGTTGCGCGAGGCCGCGAGGCAAGCTG
TCCGCGCTGCAAGCATGGCGGCGTTGACAGCCGGCGGGTACGGCGCCGCG
GCAGTCGCGGAGGAGTTCTCATTAGATGTGTTGCCGGAGCTCGCGGGGGA
CGGAGAGCCAAGCAATGAGGAATGGACCCTCGGGCTCTTCGCCGAGCGCG
CGTGTCTGGCGCTGGGGCTGCGCGCCACTCACCCGCCCCCTGAGGAGCCA
GAAAATCTGGGTGTTGGCGTTCTGGGAGCCCTGACGGGCATCGTGGGACT
CAGCGGTAACGGAACCTGTCTGGCACTAAACAACGGCAACGAAAAGGCCG
GGCGCGACGCTTGCGCGGAATGGCTGTTCGGCCCCCGGCAGGGCGATTGG
TTGGCGGCGGAGACGGCCTCGGGGAACACTTCGACGGCCTCCGCGGTGGT
TGTTAAGGGGGCTTGGCTGGCGCTCGATGCCGCACTGTCCCCGGCAACCG
TGCTGGTTGCGTCGCACGCCTCAAGGGGCACGGAGTTCTCGTCCGTCTGG
GCGCGACCGGATAAGCTGGTGTGGGCGAAACAGGCTAAGAATGTTTTCTG
GCCTGCGATGCTGCTCTGGGGCAGCGGGACTACAGCGGCCTTGAGGGAGG
TCAACATGTGTAGAGTTCCTCCCGCGTTTCGGGGAGAGCTCGAAAAACAG
GCGGCGCTTTTCGAGTCTCAGTGGGCAGAGGCTGGTCTTCCTGTTCCTGG
AGAAACTCCATCCTGCGCTCTCCGCAGGCGAGCGCTCCTCAGGAGCGCCC
GATATCGTCTCTGCTGGGGGGCGCAACTACGTGGACCGTTGCGCGAGGCC
GCGAGGCAAGCTGTCCGCGCTGCAAGCATGGCGGCGTTGACAGCCGGCGG
GTACGGCGCCGCGGCAGTCGCGGAGGAGTTCTCATTAGATGTGTTGCCGG
AGCTCGCGGGGGACGGAGAGCCAAGCAATGAGGAATGGACCCTCGGGCTC
TTCGCCGAGCGCGCGTGTCTGGCGCTGGGGCTGCGCGCCACTCACCCGCC
CCCTGAGGAGCCAGAAAATCTGGGTGTTGGCGTTCTGGGAGCCCTGACGG
GCATCGTGGGACTCAGCGGTAACGGAACCTGTCTGGCACTAAACAACGGC
AACGAAAAGGCCGGGCGCGACGCTTGCGCGGAATGGCTGTTCGGCCCCCG
GCAGGGCGATTGGTTGGCGGCGGAGACGGCCTCGGGGAACACTTCGACGG
CCTCCGCGGTGGTTGTTAAGGGGGCTTGGCTGGCGCTCGATGCCGCACTG
TCCCCGGCAACCGTGCTGGTTGCGTCGCACGCCTCAAGGGGCACGGAGTT
CTCGTCCGTCTGGGCGCGACCGGATAAGCTGGTGTGGGCGAAACAGGCTA
AGAATGTTTTCTGGCCTGCGATGCTGCTCTGGGGCAGCGGGACTACAGCG
GCCTTGAGGGAGGTCAACATGTGTAGAGTTCCTCCCGCGTTTCGGGGAGA
GCTCGAAAAACAGGCG
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