mRNA_H-elongata_contig50859.12346.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50859.12346.1
Unique NamemRNA_H-elongata_contig50859.12346.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: D7FIP5_ECTSI (Uncharacterized protein ycf23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP5_ECTSI)

HSP 1 Score: 450 bits (1157), Expect = 1.600e-154
Identity = 239/273 (87.55%), Postives = 258/273 (94.51%), Query Frame = 2
Query:   20 MKSTCFVLATTALSGTDSFCFSPPRMSGDVMAPFRAGKALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPAPAAVKAP 838
            M+STC + A  ALS  D+FCFSP RMSGDV+APF+AGKALKVISGLNKFDADLVSKVARAA AGGGTHIDIACDP+LVR AKAVSNVPVCVSAV+PELFPACV AGAEMVELGNFDCFYDQGLTF+AEDVLEMTRKTRALLP+ PLSVTVPHTLDL++QV LA ELE LGVDVIQTEGK+SL+PSKGG+QGAIERAAPTLAAAHAIS+AV+IPVMAASGLSDVTAPMALAAGA+GVGVGSAVNKLNSEIGMVAVVRAIASAMGLP P+AV+AP
Sbjct:    1 MRSTCVIAAAAALSCADAFCFSPARMSGDVLAPFQAGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPDLVRAAKAVSNVPVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGLTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPKPSAVEAP 273          
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: A0A835YK10_9STRA (Uncharacterized protein ycf23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK10_9STRA)

HSP 1 Score: 321 bits (823), Expect = 4.820e-104
Identity = 170/244 (69.67%), Postives = 206/244 (84.43%), Query Frame = 2
Query:   95 MSGDVMAPFRAGKALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVS-NVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPAPA 823
            MSGD +APFRA KALK+ISG+  FD++LV KVA AA AGG TH+DIA DPELV++AK  + +V +CVSA+EPEL   CV AGA+MVELGNFD FYDQG+ FTA+DV+ MT+ TRALLP  PLSVT+PH L +++QV LA+ L+ LGVDVIQTEGKYSL+PS GG+QG IERAAP LAA +AI+RAV+IPVM +SG+S+VTA MALAAGA GVGVGSAVNKLN+++ M+AVVRA+A AM LPAPA
Sbjct:   23 MSGDAIAPFRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAMDLPAPA 266          
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: A0A1Y1HWD8_KLENI (Uncharacterized protein ycf23 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWD8_KLENI)

HSP 1 Score: 285 bits (730), Expect = 1.520e-89
Identity = 153/236 (64.83%), Postives = 190/236 (80.51%), Query Frame = 2
Query:  104 DVMAPFRAGKALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAMGL 811
            DV+ PF   KA KVI+GL  F+ + V+++  AA  GG TH+DIACDPELV++A ++++VPVCVSAVEPELF   VAAGA MVE+GN+D FY +G TF AE+VL +TR+TR LLP++PLSVTVPHTL L +QV LAE LE  G D+IQTEG  S  P++ GV G IE+A+PTLAAA++ISRAV+IPVM ASG+SDVTA MA+AAGA GVGVGSA+NKLNS I M+A  RAIA+A+GL
Sbjct:   67 DVLRPFAEKKAFKVIAGLKNFNRENVAEIVAAAEQGGATHVDIACDPELVKLACSLTSVPVCVSAVEPELFVPAVAAGATMVEIGNYDPFYAEGRTFDAEEVLALTRRTRQLLPTIPLSVTVPHTLPLPDQVHLAELLENAGADIIQTEGGVSSAPTQAGVAGMIEKASPTLAAAYSISRAVSIPVMCASGISDVTASMAIAAGAAGVGVGSAINKLNSGIAMIAATRAIANALGL 302          
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: U5DGR7_9CHRO (Pyruvate/oxaloacetate carboxyltransferase n=1 Tax=Rubidibacter lacunae KORDI 51-2 TaxID=582515 RepID=U5DGR7_9CHRO)

HSP 1 Score: 280 bits (715), Expect = 3.070e-88
Identity = 149/233 (63.95%), Postives = 184/233 (78.97%), Query Frame = 2
Query:  107 VMAPFRAGKALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAM 805
            + A F    ALK+ISGLN F+ D V+ VARAA AGG T +DIA  PELVR A+   ++P+C SAVEPE F A VAAGA+++E+GNFDCFY QG  F AE+VL +TR TRALLP V LSVTVPH L L+ QV+LAE+L   G DVIQTEG  S +P+ GGV GAIE+AAPTLAAAH ISRAV++PV+ ASGL+DVTAP+A+AAGA G+GVGSAVN+LNS++ MVA VR++ +A+
Sbjct:    6 LQAAFARRNALKIISGLNNFNGDRVAAVARAAAAGGATFVDIAASPELVRRARQACDLPICTSAVEPEAFVAAVAAGADLIEIGNFDCFYAQGRRFEAEEVLALTRATRALLPQVMLSVTVPHVLPLDAQVQLAEDLVRAGADVIQTEGGTSSQPAHGGVLGAIEKAAPTLAAAHCISRAVDVPVLCASGLTDVTAPLAIAAGAAGIGVGSAVNRLNSKVAMVAAVRSLVAAL 238          
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: A0A3M9ZCT6_9CYAN (DUF561 domain-containing protein n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A3M9ZCT6_9CYAN)

HSP 1 Score: 273 bits (698), Expect = 1.060e-85
Identity = 145/226 (64.16%), Postives = 183/226 (80.97%), Query Frame = 2
Query:  134 ALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAMGL 811
            ALKVISGL  FDA  V+ V RAA  GG T +DIA DP+LVR++K ++ +PVCVSAVEP+ F A VAAGA+++E+GNFD FY QG  F A +VLE+TR+TRALLP++ LSVTVPH L+L++QV+LAEEL   G D+IQTEG  S +P+  G  G IE+AAPTLAAAHAISRAV++PV+ ASGLSDVTAPMA+AAGA G+GVGSA+N+LN E+ MVAVVR++  A+ +
Sbjct:   16 ALKVISGLTNFDAVRVAAVVRAADRGGATFVDIAADPDLVRLSKQLTQLPVCVSAVEPQQFVAAVAAGADLIEIGNFDAFYAQGKRFEAAEVLELTRQTRALLPNIMLSVTVPHILELDQQVQLAEELVQAGADLIQTEGGTSSQPTHAGTLGLIEKAAPTLAAAHAISRAVSVPVLCASGLSDVTAPMAIAAGAAGIGVGSAINRLNDELAMVAVVRSLVEALAI 241          
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: L1K0A3_GUITC (Uncharacterized protein ycf23 n=2 Tax=Guillardia theta TaxID=55529 RepID=L1K0A3_GUITC)

HSP 1 Score: 273 bits (698), Expect = 1.090e-85
Identity = 151/236 (63.98%), Postives = 183/236 (77.54%), Query Frame = 2
Query:  101 GDVMAPFRAGKALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALL-PSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAM 805
            GDVM PF   +ALK+ISGLN FD   V+ V RAA AGG T +DIACDP+LV++A+++ NVPVCVS+V  E F A V AGA MVE+GN+D FY QG  F+AE+VL +T +TR +L  S+P+SVTVPHTL L+EQV LA  LEA G  +IQTEG   ++PS GG+QG IE+AAPTLAA  AIS+AV IP MAASG+S +TAP+A+AAGA GVGVGSAVNKLNSEI M+A VR I  AM
Sbjct:    4 GDVMLPFEQRRALKIISGLNNFDEKSVASVVRAANAGGATLVDIACDPKLVQLARSIGNVPVCVSSVVAEDFLAAVKAGANMVEIGNYDSFYAQGRKFSAEEVLAITERTRDILGSSIPVSVTVPHTLPLDEQVSLALALEAAGASIIQTEGGMPMKPSSGGIQGLIEKAAPTLAATAAISKAVEIPTMAASGISAITAPLAIAAGASGVGVGSAVNKLNSEIAMLAAVREIYEAM 239          
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: D8SUW3_SELML (Uncharacterized protein ycf23 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SUW3_SELML)

HSP 1 Score: 274 bits (701), Expect = 2.220e-85
Identity = 144/229 (62.88%), Postives = 182/229 (79.48%), Query Frame = 2
Query:  125 AGKALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAMGL 811
            A +A KVI+GLN FD + V+ V  AA  GG TH+DIACDP+LV +A  ++++P+CVSAV+PE F A V AGA M+E+GNFD FYD G  F++++VLE+TR+TR LLP + LSVTVPHTL L+EQV+LAE LE  G D+IQTEG  +  PSK G+ G IE+A PTLAAA++ISRA+ +PV+ ASGLS VTAPMA+ AGA GVG+GSAVNKLNS++ MVA VR+IA AMGL
Sbjct:   58 AKRAFKVIAGLNNFDRENVADVVVAAEKGGATHVDIACDPQLVELALGLTSLPICVSAVDPEAFVAAVDAGAHMIEIGNFDSFYDSGRVFSSKEVLELTRRTRELLPHITLSVTVPHTLPLDEQVQLAEALEEEGADIIQTEGGTASTPSKPGITGLIEKATPTLAAAYSISRAITLPVLCASGLSAVTAPMAITAGASGVGIGSAVNKLNSQLAMVATVRSIADAMGL 286          
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: A0A1E5QXG4_9CHRO (Uncharacterized protein n=2 Tax=unclassified Cyanobacterium TaxID=2629879 RepID=A0A1E5QXG4_9CHRO)

HSP 1 Score: 272 bits (695), Expect = 2.980e-85
Identity = 144/225 (64.00%), Postives = 177/225 (78.67%), Query Frame = 2
Query:  131 KALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAM 805
            KALKVISGLN FD   V  V +AA  GG T +DIA D E+++  K   N+PVCVSAVEP+LF + V AGA+++E+GNFD FY QG+ F+AEDVL +TR+TRALLP++ LSVTVPHTL L EQV LA+ LEA G D+IQTEG  S +P+  G+ G IE+A+PTLAAAHAIS+AV IPV+ ASGLSDVT PMA+A GA GVGVGSAVNKLN E+ M+AVVR++  A+
Sbjct:   14 KALKVISGLNNFDLANVKAVCKAAELGGATFVDIAADVEIIKAVKESINIPVCVSAVEPQLFVSAVEAGADLIEIGNFDSFYAQGINFSAEDVLNLTRQTRALLPNILLSVTVPHTLPLHEQVELAQALEAAGADIIQTEGGTSSKPNHSGILGLIEKASPTLAAAHAISKAVQIPVLCASGLSDVTVPMAIATGASGVGVGSAVNKLNDEVAMMAVVRSLVEAL 238          
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: A0A0D6ACD4_9CHRO (IMP dehydrogenase/GMP reductase n=1 Tax=Geminocystis sp. NIES-3708 TaxID=1615909 RepID=A0A0D6ACD4_9CHRO)

HSP 1 Score: 271 bits (694), Expect = 4.350e-85
Identity = 144/229 (62.88%), Postives = 177/229 (77.29%), Query Frame = 2
Query:  119 FRAGKALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAM 805
            F   KALKVISGLN FD D V  V +AA  GG T +DIA D  L++  + + N+P+CVSAV+PEL    V AGA++VE+GNFD FY QG+TFTAEDVL +TR+TRALLP++ LSVTVPHTL L+EQV LA+ L   G D+IQTEG  S  P+  GV G IE+A+PTLA AHAISRAV +PVM ASGLSDVTAPMA++AGA G+GVGSAVNKLN +I M+AVVR++  ++
Sbjct:   11 FATKKALKVISGLNNFDVDNVVAVCKAAELGGATFVDIAADVNLIKTVRQLINLPICVSAVKPELLANAVEAGADLVEIGNFDSFYAQGITFTAEDVLRLTRETRALLPNITLSVTVPHTLPLDEQVELAQALVTQGADIIQTEGGTSSNPNHSGVLGLIEKASPTLATAHAISRAVEVPVMCASGLSDVTAPMAISAGADGIGVGSAVNKLNDQIAMIAVVRSLVESL 239          
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: UPI001882BC92 (DUF561 domain-containing protein n=1 Tax=Cyanobacterium stanieri TaxID=102235 RepID=UPI001882BC92)

HSP 1 Score: 271 bits (693), Expect = 5.950e-85
Identity = 148/233 (63.52%), Postives = 180/233 (77.25%), Query Frame = 2
Query:  131 KALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPAPAAV 829
            KALKVISGLN FD   V  V RAA  GG T +DIA D E+++  K   ++PVCVSAVEP+LF + V AGA+++E+GNFD FY QG+ F+AEDVL +TR+TRALLP V LSVTVPHTL L+EQV LA++LEA G D+IQTEG  S  P+  G+ G IE+A+PTLAAAHAISRAV IPV+ ASGLSDVT PMA+A GA GVGVGSAVNKLN ++ M+AVVR++  A+   A  AV
Sbjct:   14 KALKVISGLNNFDVANVVAVCRAAQLGGATFVDIAADVEIIKAVKESIDLPVCVSAVEPQLFVSAVEAGADLIEIGNFDSFYAQGINFSAEDVLSLTRQTRALLPHVLLSVTVPHTLPLDEQVELAQKLEAEGADIIQTEGGTSSNPNHSGILGLIEKASPTLAAAHAISRAVQIPVLCASGLSDVTVPMAIATGASGVGVGSAVNKLNDQVAMIAVVRSLVEALNRSASQAV 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIP5_ECTSI1.600e-15487.55Uncharacterized protein ycf23 n=2 Tax=Ectocarpus T... [more]
A0A835YK10_9STRA4.820e-10469.67Uncharacterized protein ycf23 n=1 Tax=Tribonema mi... [more]
A0A1Y1HWD8_KLENI1.520e-8964.83Uncharacterized protein ycf23 n=1 Tax=Klebsormidiu... [more]
U5DGR7_9CHRO3.070e-8863.95Pyruvate/oxaloacetate carboxyltransferase n=1 Tax=... [more]
A0A3M9ZCT6_9CYAN1.060e-8564.16DUF561 domain-containing protein n=2 Tax=Pseudanab... [more]
L1K0A3_GUITC1.090e-8563.98Uncharacterized protein ycf23 n=2 Tax=Guillardia t... [more]
D8SUW3_SELML2.220e-8562.88Uncharacterized protein ycf23 n=2 Tax=Selaginella ... [more]
A0A1E5QXG4_9CHRO2.980e-8564.00Uncharacterized protein n=2 Tax=unclassified Cyano... [more]
A0A0D6ACD4_9CHRO4.350e-8562.88IMP dehydrogenase/GMP reductase n=1 Tax=Geminocyst... [more]
UPI001882BC925.950e-8563.52DUF561 domain-containing protein n=1 Tax=Cyanobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50859contigH-elongata_contig50859:329..3485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score453.8
Seed ortholog evalue6.1e-125
Seed eggNOG ortholog2880.D7FIP5
EggNOG free text desc.Protein of unknown function (DUF561)
EggNOG OGs28MV1@1,2QUDA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionAldolase-type TIM barrel
Ec32 orthologEc-27_000540.1
Exons6
Model size1502
Cds size849
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50859.12346.1prot_H-elongata_contig50859.12346.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50859 348..2851 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930834.8409374-UTR-H-elongata_contig50859:328..3471622930834.8409374-UTR-H-elongata_contig50859:328..347Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50859 329..347 +
1691679590.6476934-UTR-H-elongata_contig50859:328..3471691679590.6476934-UTR-H-elongata_contig50859:328..347Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50859 329..347 +
1622930834.9661288-UTR-H-elongata_contig50859:2851..34851622930834.9661288-UTR-H-elongata_contig50859:2851..3485Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50859 2852..3485 +
1691679590.7250051-UTR-H-elongata_contig50859:2851..34851691679590.7250051-UTR-H-elongata_contig50859:2851..3485Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50859 2852..3485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930834.8612773-CDS-H-elongata_contig50859:347..4701622930834.8612773-CDS-H-elongata_contig50859:347..470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50859 348..470 +
1691679590.6584496-CDS-H-elongata_contig50859:347..4701691679590.6584496-CDS-H-elongata_contig50859:347..470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50859 348..470 +
1622930834.878139-CDS-H-elongata_contig50859:942..10831622930834.878139-CDS-H-elongata_contig50859:942..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50859 943..1083 +
1691679590.669216-CDS-H-elongata_contig50859:942..10831691679590.669216-CDS-H-elongata_contig50859:942..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50859 943..1083 +
1622930834.8920763-CDS-H-elongata_contig50859:1414..16271622930834.8920763-CDS-H-elongata_contig50859:1414..1627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50859 1415..1627 +
1691679590.6780834-CDS-H-elongata_contig50859:1414..16271691679590.6780834-CDS-H-elongata_contig50859:1414..1627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50859 1415..1627 +
1622930834.9078956-CDS-H-elongata_contig50859:2104..21841622930834.9078956-CDS-H-elongata_contig50859:2104..2184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50859 2105..2184 +
1691679590.6878576-CDS-H-elongata_contig50859:2104..21841691679590.6878576-CDS-H-elongata_contig50859:2104..2184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50859 2105..2184 +
1622930834.9259439-CDS-H-elongata_contig50859:2317..24841622930834.9259439-CDS-H-elongata_contig50859:2317..2484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50859 2318..2484 +
1691679590.7001207-CDS-H-elongata_contig50859:2317..24841691679590.7001207-CDS-H-elongata_contig50859:2317..2484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50859 2318..2484 +
1622930834.9456663-CDS-H-elongata_contig50859:2726..28511622930834.9456663-CDS-H-elongata_contig50859:2726..2851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50859 2727..2851 +
1691679590.7143102-CDS-H-elongata_contig50859:2726..28511691679590.7143102-CDS-H-elongata_contig50859:2726..2851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50859 2727..2851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50859.12346.1

>prot_H-elongata_contig50859.12346.1 ID=prot_H-elongata_contig50859.12346.1|Name=mRNA_H-elongata_contig50859.12346.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=283bp
MKSTCFVLATTALSGTDSFCFSPPRMSGDVMAPFRAGKALKVISGLNKFD
ADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFP
ACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTV
PHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTL
AAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIG
MVAVVRAIASAMGLPAPAAVKAPTPLIEAKVV*
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mRNA from alignment at H-elongata_contig50859:329..3485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50859.12346.1 ID=mRNA_H-elongata_contig50859.12346.1|Name=mRNA_H-elongata_contig50859.12346.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3157bp|location=Sequence derived from alignment at H-elongata_contig50859:329..3485+ (Himanthalia elongata Himel1 dioecious)
CAGCGGAACAGGGCAAACCATGAAGTCTACCTGCTTTGTTCTCGCAACGA CGGCACTGTCAGGAACGGATTCGTTCTGCTTCTCGCCGCCTCGTATGTCC GGCGACGTCATGGCACCTTTCCGCGCGGGCAAAGCTCTTAAGGTAAGAGG CTTGGTCGCGTCAGCGTCGATGCACGTCGTACCCCAATACGATACGCTCT ACATGTCGTCACTATCGCTTACGGCAAAAAGCGCATGATGAGTTTTGAAG GTTCGTGCTTGCGTTAAAATATACTTTTTCGTGAAGGTTTATTTCGCGTA CTCTTTGTGGTGGTCTGTATGAATTGTGGCGTCTCGCTCTGTTTGCTCTT GACACAGGAGGGTGCCGCTCGAGGGAATATTTTGGTAAAGCGGTTGTTCG CCTCGCCTACCTCGTAGTGCCGCGCAGGAGCAAAAACAACCATCCGCGGG ATTAATGACGCGAGAATCGTGGCTGAGGTATATACATGCGATGCCAAAGT CGACTGATATAAGCCACTTGCGTTCTACGACGGGATTGTGGGTAGCTCTA ATCAGTTCGTCACATACATGGAATGGGCCATTGCGATGGTCTTCCGGATT GGCTATTGGCGCAGGTTATTTCAGGGCTCAACAAATTCGACGCCGATCTG GTATCGAAGGTCGCTAGGGCAGCGGTTGCGGGTGGAGGTACGCACATCGA CATCGCGTGTGACCCCGAGCTCGTCCGCGTGGCGAAGGCGGTATCCAACG TACCGGTGAGAGTCCAAGTCCTCCACGGAAGACGATTCTCGTAAGATGCT TAAAATATCGTTCCTCCTTCGCCCGCATGCGCCGATTCTACCTCCCTTAC TACTCGATACCCTCAGTTGTAGCCCTGTGGTTTGTGTCTCGGTCGGAATA GAACGGGAAGGAGTATGTCCTCGATTAGTGCTAGCCAACCGAGGTTCCCG ACGCAGTGCCACAAGCTCTAAACCGAGACCTCCTCCTCCATCGCCAAAAG GAGTGCGAGAGTAGCTGGATACTGACTTGCATAATTCTCCCGCTGTGCCC CCATCGCCCATTTCCCACGAAACGACGGGGGAAAAGGTATGCGTCTCGGC GGTCGAGCCCGAACTATTCCCCGCTTGCGTCGCCGCCGGCGCGGAGATGG TAGAGCTTGGAAACTTCGACTGTTTCTACGACCAGGGGCTGACCTTCACG GCAGAGGACGTGCTCGAGATGACCCGCAAGACCAGAGCTCTTCTTCCGTC CGTGCCGCTGTCTGTTACCGTGCCGCACACCCTCGACCTGGAGGAGCAGG TAATCGTGAAAATAGATAATGACTCACCTGTCGGAACACCCCGTGGGTCG AGACGGGGCATGACGGGACTGCTTGTGATTCCTTGTTTGCCCGTCAACAA GCCGCGTTTAGTGCCGAGATATCGCAGCGGAGGGGCAGTGTTTGGGTTTC CCCTGGTGGGAAACCTCGGTAACTCTTTTCGTTAGCTGTAGTTACTTGTC CGTTGCCTGATATTCGCGCATCTTCGTGAGCATAGCCATTATCGTTTGCC CGGAGAGTCGACCTGCGGCCACGCAGTTACTCCTTGGTTTCCTCGTACTT GCGTTGCAACATTCCTGCGCGCGTGGAGAACGTTAATCGTGGGTGACCTC GACGATCGCATAGAACTCAAATACCTCACTGGGGATATCTGCATTTTTGT ATTCCAATGAAGGATTAGTCGAATGAAAGAAACTCAGAAGGAGATGGTTC TCATAGCGTGTCACTATCTTCCTTAGGTGCGCCTCGCGGAAGAGCTCGAG GCTCTTGGCGTGGACGTCATCCAGACGGAGGGGAAGTACAGCCTCGAACC TTCCAAGTGAGAATCGTGGAGCTCCTTCTCAATCTTGGAATCGGGGGGGT GTAGAGCCCCGATCCAATCATAGCTATCGCGCAGAGGATGCGCGAATATT CATACCCACTCTGCAACGTGACTTTCGTTCATCCGTCAGGGGCGGCGTCC AGGGAGCGATAGAGCGAGCGGCGCCTACTCTTGCCGCAGCACACGCTATC TCTCGGGCCGTGAACATTCCCGTCATGGCTGCCTCCGGTCTCAGCGACGT TACGGCACCGATGGCCTTGGCCGCAGGAGCCCAGGGAGTTGGAGTGGGAT CGGCAGGTGAGAACCTACGCGGCGCATGGGTCTACGAAACACATGCAATA TGTATTGAGTGAAAGATATACTTTTTGCAGCATCGTTGTGCTTGCGCAGT CAGTAGCAGCGAGAGAGCGTTATCGAGCTCATTCAGGCGCTCGAACAAGC CCTCAAAACACCACTGGGTACCGAATTATGAGTATCCCTCAACCCGTCCC CCGGCCTCGTATTTTTGCGTGGTCCCTTGCTTGCTCTTGGGATTCCAGTC AACAAACTCAATAGCGAGATCGGGATGGTGGCGGTGGTGCGGGCGATTGC GTCAGCGATGGGGTTGCCCGCACCTGCCGCGGTGAAGGCGCCTACTCCCC TTATTGAAGCAAAAGTAGTCTAGCCACTCCCACGTGTGCCTTGACTCACG ATAGTCTAGCAGGGGGGCGCCTCGGTGCCTAGTGGAGGTTTCGTGTGGAT CTTCCTCAAGAGGGTACACTGATGGTAAGGAGCAAGCTCACGTTTCAATA TTCCTCTTGTCGCTTTCGTTGGATTGACGGTCGTCCGGGAAACCCTTCCA TCAGTTTATACGTGGTACAGTAAAACAAATACCTTCGAGTCTGTCGCGCC TGGGAGCAGTAATGATCATATTCGACCTCTTCTCGTCGTGAAGGGAAATA AATCGAAAGCTTGGGTGCCAGAACGTGCGGGATATCCGCATCCATGCGGC CCAAGCGTTGGTGGACATTTTCGAGTCTTTAAAATACTCCACTCGCGGAG GACAACATGAACAAGCTTTCTTTAAAAAGTGTTGATGACCCAACCAGATG ATCAACGATTCATACCTCAAACGTACATTAGGGTTGTTTAACGCCCGGAG TAAACTGCACAGAAGCGCCCGGACATCTTGTCCCGGAGGCTCGACAAGTA CTCGTACGTAGATACAACGTCGACGAGCCCCAGTTTCCTCTCATCAAGTC AAAAGCCGGGGGGGGGGTTAACAGCTTACAGCCCTATAGACGCTCCCGCC TTCACCG
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Coding sequence (CDS) from alignment at H-elongata_contig50859:329..3485+

>mRNA_H-elongata_contig50859.12346.1 ID=mRNA_H-elongata_contig50859.12346.1|Name=mRNA_H-elongata_contig50859.12346.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1698bp|location=Sequence derived from alignment at H-elongata_contig50859:329..3485+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTCTACCTGCTTTGTTCTCGCAACGACGGCACTGTCAGGAACGGA
TTCGTTCTGCTTCTCGCCGCCTCGTATGTCCGGCGACGTCATGGCACCTT
TCCGCGCGGGCAAAGCTCTTAAGATGAAGTCTACCTGCTTTGTTCTCGCA
ACGACGGCACTGTCAGGAACGGATTCGTTCTGCTTCTCGCCGCCTCGTAT
GTCCGGCGACGTCATGGCACCTTTCCGCGCGGGCAAAGCTCTTAAGGTTA
TTTCAGGGCTCAACAAATTCGACGCCGATCTGGTATCGAAGGTCGCTAGG
GCAGCGGTTGCGGGTGGAGGTACGCACATCGACATCGCGTGTGACCCCGA
GCTCGTCCGCGTGGCGAAGGCGGTATCCAACGTACCGGTTATTTCAGGGC
TCAACAAATTCGACGCCGATCTGGTATCGAAGGTCGCTAGGGCAGCGGTT
GCGGGTGGAGGTACGCACATCGACATCGCGTGTGACCCCGAGCTCGTCCG
CGTGGCGAAGGCGGTATCCAACGTACCGGTATGCGTCTCGGCGGTCGAGC
CCGAACTATTCCCCGCTTGCGTCGCCGCCGGCGCGGAGATGGTAGAGCTT
GGAAACTTCGACTGTTTCTACGACCAGGGGCTGACCTTCACGGCAGAGGA
CGTGCTCGAGATGACCCGCAAGACCAGAGCTCTTCTTCCGTCCGTGCCGC
TGTCTGTTACCGTGCCGCACACCCTCGACCTGGAGGAGCAGGTATGCGTC
TCGGCGGTCGAGCCCGAACTATTCCCCGCTTGCGTCGCCGCCGGCGCGGA
GATGGTAGAGCTTGGAAACTTCGACTGTTTCTACGACCAGGGGCTGACCT
TCACGGCAGAGGACGTGCTCGAGATGACCCGCAAGACCAGAGCTCTTCTT
CCGTCCGTGCCGCTGTCTGTTACCGTGCCGCACACCCTCGACCTGGAGGA
GCAGGTGCGCCTCGCGGAAGAGCTCGAGGCTCTTGGCGTGGACGTCATCC
AGACGGAGGGGAAGTACAGCCTCGAACCTTCCAAGTGCGCCTCGCGGAAG
AGCTCGAGGCTCTTGGCGTGGACGTCATCCAGACGGAGGGGAAGTACAGC
CTCGAACCTTCCAAGGGCGGCGTCCAGGGAGCGATAGAGCGAGCGGCGCC
TACTCTTGCCGCAGCACACGCTATCTCTCGGGCCGTGAACATTCCCGTCA
TGGCTGCCTCCGGTCTCAGCGACGTTACGGCACCGATGGCCTTGGCCGCA
GGAGCCCAGGGAGTTGGAGTGGGATCGGCAGGGGCGGCGTCCAGGGAGCG
ATAGAGCGAGCGGCGCCTACTCTTGCCGCAGCACACGCTATCTCTCGGGC
CGTGAACATTCCCGTCATGGCTGCCTCCGGTCTCAGCGACGTTACGGCAC
CGATGGCCTTGGCCGCAGGAGCCCAGGGAGTTGGAGTGGGATCGGCAGTC
AACAAACTCAATAGCGAGATCGGGATGGTGGCGGTGGTGCGGGCGATTGC
GTCAGCGATGGGGTTGCCCGCACCTGCCGCGGTGAAGGCGCCTACTCCCC
TTATTGAAGCAAAAGTAGTCTAGTCAACAAACTCAATAGCGAGATCGGGA
TGGTGGCGGTGGTGCGGGCGATTGCGTCAGCGATGGGGTTGCCCGCACCT
GCCGCGGTGAAGGCGCCTACTCCCCTTATTGAAGCAAAAGTAGTCTAG
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