mRNA_H-elongata_contig51039.12363.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51039.12363.1
Unique NamemRNA_H-elongata_contig51039.12363.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51039.12363.1 vs. uniprot
Match: A0A6H5L2S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2S8_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 5.640e-28
Identity = 79/170 (46.47%), Postives = 97/170 (57.06%), Query Frame = 1 
Query:    1 APLEVLLEELKATAAAA---------ASEASWASLCFQETIVTELLESAIAERYPPRAEYVSRLTKMLLDDCEMAEEEAAEGLLRARMACMSSPLTDVAGGLDGETAFESYWFPLLRR------TGGCCTPRRHPRDFEEAFERGAFASFRVANRDNEVRWV-GVTCQGV 462
            APL+ L+ ELKA+AA +         +S + W SL FQE +  ELL+  IA  +PPR EYVSR+TK+LL+  E A +E AEGLL ARMA               ETAFES+WFP          TG  C+ +     F+E  E GAF SFRVANRDNEV +  GV C  V
Sbjct:   15 APLDALVGELKASAAESRREDETGLPSSSSLWTSLGFQERVAAELLDCPIAAEFPPRLEYVSRVTKVLLEAVETAGDEPAEGLLLARMA--------------DETAFESFWFPRRAALCDGFSTGSDCSAK----GFQEE-EGGAFFSFRVANRDNEVGFFSGVVCFAV 165
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BLAST of mRNA_H-elongata_contig51039.12363.1 vs. uniprot
Match: D7FXM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM3_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 7.930e-28
Identity = 80/160 (50.00%), Postives = 96/160 (60.00%), Query Frame = 1 
Query:    1 APLEVLLEELKATAAAAASE------------ASWASLCFQETIVTELLESAIAERYPPRAEYVSRLTKMLLDDCEMAEEEAAEGLLRARMACMSSPLTDVAGGLDGETAFESYWFPLLRRTGGC----CTPRRHPRDFEEAFERGAFASFRVANRDNEV 432
            APLE L+ ELKA+AA +  E            +SW SL FQE + TELL+  IA  + PR EYVSR+TK+LL+  E A +E AEGLL ARMAC+SS      GG   +TAFES+WFP  RR   C           + F+E  E G F SFRVANRDNEV
Sbjct:   15 APLEALVGELKASAAESRGEDETGLRSSTSSLSSWTSLGFQERVATELLDCPIAAEFTPRLEYVSRVTKVLLEAVETAGDEPAEGLLLARMACVSS--LRGGGGHSDDTAFESFWFP--RRAALCDIISTGSDYSAKGFQEE-EGGTFFSFRVANRDNEV 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51039.12363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2S8_9PHAE5.640e-2846.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXM3_ECTSI7.930e-2850.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51039contigH-elongata_contig51039:386..1570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue5.3e-25
Seed eggNOG ortholog2880.D7FXM3
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG2497@1,KOG2497@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size666
Cds size477
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51039.12363.1prot_H-elongata_contig51039.12363.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51039 386..1383 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930836.6065986-CDS-H-elongata_contig51039:385..5561622930836.6065986-CDS-H-elongata_contig51039:385..556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51039 386..556 +
1691679591.3610156-CDS-H-elongata_contig51039:385..5561691679591.3610156-CDS-H-elongata_contig51039:385..556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51039 386..556 +
1622930836.622806-CDS-H-elongata_contig51039:1077..13831622930836.622806-CDS-H-elongata_contig51039:1077..1383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51039 1078..1383 +
1691679591.3759263-CDS-H-elongata_contig51039:1077..13831691679591.3759263-CDS-H-elongata_contig51039:1077..1383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51039 1078..1383 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930836.6376162-UTR-H-elongata_contig51039:1383..15701622930836.6376162-UTR-H-elongata_contig51039:1383..1570Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51039 1384..1570 +
1691679591.386064-UTR-H-elongata_contig51039:1383..15701691679591.386064-UTR-H-elongata_contig51039:1383..1570Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51039 1384..1570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51039.12363.1

>prot_H-elongata_contig51039.12363.1 ID=prot_H-elongata_contig51039.12363.1|Name=mRNA_H-elongata_contig51039.12363.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
APLEVLLEELKATAAAAASEASWASLCFQETIVTELLESAIAERYPPRAE
YVSRLTKMLLDDCEMAEEEAAEGLLRARMACMSSPLTDVAGGLDGETAFE
SYWFPLLRRTGGCCTPRRHPRDFEEAFERGAFASFRVANRDNEVRWVGVT
CQGVCLHV*
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mRNA from alignment at H-elongata_contig51039:386..1570+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51039.12363.1 ID=mRNA_H-elongata_contig51039.12363.1|Name=mRNA_H-elongata_contig51039.12363.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1185bp|location=Sequence derived from alignment at H-elongata_contig51039:386..1570+ (Himanthalia elongata Himel1 dioecious)
GCTCCCCTCGAGGTTCTTCTGGAGGAGCTTAAGGCCACCGCGGCAGCGGC
GGCGTCAGAGGCTTCGTGGGCATCGCTTTGTTTCCAGGAGACAATCGTGA
CGGAACTGCTGGAGAGCGCCATCGCCGAGCGGTATCCCCCCCGCGCGGAA
TATGTTTCGCGGCTCACGAAGGTTCGCGCCCTCGTCCTCACCATCGTCCC
CCCGCCCAGATGTATGGCGAAGCCCTTAAAGAGGTCATGGGAAGCGGCCA
GATCGCACACGGGCGCTATGCACGCTACTCTGCCTGCACTCTAGCATCTA
GAGAACTTGTAGCATATTATGTCGTAGGTAGATGTAGCCGTAGATAACGC
CTGCCCCGTCTTTGCCCTGCCCCAAGTATTCATCGTCAATATCTGGATGA
TGACAGCAATAGAATAATATATAAAAAAGTGTCTCGTAACGGTTACGTCG
TGCTCCTGTAGCACTTCTCTGTGCTTCACTATTCGACTGTACTATGCTTG
ACCCACCACCGGCATAATGTGGCCTCACAGTCCCGAGCCCTGCTTTCGAC
CAGCTTTAATAGCGAGATGTATATTATGCATTTTATACTTCGAAAGTATT
ATATATGTAAGTGTCAATATTTGTGTTGGCAAAGATTGAAGGCTCTAATA
CCCCCCCCCCCACCCCCCCTCCCCCCGAAACGAAAAACGTAGATGCTGCT
GGATGACTGCGAGATGGCGGAAGAAGAGGCGGCCGAGGGTCTCCTACGCG
CCAGGATGGCGTGCATGTCGTCGCCTCTGACGGATGTGGCGGGGGGCCTC
GACGGTGAAACCGCTTTCGAGTCGTACTGGTTTCCGCTACTCCGGCGTAC
CGGCGGCTGCTGTACCCCCCGCAGGCACCCGAGGGATTTCGAAGAGGCGT
TCGAGAGGGGAGCATTCGCATCGTTCAGGGTCGCGAATCGAGACAACGAG
GTTCGTTGGGTCGGCGTTACTTGCCAGGGCGTTTGCTTGCACGTATAGGC
TAAAGGCACGCCACGATGGAGGCGTTCTGGCGGCCAGGTGCTACGGGAAA
CAACCGCGTTTACTGTTGATCGCCGATGTCGGAGCACTTCCTCTAAAATC
GATGGATCGGTAAATCCGGGGTCACGGGGATAGGCCTGCGTTTTTTTGTT
TTGTCGATGATGTATGTGTGCCGTAGAAATCTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig51039:386..1570+

>mRNA_H-elongata_contig51039.12363.1 ID=mRNA_H-elongata_contig51039.12363.1|Name=mRNA_H-elongata_contig51039.12363.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig51039:386..1570+ (Himanthalia elongata Himel1 dioecious)
GCTCCCCTCGAGGTTCTTCTGGAGGAGCTTAAGGCCACCGCGGCAGCGGC
GGCGTCAGAGGCTTCGTGGGCATCGCTTTGTTTCCAGGAGACAATCGTGA
CGGAACTGCTGGAGAGCGCCATCGCCGAGCGGTATCCCCCCCGCGCGGAA
TATGTTTCGCGGCTCACGAAGGCTCCCCTCGAGGTTCTTCTGGAGGAGCT
TAAGGCCACCGCGGCAGCGGCGGCGTCAGAGGCTTCGTGGGCATCGCTTT
GTTTCCAGGAGACAATCGTGACGGAACTGCTGGAGAGCGCCATCGCCGAG
CGGTATCCCCCCCGCGCGGAATATGTTTCGCGGCTCACGAAGATGCTGCT
GGATGACTGCGAGATGGCGGAAGAAGAGGCGGCCGAGGGTCTCCTACGCG
CCAGGATGGCGTGCATGTCGTCGCCTCTGACGGATGTGGCGGGGGGCCTC
GACGGTGAAACCGCTTTCGAGTCGTACTGGTTTCCGCTACTCCGGCGTAC
CGGCGGCTGCTGTACCCCCCGCAGGCACCCGAGGGATTTCGAAGAGGCGT
TCGAGAGGGGAGCATTCGCATCGTTCAGGGTCGCGAATCGAGACAACGAG
GTTCGTTGGGTCGGCGTTACTTGCCAGGGCGTTTGCTTGCACGTATAGAT
GCTGCTGGATGACTGCGAGATGGCGGAAGAAGAGGCGGCCGAGGGTCTCC
TACGCGCCAGGATGGCGTGCATGTCGTCGCCTCTGACGGATGTGGCGGGG
GGCCTCGACGGTGAAACCGCTTTCGAGTCGTACTGGTTTCCGCTACTCCG
GCGTACCGGCGGCTGCTGTACCCCCCGCAGGCACCCGAGGGATTTCGAAG
AGGCGTTCGAGAGGGGAGCATTCGCATCGTTCAGGGTCGCGAATCGAGAC
AACGAGGTTCGTTGGGTCGGCGTTACTTGCCAGGGCGTTTGCTTGCACGT
ATAG
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