mRNA_H-elongata_contig115615.1234.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115615.1234.1
Unique NamemRNA_H-elongata_contig115615.1234.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig115615.1234.1 vs. uniprot
Match: D7FGV8_ECTSI (Aspartate kinase/homoserine dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGV8_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 4.050e-29
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 RDGSDYSASIFGKLLQASAVQIWTDVDGVLSADPRKVPEAKVLKEVSFKEAMELAYFGAKVI 186
            RDGSDYSASIFGKLLQASAVQIWTDVDGVLSADPRKVPEAKVL EVSF EA+ELAYFGAKVI
Sbjct:  248 RDGSDYSASIFGKLLQASAVQIWTDVDGVLSADPRKVPEAKVLPEVSFNEAVELAYFGAKVI 309
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BLAST of mRNA_H-elongata_contig115615.1234.1 vs. uniprot
Match: A0A835Z198_9STRA (Aspartate kinase/homoserine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z198_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.690e-27
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    1 RDGSDYSASIFGKLLQASAVQIWTDVDGVLSADPRKVPEAKVLKEVSFKEAMELAYFGAKVI 186
            RDGSDYSASIFGKLL+ASAV IWTDVDGV+SADPR+VPEAKVL +VSF EAMELAYFGAKVI
Sbjct:  219 RDGSDYSASIFGKLLRASAVNIWTDVDGVMSADPRRVPEAKVLSDVSFNEAMELAYFGAKVI 280
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BLAST of mRNA_H-elongata_contig115615.1234.1 vs. uniprot
Match: A0A7S2EA35_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EA35_TRICV)

HSP 1 Score: 102 bits (253), Expect = 8.560e-26
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 RDGSDYSASIFGKLLQASAVQIWTDVDGVLSADPRKVPEAKVLKEVSFKEAMELAYFGAKVI 186
            RDGSDYSA+I GKLL++ AV IWTDVDGVLSADPR+VP A V+ EVSF EAMELAYFGAKVI
Sbjct:   11 RDGSDYSAAIVGKLLRSRAVTIWTDVDGVLSADPRRVPRAHVIPEVSFNEAMELAYFGAKVI 72
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BLAST of mRNA_H-elongata_contig115615.1234.1 vs. uniprot
Match: A0A7S2P4V3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P4V3_9STRA)

HSP 1 Score: 104 bits (259), Expect = 9.610e-26
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 RDGSDYSASIFGKLLQASAVQIWTDVDGVLSADPRKVPEAKVLKEVSFKEAMELAYFGAKVI 186
            RDGSDYSA+IFG+LLQ++ + IWTDVDGVLSADPR+VP+A VL +VSF EAMELAYFGAKVI
Sbjct:  121 RDGSDYSAAIFGRLLQSTVITIWTDVDGVLSADPRRVPDAHVLPDVSFNEAMELAYFGAKVI 182
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BLAST of mRNA_H-elongata_contig115615.1234.1 vs. uniprot
Match: W7U117_9STRA (Bifunctional aspartokinase i homoserine dehydrogenase i n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U117_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.800e-25
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 RDGSDYSASIFGKLLQASAVQIWTDVDGVLSADPRKVPEAKVLKEVSFKEAMELAYFGAKVI 186
            RDGSDYSASIFG+LL A+ + IWTDVDGVLSADPR+VPEAKVL +VS+ EAMELAYFGAKVI
Sbjct:  220 RDGSDYSASIFGRLLNATGITIWTDVDGVLSADPRRVPEAKVLADVSYSEAMELAYFGAKVI 281
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BLAST of mRNA_H-elongata_contig115615.1234.1 vs. uniprot
Match: A0A7S3MFA7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFA7_9STRA)

HSP 1 Score: 101 bits (251), Expect = 9.870e-25
Identity = 47/62 (75.81%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 RDGSDYSASIFGKLLQASAVQIWTDVDGVLSADPRKVPEAKVLKEVSFKEAMELAYFGAKVI 186
            RDGSDYSASIFG++L+AS++ IWTDV GV SADPR+VPEA++L EVS+ EA+ELAYFGAKVI
Sbjct:  114 RDGSDYSASIFGRMLRASSITIWTDVSGVYSADPRRVPEAQILPEVSYTEAVELAYFGAKVI 175
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BLAST of mRNA_H-elongata_contig115615.1234.1 vs. uniprot
Match: A0A7S3JZJ9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZJ9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.170e-24
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 RDGSDYSASIFGKLLQASAVQIWTDVDGVLSADPRKVPEAKVLKEVSFKEAMELAYFGAKVI 186
            RDGSDYSASIFGKLL AS V IWTDVDGVLSADPR+VPEA  L+EV+++EAMELAYFGAKV+
Sbjct:  257 RDGSDYSASIFGKLLNASEVHIWTDVDGVLSADPRRVPEAFSLEEVTYEEAMELAYFGAKVL 318
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BLAST of mRNA_H-elongata_contig115615.1234.1 vs. uniprot
Match: A0A485KXV4_9STRA (Aste57867_13221 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXV4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.040e-24
Identity = 48/62 (77.42%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 RDGSDYSASIFGKLLQASAVQIWTDVDGVLSADPRKVPEAKVLKEVSFKEAMELAYFGAKVI 186
            RDGSD+SASIFG++L ASA+ IWTDV GV SADPR+VPEA++L +VS+KEAMELAYFGAKVI
Sbjct:  217 RDGSDFSASIFGRVLDASAITIWTDVSGVYSADPRRVPEARILPQVSYKEAMELAYFGAKVI 278
[Close]
BLAST of mRNA_H-elongata_contig115615.1234.1 vs. uniprot
Match: A0A1Z5JH93_FISSO (Bifunctional aspartokinase / homoserine dehydrogenase 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JH93_FISSO)

HSP 1 Score: 103 bits (256), Expect = 4.040e-24
Identity = 49/62 (79.03%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 RDGSDYSASIFGKLLQASAVQIWTDVDGVLSADPRKVPEAKVLKEVSFKEAMELAYFGAKVI 186
            RDGSDYSA+I G+LLQA+++QIWTDVDGVLSADPR+VP A+VL EVS+ EAMELA+FGAKVI
Sbjct:  291 RDGSDYSAAIMGRLLQANSIQIWTDVDGVLSADPRRVPLAQVLDEVSYNEAMELAFFGAKVI 352
[Close]
BLAST of mRNA_H-elongata_contig115615.1234.1 vs. uniprot
Match: A0A7S2SL09_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SL09_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.500e-24
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 RDGSDYSASIFGKLLQASAVQIWTDVDGVLSADPRKVPEAKVLKEVSFKEAMELAYFGAKVI 186
            RDGSD+SASIFG+LL AS + IWTDVDGVLSADPR+VP+A+VL EVS+ EA+ELAYFGAKVI
Sbjct:  152 RDGSDFSASIFGRLLGASEINIWTDVDGVLSADPRRVPDAQVLPEVSYNEAIELAYFGAKVI 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115615.1234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGV8_ECTSI4.050e-2995.16Aspartate kinase/homoserine dehydrogenase n=2 Tax=... [more]
A0A835Z198_9STRA1.690e-2788.71Aspartate kinase/homoserine dehydrogenase n=1 Tax=... [more]
A0A7S2EA35_TRICV8.560e-2680.65Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2P4V3_9STRA9.610e-2679.03Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
W7U117_9STRA1.800e-2582.26Bifunctional aspartokinase i homoserine dehydrogen... [more]
A0A7S3MFA7_9STRA9.870e-2575.81Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3JZJ9_9STRA1.170e-2482.26Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A485KXV4_9STRA4.040e-2477.42Aste57867_13221 protein n=1 Tax=Aphanomyces stella... [more]
A0A1Z5JH93_FISSO4.040e-2479.03Bifunctional aspartokinase / homoserine dehydrogen... [more]
A0A7S2SL09_9STRA5.500e-2479.03Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115615contigH-elongata_contig115615:376..1010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue1.8e-24
Seed eggNOG ortholog2880.D7FGV8
KEGG rclassRC00002,RC00043,RC00087
KEGG koko:K12524
KEGG ReactionR00480,R01773,R01775
KEGG Pathwayko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00017,M00018,M00526,M00527
EggNOG free text desc.homoserine dehydrogenase activity
EggNOG OGs2QQBK@2759,COG0460@1
EC1.1.1.3,2.7.2.4
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929670.1808383-CDS-H-elongata_contig115615:375..4381622929670.1808383-CDS-H-elongata_contig115615:375..438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115615 376..438 -
1691679113.3389647-CDS-H-elongata_contig115615:375..4381691679113.3389647-CDS-H-elongata_contig115615:375..438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115615 376..438 -
1622929670.20213-CDS-H-elongata_contig115615:875..10101622929670.20213-CDS-H-elongata_contig115615:875..1010Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115615 876..1010 -
1691679113.3587523-CDS-H-elongata_contig115615:875..10101691679113.3587523-CDS-H-elongata_contig115615:875..1010Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115615 876..1010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115615.1234.1prot_H-elongata_contig115615.1234.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115615 376..1010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115615.1234.1

>prot_H-elongata_contig115615.1234.1 ID=prot_H-elongata_contig115615.1234.1|Name=mRNA_H-elongata_contig115615.1234.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
RDGSDYSASIFGKLLQASAVQIWTDVDGVLSADPRKVPEAKVLKEVSFKE
AMELAYFGAKVITST*
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mRNA from alignment at H-elongata_contig115615:376..1010-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115615.1234.1 ID=mRNA_H-elongata_contig115615.1234.1|Name=mRNA_H-elongata_contig115615.1234.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=635bp|location=Sequence derived from alignment at H-elongata_contig115615:376..1010- (Himanthalia elongata Himel1 dioecious)
AGAGACGGGAGTGACTATTCCGCCAGCATCTTTGGCAAGCTGCTGCAGGC
CTCCGCCGTGCAGATCTGGACAGACGTGGACGGCGTTCTCAGCGCCGATC
CGCGGAAAGTTCCTGAGGCCAAGGTCCTCAAGGAAGTGAGTCATGCCGCA
GAAAGTTCCGAAGGAAACTTCTGCTGGCGAGCACCTCAAAGTCTTCCTCC
CTCCCTCCGCCCCTATAAAAATTCAATCGAGGAAGAGGGGCGGAGAATGA
CAGTGGAAGAGAATAATGGAGGGTGTGGCCAGCCTCGGCGTGCATGCCCC
GCTGTGGCCTCACTGTTTAGACAGGCAGCGCGAACAGCTGGTCCTGTAGC
GTTTTGAACTTTTGCATTTTCTGGCTGAATCGATCCATTCACTATTAATA
GATAAAAAAAACTATTATTAAAGTCATTTTTTACCTTGTAGTTTATTATT
TAGATGATGTTGTCCTTTTTTATTTTCTCCCTCAAACATTTTTGAATCTA
TCCGTGTTCATCCATCCTGAACTTTATGCTCTCATTTCCTTTTCTTTTGC
CTGCCTCCCGTCATTTTTGCAGGTTTCTTTCAAGGAGGCCATGGAGCTGG
CATACTTCGGGGCCAAAGTAATTACCAGTACTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig115615:376..1010-

>mRNA_H-elongata_contig115615.1234.1 ID=mRNA_H-elongata_contig115615.1234.1|Name=mRNA_H-elongata_contig115615.1234.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig115615:376..1010- (Himanthalia elongata Himel1 dioecious)
AGAGACGGGAGTGACTATTCCGCCAGCATCTTTGGCAAGCTGCTGCAGGC
CTCCGCCGTGCAGATCTGGACAGACGTGGACGGCGTTCTCAGCGCCGATC
CGCGGAAAGTTCCTGAGGCCAAGGTCCTCAAGGAAAGAGACGGGAGTGAC
TATTCCGCCAGCATCTTTGGCAAGCTGCTGCAGGCCTCCGCCGTGCAGAT
CTGGACAGACGTGGACGGCGTTCTCAGCGCCGATCCGCGGAAAGTTCCTG
AGGCCAAGGTCCTCAAGGAAGTTTCTTTCAAGGAGGCCATGGAGCTGGCA
TACTTCGGGGCCAAAGTAATTACCAGTACTTAGGTTTCTTTCAAGGAGGC
CATGGAGCTGGCATACTTCGGGGCCAAAGTAATTACCAGTACTTAG
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