mRNA_H-elongata_contig51197.12378.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51197.12378.1
Unique NamemRNA_H-elongata_contig51197.12378.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51197.12378.1 vs. uniprot
Match: D8LBH7_ECTSI (Chitin synthase 1, chs-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH7_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 7.830e-52
Identity = 81/110 (73.64%), Postives = 94/110 (85.45%), Query Frame = 1 
Query:    1 EAAMWDHVGESRFSLQTSCRGAQMMLKYKCLVEDGRLAQPPRGEGAMPPVLDSLDKTAAGIPALILLDTSPSEGLMVLFRQRRFDLRSCGLVDAVTCVPNSWLEFYGQRR 330
            E A+WD+VGES F +QT+CRGAQ M KY+CLVEDGRLAQPP GEGAMPP+L+S  KTAAG+PALILLD+SP+EGL+VL RQR FD+RSCG  D VTCVP SW+E Y QRR
Sbjct:  233 EFALWDNVGESHFGVQTTCRGAQCMFKYRCLVEDGRLAQPPVGEGAMPPLLNSFSKTAAGLPALILLDSSPNEGLLVLLRQRGFDVRSCGTADGVTCVPCSWIELYAQRR 342
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BLAST of mRNA_H-elongata_contig51197.12378.1 vs. uniprot
Match: A0A6H5KP28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP28_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 9.650e-50
Identity = 81/110 (73.64%), Postives = 94/110 (85.45%), Query Frame = 1 
Query:    1 EAAMWDHVGESRFSLQTSCRGAQMMLKYKCLVEDGRLAQPPRGEGAMPPVLDSLDKTAAGIPALILLDTSPSEGLMVLFRQRRFDLRSCGLVDAVTCVPNSWLEFYGQRR 330
            E A+WD+VGES F +QT+CRGAQ M KY+CLVEDGRLA+PP GEGAMPP+L+   KTAAG+PALILLD+SPSEGL+VL RQR FD+RSCG  D VTCVP SW+EFY QRR
Sbjct:  233 EFALWDNVGESHFGVQTTCRGAQCMFKYRCLVEDGRLAEPPIGEGAMPPLLNPFSKTAAGLPALILLDSSPSEGLLVLLRQRGFDVRSCGTADGVTCVPCSWIEFYAQRR 342
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51197.12378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBH7_ECTSI7.830e-5273.64Chitin synthase 1, chs-1 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KP28_9PHAE9.650e-5073.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51197contigH-elongata_contig51197:1860..2602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionchitin synthase 1, chs-1
Ec32 orthologEc-27_003940.1
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51197.12378.1prot_H-elongata_contig51197.12378.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51197 1869..2602 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930838.4048197-UTR-H-elongata_contig51197:1859..18681622930838.4048197-UTR-H-elongata_contig51197:1859..1868Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51197 1860..1868 +
1691679591.946554-UTR-H-elongata_contig51197:1859..18681691679591.946554-UTR-H-elongata_contig51197:1859..1868Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51197 1860..1868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930838.4205468-CDS-H-elongata_contig51197:1868..20531622930838.4205468-CDS-H-elongata_contig51197:1868..2053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51197 1869..2053 +
1691679591.9574578-CDS-H-elongata_contig51197:1868..20531691679591.9574578-CDS-H-elongata_contig51197:1868..2053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51197 1869..2053 +
1622930838.436935-CDS-H-elongata_contig51197:2463..26021622930838.436935-CDS-H-elongata_contig51197:2463..2602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51197 2464..2602 +
1691679591.9667916-CDS-H-elongata_contig51197:2463..26021691679591.9667916-CDS-H-elongata_contig51197:2463..2602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51197 2464..2602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51197.12378.1

>prot_H-elongata_contig51197.12378.1 ID=prot_H-elongata_contig51197.12378.1|Name=mRNA_H-elongata_contig51197.12378.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MWDHVGESRFSLQTSCRGAQMMLKYKCLVEDGRLAQPPRGEGAMPPVLDS
LDKTAAGIPALILLDTSPSEGLMVLFRQRRFDLRSCGLVDAVTCVPNSWL
EFYGQRR*
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mRNA from alignment at H-elongata_contig51197:1860..2602+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51197.12378.1 ID=mRNA_H-elongata_contig51197.12378.1|Name=mRNA_H-elongata_contig51197.12378.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=743bp|location=Sequence derived from alignment at H-elongata_contig51197:1860..2602+ (Himanthalia elongata Himel1 dioecious)
GAGGCTGCGATGTGGGATCACGTGGGAGAGTCGCGCTTCTCCCTGCAGAC
GTCCTGCCGAGGGGCGCAGATGATGCTGAAATACAAGTGCCTGGTGGAGG
ATGGTAGACTGGCGCAGCCCCCGCGTGGAGAGGGCGCTATGCCCCCAGTG
CTCGATTCCCTCGACAAGACCGCCGCGGGAATTCCGGCATTGATGTGAGC
GAGCGTCGCCCGACTCTCTTGGTTGAGGAGGAGCAGGGGATGGGCGGGGG
GGGGAAAGAGGGCTGTGTATATTTTCTTGGTAGGACAGATGATGCCTTAG
GGCCTTAGACTAAGTAACTACCGGTTACCGTGGTTAACGTTATATGGACA
TGTTAGGCGTCTTCGCCGTGTGGAGCCTCCCCCCCTCCCCCCAATCGTTG
TTTTGATTCAGCGGCGTTTTGGGGTGGGCGTTTGACGGCTGGCGATATCA
ATTAGGACGAGGGAAACCTCCCAGCATCTCGAAGGAGTGTTGATACCGAA
GCGCTCTCGCCTCTGTGACTCCCCTTCCATACAATCCAATCCCTTTCTCG
CGACGACTTTCGGCCTCTCCGACCTGCGTTGCGCTCGTTCGTTTGCGTCC
CAAGCCTCTTGGACACGTCGCCTAGCGAGGGCCTGATGGTGCTCTTTCGG
CAGCGACGTTTCGACCTGAGGTCATGCGGCTTGGTGGATGCGGTGACTTG
CGTGCCTAACTCATGGCTGGAGTTCTATGGGCAGAGGCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig51197:1860..2602+

>mRNA_H-elongata_contig51197.12378.1 ID=mRNA_H-elongata_contig51197.12378.1|Name=mRNA_H-elongata_contig51197.12378.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig51197:1860..2602+ (Himanthalia elongata Himel1 dioecious)
ATGTGGGATCACGTGGGAGAGTCGCGCTTCTCCCTGCAGACGTCCTGCCG
AGGGGCGCAGATGATGCTGAAATACAAGTGCCTGGTGGAGGATGGTAGAC
TGGCGCAGCCCCCGCGTGGAGAGGGCGCTATGCCCCCAGTGCTCGATTCC
CTCGACAAGACCGCCGCGGGAATTCCGGCATTGATATGTGGGATCACGTG
GGAGAGTCGCGCTTCTCCCTGCAGACGTCCTGCCGAGGGGCGCAGATGAT
GCTGAAATACAAGTGCCTGGTGGAGGATGGTAGACTGGCGCAGCCCCCGC
GTGGAGAGGGCGCTATGCCCCCAGTGCTCGATTCCCTCGACAAGACCGCC
GCGGGAATTCCGGCATTGATCCTCTTGGACACGTCGCCTAGCGAGGGCCT
GATGGTGCTCTTTCGGCAGCGACGTTTCGACCTGAGGTCATGCGGCTTGG
TGGATGCGGTGACTTGCGTGCCTAACTCATGGCTGGAGTTCTATGGGCAG
AGGCGGTGACCTCTTGGACACGTCGCCTAGCGAGGGCCTGATGGTGCTCT
TTCGGCAGCGACGTTTCGACCTGAGGTCATGCGGCTTGGTGGATGCGGTG
ACTTGCGTGCCTAACTCATGGCTGGAGTTCTATGGGCAGAGGCGGTGA
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