mRNA_H-elongata_contig50946.12353.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50946.12353.1
Unique NamemRNA_H-elongata_contig50946.12353.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50946.12353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50946contigH-elongata_contig50946:1835..2879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size545
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930835.5448604-CDS-H-elongata_contig50946:1834..22041622930835.5448604-CDS-H-elongata_contig50946:1834..2204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50946 1835..2204 +
1691679590.9682176-CDS-H-elongata_contig50946:1834..22041691679590.9682176-CDS-H-elongata_contig50946:1834..2204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50946 1835..2204 +
1622930835.5635478-CDS-H-elongata_contig50946:2706..28791622930835.5635478-CDS-H-elongata_contig50946:2706..2879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50946 2707..2879 +
1691679590.9785337-CDS-H-elongata_contig50946:2706..28791691679590.9785337-CDS-H-elongata_contig50946:2706..2879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50946 2707..2879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50946.12353.1prot_H-elongata_contig50946.12353.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50946 1835..2879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50946.12353.1

>prot_H-elongata_contig50946.12353.1 ID=prot_H-elongata_contig50946.12353.1|Name=mRNA_H-elongata_contig50946.12353.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
SPRGHLTLTIFHKDRRKMTVEYLSSDVDTVLWELSAGLEASRLQHRLQVL
EAFVDLVGARVPSEAEAISKPQTRHLVRMLLGALCNPQYLERSWIKGLYN
IIGQSTKSERCPMFTVICGANLAGMVPSAANRQAQLTILRISRLLLEVVT
PDDATGNWPEWARKVVSTQAGILERVGSVGD
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mRNA from alignment at H-elongata_contig50946:1835..2879+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50946.12353.1 ID=mRNA_H-elongata_contig50946.12353.1|Name=mRNA_H-elongata_contig50946.12353.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1045bp|location=Sequence derived from alignment at H-elongata_contig50946:1835..2879+ (Himanthalia elongata Himel1 dioecious)
TCCCCCAGAGGTCATTTGACCCTGACGATTTTCCACAAAGATAGAAGAAA
AATGACTGTGGAATATCTTTCTTCGGACGTCGATACAGTTCTGTGGGAAC
TTAGCGCCGGTTTAGAGGCTTCCAGGCTCCAGCATCGACTCCAGGTTCTC
GAGGCCTTCGTTGACCTTGTTGGGGCCCGGGTGCCATCGGAGGCCGAAGC
GATTTCAAAGCCACAGACTCGGCATCTTGTCCGAATGTTGCTTGGTGCTT
TGTGCAATCCTCAATATCTGGAGCGTTCATGGATCAAAGGCTTATACAAT
ATCATTGGACAATCGACGAAATCCGAGCGTTGTCCAATGTTCACCGTAAT
TTGCGGTGCTAATCTCGCTGGTGAGTGGTACTTAGTGATTGTACAAAGAG
TCCGCAATGTAGAGAGTCCACCCTATGACCATAACGATGCAGCAGATCAT
GTACTCCTACTGAAGCGACTCTAGAGCAAACAAGGCACACCCCGTCTACA
TAGAACATATAATATGAGCTGTTACGAATAGCTAAAAGCATAAAATTTCG
ATCAAAGTTCGAAAGTAACTTTTCTGCGGACTACTGTAGACACTAACCTG
CAGTATTGTTGTTGTTGTTGGTCCCACTTTTAGCAGAAGGAAGAGCCGGA
TATGGTTGCCTTCTGCTCGTGGTCAGCTGAACAGGGAAAAATAGCTTTCC
CCTGTATTGGGGGACAGGGGAAAATTGTTCAGCTGATCGCCAGCAGAAGG
CAACTAAATCCGGTTGATCTTCTGCTAAATGTGTGACCAACAACAACAAC
TCCTCGCAGGAGGCACCGACCTAATAAAATTCATGAACTTAGAGGTCACC
ATATTTGTTCTCCTCAACCCAGGCATGGTACCGTCGGCAGCGAATAGGCA
AGCGCAGCTCACCATCCTGCGCATATCACGTCTTCTCCTCGAAGTTGTAA
CGCCCGACGATGCAACGGGAAATTGGCCGGAGTGGGCTCGTAAAGTTGTT
TCTACTCAGGCCGGCATCCTGGAGAGGGTAGGCTCAGTCGGCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig50946:1835..2879+

>mRNA_H-elongata_contig50946.12353.1 ID=mRNA_H-elongata_contig50946.12353.1|Name=mRNA_H-elongata_contig50946.12353.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig50946:1835..2879+ (Himanthalia elongata Himel1 dioecious)
TCCCCCAGAGGTCATTTGACCCTGACGATTTTCCACAAAGATAGAAGAAA
AATGACTGTGGAATATCTTTCTTCGGACGTCGATACAGTTCTGTGGGAAC
TTAGCGCCGGTTTAGAGGCTTCCAGGCTCCAGCATCGACTCCAGGTTCTC
GAGGCCTTCGTTGACCTTGTTGGGGCCCGGGTGCCATCGGAGGCCGAAGC
GATTTCAAAGCCACAGACTCGGCATCTTGTCCGAATGTTGCTTGGTGCTT
TGTGCAATCCTCAATATCTGGAGCGTTCATGGATCAAAGGCTTATACAAT
ATCATTGGACAATCGACGAAATCCGAGCGTTGTCCAATGTTCACCGTAAT
TTGCGGTGCTAATCTCGCTGTCCCCCAGAGGTCATTTGACCCTGACGATT
TTCCACAAAGATAGAAGAAAAATGACTGTGGAATATCTTTCTTCGGACGT
CGATACAGTTCTGTGGGAACTTAGCGCCGGTTTAGAGGCTTCCAGGCTCC
AGCATCGACTCCAGGTTCTCGAGGCCTTCGTTGACCTTGTTGGGGCCCGG
GTGCCATCGGAGGCCGAAGCGATTTCAAAGCCACAGACTCGGCATCTTGT
CCGAATGTTGCTTGGTGCTTTGTGCAATCCTCAATATCTGGAGCGTTCAT
GGATCAAAGGCTTATACAATATCATTGGACAATCGACGAAATCCGAGCGT
TGTCCAATGTTCACCGTAATTTGCGGTGCTAATCTCGCTGGCATGGTACC
GTCGGCAGCGAATAGGCAAGCGCAGCTCACCATCCTGCGCATATCACGTC
TTCTCCTCGAAGTTGTAACGCCCGACGATGCAACGGGAAATTGGCCGGAG
TGGGCTCGTAAAGTTGTTTCTACTCAGGCCGGCATCCTGGAGAGGGTAGG
CTCAGTCGGCGACGCATGGTACCGTCGGCAGCGAATAGGCAAGCGCAGCT
CACCATCCTGCGCATATCACGTCTTCTCCTCGAAGTTGTAACGCCCGACG
ATGCAACGGGAAATTGGCCGGAGTGGGCTCGTAAAGTTGTTTCTACTCAG
GCCGGCATCCTGGAGAGGGTAGGCTCAGTCGGCGAC
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