prot_H-elongata_contig11563.1235.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11563.1235.1
Unique Nameprot_H-elongata_contig11563.1235.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length338
Homology
BLAST of mRNA_H-elongata_contig11563.1235.1 vs. uniprot
Match: A0A6H5K5X6_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X6_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 6.250e-64
Identity = 147/434 (33.87%), Postives = 182/434 (41.94%), Query Frame = 0
Query:    1 MVTVDRIYSSFIE--CDRDRSGGVSLEEYIIFCSKEGVPSSMARTMFFQADVDGNGQISFEEWTAMIKGRVGRDPKSFNCGGHHGLTIYTAPCSGITCNFCLGPISEGSPAAGCRRCDCDACAACSGI-TCPPPPP--------------------------------------------------------------------HRYTEAPA------------------------------------------------------TSSP---------------------------------LRTAPGILNCRGRHGLAPFRVKSR--VKCNWCQRHIAAGNVAVGCRMCDCDACIECAAVNL--------ASNSTSLLTCPGRHGLALTRTAVPGYSCDFCKEKVPLNVPIFSCRPCQLDACLSCVWNDHTK 266
            M + + +Y+ F +  CD D SGG+S+EEY+ FC +EG+P S+A T FFQAD+DGNGQISFEEWTAM+ GRVGRD  SFNCGGHHGL  Y A  +G+ C+FC  PI  G  A GCRRCDCDACA CSG+ T P PPP                                                                    ++   APA                                                      T +P                                 ++T P   +CR RHGL  + V     V C+WC   +  G  AVGCR CD D C++CAA +L         S S   LTCPG HGL +   A PG  CD C   V     +FSCR C +DAC+SC+W DH +
Sbjct:  136 MDSAEHLYTMFTQACCDSDGSGGISVEEYVYFCGREGIPRSVAETTFFQADIDGNGQISFEEWTAMMIGRVGRDEDSFNCGGHHGLVQYVAVFNGMACDFCGAPIQAGFFAKGCRRCDCDACATCSGLPTTPAPPPQLPPRDGLESGSASAPGQTKKKAKKKGKGGTKETVGTKKVKKVVATGEGKTKVKKQVAASGXXXXAKVNKXVAAPAXEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGTKVKKKATPAPRPPTEAPPPQQQPFQSRPPARVHVAAAPLPRASAWEVATTVQTWPDSFDCRLRHGLTLYTVPFGLPVACDWCGASLPLGYPAVGCRACDVDGCLDCAARSLMPSAGDGSVSGSALGLTCPGLHGLTMA-AAGPGCVCDLCGCGVGAGSKVFSCRLCDMDACVSCIWRDHRR 568          
BLAST of mRNA_H-elongata_contig11563.1235.1 vs. uniprot
Match: D7G0S5_ECTSI (Calcium dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S5_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 2.190e-39
Identity = 114/419 (27.21%), Postives = 150/419 (35.80%), Query Frame = 0
Query:    1 MVTVDRIYSSFIECDRDRSGGVSLEEYIIFCSKEGVPSSMARTMFFQADVDGNGQISFEEWTAMIKGRVGRDPKSFNCGGHHGLTIYTAPCSGITCNFCLGPISEGSPAAGCRRCDCDACAACSGI-TCPPPPPH-----------------------------------------------------------------------------------------------------RYTEAPATSSP------------------------------------------LRTAPGILNCRGRHGLAPFRVKSR--VKCNWCQRHIAAGNVAVGCRMCDCDACIECAAVNLASNSTSLLTCPGRHGLALTRTAVPGYSCDFCKEKVPLNVP-------IFSCRPCQLDACLSCVWNDHTK 266
            M + + +Y+ F ECD D SGG+S+EEY+ FCS+EGVP S+A T                 WTAM+ GRVGRD  SFNCGG+HGL  Y A  +G+ C+FC  PI  G  A GCRRCDCDACA CSG+ T P PPP                                                                                                      + T+A   ++P                                          ++T+    +CR RHGL  + V     V C+WC   +  G  AVGCR CD D C++CAA +L  ++                                           +FSCR C +DAC+SC+W DH +
Sbjct:  131 MDSAEHLYTMFTECDSDGSGGISIEEYVYFCSREGVPRSVAETTXXXXXXXXXXXXXXXXWTAMMMGRVGRDKDSFNCGGNHGLVQYVAVYNGMACDFCGTPIQAGFFAKGCRRCDCDACATCSGLPTTPAPPPQLPPRGGLESGSASAPGQPKKKVKKKVKGGTKETGGTKKVKKKVAASGGEAGKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGTKAKKKATPAARPXXXXXXXXXXXXQSIPPPLVHVGEAPLPRAFAWVEAAAVQTSSDSFDCRLRHGLTLYTVPFGLPVACDWCGASVPPGYPAVGCRACDVDGCLDCAARSLTPSAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSKVFSCRLCNMDACVSCIWRDHRR 549          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11563.1235.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5X6_9PHAE6.250e-6433.87EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7G0S5_ECTSI2.190e-3927.21Calcium dependent protein kinase n=1 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 6..34
e-value: 5.5
score: 11.8
coord: 40..68
e-value: 0.034
score: 23.3
IPR002048EF-hand domainPFAMPF00036EF-hand_1coord: 42..66
e-value: 6.1E-6
score: 25.4
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 36..71
score: 12.031
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 2..35
score: 5.057
NoneNo IPR availableGENE3D1.10.238.10coord: 3..68
e-value: 1.3E-11
score: 46.9
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 49..61
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 4..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11563contigH-elongata_contig11563:5502..7392 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11563.1235.1mRNA_H-elongata_contig11563.1235.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11563 3616..7939 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11563.1235.1 ID=prot_H-elongata_contig11563.1235.1|Name=mRNA_H-elongata_contig11563.1235.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=338bp
MVTVDRIYSSFIECDRDRSGGVSLEEYIIFCSKEGVPSSMARTMFFQADV
DGNGQISFEEWTAMIKGRVGRDPKSFNCGGHHGLTIYTAPCSGITCNFCL
GPISEGSPAAGCRRCDCDACAACSGITCPPPPPHRYTEAPATSSPLRTAP
GILNCRGRHGLAPFRVKSRVKCNWCQRHIAAGNVAVGCRMCDCDACIECA
AVNLASNSTSLLTCPGRHGLALTRTAVPGYSCDFCKEKVPLNVPIFSCRP
CQLDACLSCVWNDHTKLVNSGGAFSCRGNHQLKTIRIKIYSEIEAHKCSW
CRGNPVLGACMLRCDICCINVCNVCVANNPAEEPLPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair