mRNA_H-elongata_contig50821.12336.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50821.12336.1
Unique NamemRNA_H-elongata_contig50821.12336.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50821.12336.1 vs. uniprot
Match: D7G798_ECTSI (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G798_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.730e-11
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 3 
Query:  186 MSTPNINH--ANEEGDHAAKFNRSSSVGPGMTASTLNPVQSNRRTLYLNLPFF 338
            MSTPNIN    +  G + AKFNRSSSVGPG+ AS LNP Q NRR LY+NLPFF
Sbjct:    1 MSTPNINQLVGDAAGGNHAKFNRSSSVGPGIAASNLNPQQRNRRALYVNLPFF 53
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BLAST of mRNA_H-elongata_contig50821.12336.1 vs. uniprot
Match: A0A835ZG82_9STRA (Solute carrier family facilitated glucose transporter member 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG82_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.520e-10
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 3 
Query:  171 RYGSAMSTPNINHANE-EGDHAAKFNRSSSVGPGMTASTLNPVQSNRRTLYLNLPF 335
            +YG+ MST NI    + EG++ AKFNRSSSVGPGMT + LNP   +RR LY +LPF
Sbjct:    6 KYGTVMSTSNIESFYQGEGENKAKFNRSSSVGPGMTTNPLNPTDRSRRALYESLPF 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50821.12336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G798_ECTSI2.730e-1167.92MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZG82_9STRA8.520e-1058.93Solute carrier family facilitated glucose transpor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50821contigH-elongata_contig50821:1541..1884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue8.1e-10
Seed eggNOG ortholog2880.D7G798
KEGG koko:K08142
KEGG TC2.A.1.1.12
EggNOG free text desc.transmembrane transporter activity
EggNOG OGsCOG0477@1,KOG0569@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons1
Model size344
Cds size213
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930834.1243784-UTR-H-elongata_contig50821:1540..16711622930834.1243784-UTR-H-elongata_contig50821:1540..1671Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50821 1541..1671 +
1691679590.392426-UTR-H-elongata_contig50821:1540..16711691679590.392426-UTR-H-elongata_contig50821:1540..1671Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50821 1541..1671 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930834.1393604-CDS-H-elongata_contig50821:1671..18841622930834.1393604-CDS-H-elongata_contig50821:1671..1884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50821 1672..1884 +
1691679590.4096954-CDS-H-elongata_contig50821:1671..18841691679590.4096954-CDS-H-elongata_contig50821:1671..1884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50821 1672..1884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50821.12336.1prot_H-elongata_contig50821.12336.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50821 1672..1884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50821.12336.1

>prot_H-elongata_contig50821.12336.1 ID=prot_H-elongata_contig50821.12336.1|Name=mRNA_H-elongata_contig50821.12336.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MPSTEADPLMTPPRYGSAMSTPNINHANEEGDHAAKFNRSSSVGPGMTAS
TLNPVQSNRRTLYLNLPFFR*
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mRNA from alignment at H-elongata_contig50821:1541..1884+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50821.12336.1 ID=mRNA_H-elongata_contig50821.12336.1|Name=mRNA_H-elongata_contig50821.12336.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=344bp|location=Sequence derived from alignment at H-elongata_contig50821:1541..1884+ (Himanthalia elongata Himel1 dioecious)
ACACTGTCCACTTGACCTTTTCAGTTTTTTTAACACCTCAAATATCCAAG
TAGATTCATCTACATCCCTTCGGAGGACAAGAAAGAGAGGGAGGCACAGA
TAAAAGGGCAATATAGGGAGAGAGAGTCAACATGCCATCCACCGAAGCGG
ATCCGTTGATGACGCCACCGAGATACGGTAGCGCTATGAGTACGCCCAAC
ATCAACCATGCGAACGAGGAGGGCGACCACGCTGCCAAATTCAACAGGAG
TTCTTCCGTGGGGCCGGGAATGACGGCAAGCACGCTCAACCCGGTGCAAT
CCAATCGGCGCACGCTGTACCTCAACTTGCCCTTCTTTAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig50821:1541..1884+

>mRNA_H-elongata_contig50821.12336.1 ID=mRNA_H-elongata_contig50821.12336.1|Name=mRNA_H-elongata_contig50821.12336.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig50821:1541..1884+ (Himanthalia elongata Himel1 dioecious)
ATGCCATCCACCGAAGCGGATCCGTTGATGACGCCACCGAGATACGGTAG
CGCTATGAGTACGCCCAACATCAACCATGCGAACGAGGAGGGCGACCACG
CTGCCAAATTCAACAGGAGTTCTTCCGTGGGGCCGGGAATGACGGCAAGC
ACGCTCAACCCGGTGCAATCCAATCGGCGCACGCTGTACCTCAACTTGCC
CTTCTTTAGGTGAATGCCATCCACCGAAGCGGATCCGTTGATGACGCCAC
CGAGATACGGTAGCGCTATGAGTACGCCCAACATCAACCATGCGAACGAG
GAGGGCGACCACGCTGCCAAATTCAACAGGAGTTCTTCCGTGGGGCCGGG
AATGACGGCAAGCACGCTCAACCCGGTGCAATCCAATCGGCGCACGCTGT
ACCTCAACTTGCCCTTCTTTAGGTGA
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