mRNA_H-elongata_contig50940.12352.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50940.12352.1
Unique NamemRNA_H-elongata_contig50940.12352.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50940.12352.1 vs. uniprot
Match: D7G730_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G730_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 9.090e-21
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 PGHVMDLIKEFNFLSIGVGGKIHCSLTNRDLPLRVDAIQQHINSKKLKKEREW 159
            P HVMDLIK+F+FLSIG+ GKIHC+LTNRDLPL   A+ QH+NSKKLKKEREW
Sbjct:   22 PVHVMDLIKQFDFLSIGLTGKIHCALTNRDLPLNSTAVHQHLNSKKLKKEREW 74
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BLAST of mRNA_H-elongata_contig50940.12352.1 vs. uniprot
Match: A0A6H5JNC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNC3_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.250e-20
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 PGHVMDLIKEFNFLSIGVGGKIHCSLTNRDLPLRVDAIQQHINSKKLKKEREW 159
            P HVMDLIK+F+FLSIG+ GKIHC+LTNRDLPL   A+ QH+NSKKLKKEREW
Sbjct:   22 PVHVMDLIKQFDFLSIGLRGKIHCALTNRDLPLNSAAVHQHLNSKKLKKEREW 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50940.12352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G730_ECTSI9.090e-2177.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNC3_9PHAE1.250e-2077.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50940contigH-elongata_contig50940:3677..3838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1e-14
Seed eggNOG ortholog2880.D7G730
Preferred nameSurf2
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005886,GO:0016020,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0070013,GO:0071944
EggNOG free text desc.Surfeit locus protein 2 (SURF2)
EggNOG OGs2A8IF@1,2QW1X@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSurfeit locus 2
Ec32 orthologEc-01_011240.1
Exons1
Model size162
Cds size150
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930835.4798079-UTR-H-elongata_contig50940:3676..36881622930835.4798079-UTR-H-elongata_contig50940:3676..3688Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50940 3677..3688 +
1691679590.9469073-UTR-H-elongata_contig50940:3676..36881691679590.9469073-UTR-H-elongata_contig50940:3676..3688Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50940 3677..3688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930835.4994802-CDS-H-elongata_contig50940:3688..38381622930835.4994802-CDS-H-elongata_contig50940:3688..3838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50940 3689..3838 +
1691679590.957989-CDS-H-elongata_contig50940:3688..38381691679590.957989-CDS-H-elongata_contig50940:3688..3838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50940 3689..3838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50940.12352.1prot_H-elongata_contig50940.12352.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50940 3689..3838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50940.12352.1

>prot_H-elongata_contig50940.12352.1 ID=prot_H-elongata_contig50940.12352.1|Name=mRNA_H-elongata_contig50940.12352.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MDLIKEFNFLSIGVGGKIHCSLTNRDLPLRVDAIQQHINSKKLKKEREW*
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mRNA from alignment at H-elongata_contig50940:3677..3838+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50940.12352.1 ID=mRNA_H-elongata_contig50940.12352.1|Name=mRNA_H-elongata_contig50940.12352.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig50940:3677..3838+ (Himanthalia elongata Himel1 dioecious)
CCTGGACACGTGATGGATTTGATCAAAGAGTTCAATTTCCTGAGCATTGG
GGTCGGTGGTAAGATCCACTGCTCCTTGACGAACCGAGACCTTCCGCTTC
GGGTGGACGCCATCCAGCAACACATCAACAGCAAGAAGCTCAAGAAAGAA
AGGGAGTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig50940:3677..3838+

>mRNA_H-elongata_contig50940.12352.1 ID=mRNA_H-elongata_contig50940.12352.1|Name=mRNA_H-elongata_contig50940.12352.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig50940:3677..3838+ (Himanthalia elongata Himel1 dioecious)
ATGGATTTGATCAAAGAGTTCAATTTCCTGAGCATTGGGGTCGGTGGTAA
GATCCACTGCTCCTTGACGAACCGAGACCTTCCGCTTCGGGTGGACGCCA
TCCAGCAACACATCAACAGCAAGAAGCTCAAGAAAGAAAGGGAGTGGTGA
ATGGATTTGATCAAAGAGTTCAATTTCCTGAGCATTGGGGTCGGTGGTAA
GATCCACTGCTCCTTGACGAACCGAGACCTTCCGCTTCGGGTGGACGCCA
TCCAGCAACACATCAACAGCAAGAAGCTCAAGAAAGAAAGGGAGTGGTGA
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