mRNA_H-elongata_contig50765.12328.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50765.12328.1
Unique NamemRNA_H-elongata_contig50765.12328.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig50765.12328.1 vs. uniprot
Match: A0A6H5L825_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L825_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 4.050e-72
Identity = 114/134 (85.07%), Postives = 125/134 (93.28%), Query Frame = 1 
Query:    7 CEHNLESMLGGSSMTKASPEYVKALFDHYANTFDESLKGLDYSSPDALREVLGSLRPKYREVFDAGCGTGLLGPLFRGISDTLIGVDLSEGMLEVAFERDVYDALAVGEIGEILRMRAEQGVQGDLVVAADVFV 408
            C+HNLES LG SSMTKASPEYVKALFD+YA +FDESLKGLDYSSP+ALREVLG LRP+Y+EVFDAGCGTGLLGPLFR I+DTLIGVDLSEGMLE A +RDVYDALAVGE+GEILRMRA +GV+GDLVVAADV V
Sbjct:  225 CKHNLESALGDSSMTKASPEYVKALFDYYAVSFDESLKGLDYSSPEALREVLGGLRPRYKEVFDAGCGTGLLGPLFRDITDTLIGVDLSEGMLEAALDRDVYDALAVGEMGEILRMRAGEGVRGDLVVAADVLV 358
[Close]
BLAST of mRNA_H-elongata_contig50765.12328.1 vs. uniprot
Match: A0A7S3XSZ3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSZ3_HETAK)

HSP 1 Score: 124 bits (311), Expect = 1.850e-31
Identity = 65/144 (45.14%), Postives = 97/144 (67.36%), Query Frame = 1 
Query:    1 MQCEHNLESMLGGSSMTKASPEYVKALFDHYANTFDESLKGLDYSSPDALREVLGSL-----RPKYREVFDAGCGTGLLGPLFRGISDTLIGVDLSEGMLEVAFERDVYDALAVGEI-GEI--LRMRAEQGVQGDLVVAADVFV 408
            +Q +H L+++L   ++  AS +YVK+LF+ YA TFD SL GL+Y +P+ + + +  L     +  +  V DAGCGTGL+GPLF GIS  LIG+D+S+GML+ A ER +Y +L  G+I  E+  +++ ++ G   DLVVAADV V
Sbjct:  145 IQADHALKAVLADPTVETASTDYVKSLFNDYAETFDSSLSGLEYKAPELISQTMHKLLNAAGKKTFNTVVDAGCGTGLIGPLFEGISRKLIGIDISDGMLQKAKERGMYASLREGDIVAELKDIKLDSDDGKLTDLVVAADVLV 288
[Close]
BLAST of mRNA_H-elongata_contig50765.12328.1 vs. uniprot
Match: A0A0G4H644_VITBC (Methyltransf_12 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H644_VITBC)

HSP 1 Score: 113 bits (283), Expect = 9.910e-27
Identity = 62/141 (43.97%), Postives = 88/141 (62.41%), Query Frame = 1 
Query:   10 EHNLESMLGGSSMTKASPEYVKALFDHYANTFDESLKGLDYSSPDALREVLGSLRPKY------REVFDAGCGTGLLGPLFRGISDTLIGVDLSEGMLEVAFERDVYDALAVGEIGEILRMRAEQGVQG--DLVVAADVFV 408
            +++L SM   S++T+ASP+YVK+LFDHYA+TFD+SL+ L Y +P  +R  +  L+         R V D GCGTGL G +FR ++  L G DLS  M+ +A E+ VY+A  VG++       A  G+ G  DL+ AADV V
Sbjct:  284 DYSLRSMQKDSTLTEASPDYVKSLFDHYADTFDKSLQKLHYQAPLMIRMAVDRLQESLLVAYPLRNVLDVGCGTGLSGQVFRNVTTFLYGFDLSPEMIRLAEEKGVYNATHVGDLQSGFGALAGHGLHGKVDLITAADVLV 424
[Close]
BLAST of mRNA_H-elongata_contig50765.12328.1 vs. uniprot
Match: A0A6U5CXU1_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U5CXU1_HEMAN)

HSP 1 Score: 110 bits (274), Expect = 1.700e-25
Identity = 62/146 (42.47%), Postives = 86/146 (58.90%), Query Frame = 1 
Query:    4 QCEHNLESMLGGSSMTKASPEYVKALFDHYANTFDESLKG-LDYSSPDALREVLGSL-----RPKYREVFDAGCGTGLLGPLFRGISDTLIGVDLSEGMLEVAFERDVYDALAVGEIGEILRMRA-----EQGVQGDLVVAADVFV 408
            + +H L +++     T AS  YVK+LFD YA +FD++L   L+Y +P  L E +         P +  +FDAGCGTGL GPLFR ++ TL+GVDLS  M+  A ER +YD L  G++ E L          +G   D+V+AADVFV
Sbjct:  277 EAKHALSALISDPETTSASAAYVKSLFDEYAESFDKALVADLNYRAPQLLHEKVSEFVGSKPLPVFGVLFDAGCGTGLCGPLFRNMTRTLVGVDLSGEMIRKATERGLYDELVEGDLVESLNQYGASEGKHKGTYIDIVLAADVFV 422
[Close]
BLAST of mRNA_H-elongata_contig50765.12328.1 vs. uniprot
Match: A0A3S0VPJ8_9GAMM (Tetratricopeptide repeat protein n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3S0VPJ8_9GAMM)

HSP 1 Score: 106 bits (265), Expect = 2.410e-24
Identity = 62/141 (43.97%), Postives = 79/141 (56.03%), Query Frame = 1 
Query:   10 EHNLESMLGGSSMTKASPEYVKALFDHYANTFDESLKGLDYSSPDALREVL--------GSLRPKYREVFDAGCGTGLLGPLFRGISDTLIGVDLSEGMLEVAFERDVYDALAVGEIGEILRMRAEQGVQGDLVVAADVFV 408
            +H L +     +  +A+  YV  LFD YA+ FDE L+ LDY +P+ L E +        G+L     EV DAGCGTGL GPL R  +  LIGVDLS GM+E A ER  YD L V E+   L   AE   + DL+ +AD  V
Sbjct:  256 QHFLTAWFSEETPARAADAYVTRLFDQYADQFDEDLQALDYRAPELLSEAITARLGTPNGTL-----EVLDAGCGTGLCGPLLRPYAQRLIGVDLSSGMIEKAQERGCYDELVVAELTAFL---AESAARYDLIASADTLV 388
[Close]
BLAST of mRNA_H-elongata_contig50765.12328.1 vs. uniprot
Match: UPI0018957CBA (tetratricopeptide repeat protein n=1 Tax=Methylobacter sp. BlB1 TaxID=2785914 RepID=UPI0018957CBA)

HSP 1 Score: 104 bits (260), Expect = 9.230e-24
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 1 
Query:   10 EHNLESMLGGSSMTKASPEYVKALFDHYANTFDESLKGLDYSSPDALREVLGSLRPKYRE---VFDAGCGTGLLGPLFRGISDTLIGVDLSEGMLEVAFERDVYDALAVGEIGEILRMRAEQGVQGDLVVAADVFV 408
            +H+L ++LG     +AS  Y++ +FD +A +FD  L GLDY +P+ + + +  L P+ R+   V DAGCGTGL GPL    + TL+GVDLS GML  A  R+VYD L   ++ E LR         DL+V+AD  V
Sbjct:  227 KHHLSALLGEDIPDRASQAYIQDIFDKFAASFDTVLNGLDYRAPELVTQAVSVLFPEPRQELRVLDAGCGTGLCGPLLLPYARTLVGVDLSSGMLNKAKGRNVYDELIEADLVEYLR---RYKALFDLIVSADTLV 359
[Close]
BLAST of mRNA_H-elongata_contig50765.12328.1 vs. uniprot
Match: S9PD95_9DELT (Uncharacterized protein n=3 Tax=Cystobacter TaxID=42 RepID=S9PD95_9DELT)

HSP 1 Score: 102 bits (253), Expect = 2.400e-23
Identity = 67/136 (49.26%), Postives = 83/136 (61.03%), Query Frame = 1 
Query:   19 LESMLGGSSMTKASPE-YVKALFDHYANTFDESLKG-LDYSSP----DALREVLGSLRPKYREVFDAGCGTGLLGPLFRGISDTLIGVDLSEGMLEVAFERDVYDALAVGEIGEILRMRAEQGVQGDLVVAADVFV 408
            LE+   GS   + S + YV ALFD YA TFD+SL+G LDY +P    DA+   LG+ R    +V D GCGTGL GPL + ++  L G+DLS GML+ A ER VYDAL  GEI   L   A    + DL+VA DV V
Sbjct:  104 LEAAETGSPPPERSADAYVSALFDLYAPTFDDSLRGFLDYRAPERLLDAVLTALGARRGL--DVLDLGCGTGLAGPLLKPLARNLEGIDLSTGMLDKARERGVYDALHAGEITARL---AASSARPDLIVAVDVLV 234
[Close]
BLAST of mRNA_H-elongata_contig50765.12328.1 vs. uniprot
Match: A0A2W4R676_9PROT (Methyltransferase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4R676_9PROT)

HSP 1 Score: 102 bits (255), Expect = 2.930e-23
Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = 1 
Query:    4 QCEHNLESMLGGSSMTKASPEYVKALFDHYANTFDESLKGLDYSSPDALREVLGSLRPKY--REVFDAGCGTGLLGPLFRGISDTLIGVDLSEGMLEVAFERDVYDALAVGEIGEILRMRAEQGVQGDLVVAADVF 405
            +  H + ++ G     +AS EY++  FD +A+ FDESL+ L+Y +P  +   L   RP     ++ DAGCGTGL GPL R +S  L+GVDLSE M++ A ER  YD LAV E+   LR R E     D V+AAD  
Sbjct:  172 RARHMVAALSGRDVPPRASDEYLREHFDSFADAFDESLERLEYRAPQLVAAALHRWRPSDDPMDILDAGCGTGLCGPLVRDMSRRLVGVDLSERMIDRARERGAYDELAVEELCMYLRSRPECF---DAVIAADTL 304
[Close]
BLAST of mRNA_H-elongata_contig50765.12328.1 vs. uniprot
Match: UPI0006924B9E (tetratricopeptide repeat protein n=2 Tax=Methylobacter TaxID=429 RepID=UPI0006924B9E)

HSP 1 Score: 102 bits (255), Expect = 4.720e-23
Identity = 55/135 (40.74%), Postives = 81/135 (60.00%), Query Frame = 1 
Query:   13 HNLESMLGGSSMTKASPEYVKALFDHYANTFDESLKGLDYSSPDALREVLGSLRPKYRE---VFDAGCGTGLLGPLFRGISDTLIGVDLSEGMLEVAFERDVYDALAVGEIGEILRMRAEQGVQGDLVVAADVFV 408
            H+L + LG     +AS  Y++ +FD +A +FD  L  LDY +P+ + + + +L P+ R+   V DAGCGTGL GPL R  + TL+GVDLS GML  A  R++YDAL   ++   L     +    D++V+AD  V
Sbjct:  230 HHLSACLGEDVPDRASEAYIQDIFDKFAASFDTVLNRLDYRAPELVTQAVATLFPEPRQDLRVLDAGCGTGLCGPLLRPYAGTLVGVDLSSGMLRKAKGREIYDALVEADLVAYL---GREKAAFDVIVSADTLV 361
[Close]
BLAST of mRNA_H-elongata_contig50765.12328.1 vs. uniprot
Match: A0A6J5DE82_9BURK (Methyltransf_11 domain-containing protein n=1 Tax=Paraburkholderia humisilvae TaxID=627669 RepID=A0A6J5DE82_9BURK)

HSP 1 Score: 102 bits (254), Expect = 6.380e-23
Identity = 63/132 (47.73%), Postives = 76/132 (57.58%), Query Frame = 1 
Query:   28 MLGGSSMTKASP----EYVKALFDHYANTFDESL-KGLDYSSPDALREVLGSLRPKYREVFDAGCGTGLLGPLFRGISDTLIGVDLSEGMLEVAFERDVYDALAVGEIGEILRMRAEQGVQGDLVVAADVFV 408
            ML     T A P    +YV+ LFD +A +FDE L K L Y +P AL + LG +     +V DAGCGTGL GPL R  S TL+GVDLSEGMLE A  R  YD L  GE+G  L+         DL++ AD  V
Sbjct:  230 MLAACGTTDAPPRANDDYVRELFDGFAASFDEQLLKNLGYRAPQALVDALGDIGDSL-DVLDAGCGTGLCGPLLRARSRTLVGVDLSEGMLERARLRGCYDELVSGELGVYLQAHTHAY---DLILCADTLV 357
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50765.12328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L825_9PHAE4.050e-7285.07Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A7S3XSZ3_HETAK1.850e-3145.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4H644_VITBC9.910e-2743.97Methyltransf_12 domain-containing protein n=2 Tax=... [more]
A0A6U5CXU1_HEMAN1.700e-2542.47Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A3S0VPJ8_9GAMM2.410e-2443.97Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
UPI0018957CBA9.230e-2442.65tetratricopeptide repeat protein n=1 Tax=Methyloba... [more]
S9PD95_9DELT2.400e-2349.26Uncharacterized protein n=3 Tax=Cystobacter TaxID=... [more]
A0A2W4R676_9PROT2.930e-2343.38Methyltransferase n=1 Tax=Proteobacteria bacterium... [more]
UPI0006924B9E4.720e-2340.74tetratricopeptide repeat protein n=2 Tax=Methyloba... [more]
A0A6J5DE82_9BURK6.380e-2347.73Methyltransf_11 domain-containing protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50765contigH-elongata_contig50765:686..3962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score230.7
Seed ortholog evalue4.1e-58
Seed eggNOG ortholog2880.D8LBV8
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-20_003450.1
Exons5
Model size411
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50765.12328.1prot_H-elongata_contig50765.12328.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50765 686..3962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930833.1964672-CDS-H-elongata_contig50765:685..7601622930833.1964672-CDS-H-elongata_contig50765:685..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50765 686..760 +
1691679590.0227313-CDS-H-elongata_contig50765:685..7601691679590.0227313-CDS-H-elongata_contig50765:685..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50765 686..760 +
1622930833.2094316-CDS-H-elongata_contig50765:1377..15491622930833.2094316-CDS-H-elongata_contig50765:1377..1549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50765 1378..1549 +
1691679590.0346422-CDS-H-elongata_contig50765:1377..15491691679590.0346422-CDS-H-elongata_contig50765:1377..1549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50765 1378..1549 +
1622930833.2212572-CDS-H-elongata_contig50765:2543..26001622930833.2212572-CDS-H-elongata_contig50765:2543..2600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50765 2544..2600 +
1691679590.0438812-CDS-H-elongata_contig50765:2543..26001691679590.0438812-CDS-H-elongata_contig50765:2543..2600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50765 2544..2600 +
1622930833.2322216-CDS-H-elongata_contig50765:3048..30981622930833.2322216-CDS-H-elongata_contig50765:3048..3098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50765 3049..3098 +
1691679590.0553172-CDS-H-elongata_contig50765:3048..30981691679590.0553172-CDS-H-elongata_contig50765:3048..3098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50765 3049..3098 +
1622930833.2461529-CDS-H-elongata_contig50765:3905..39621622930833.2461529-CDS-H-elongata_contig50765:3905..3962Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50765 3906..3962 +
1691679590.0632312-CDS-H-elongata_contig50765:3905..39621691679590.0632312-CDS-H-elongata_contig50765:3905..3962Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50765 3906..3962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50765.12328.1

>prot_H-elongata_contig50765.12328.1 ID=prot_H-elongata_contig50765.12328.1|Name=mRNA_H-elongata_contig50765.12328.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MQCEHNLESMLGGSSMTKASPEYVKALFDHYANTFDESLKGLDYSSPDAL
REVLGSLRPKYREVFDAGCGTGLLGPLFRGISDTLIGVDLSEGMLEVAFE
RDVYDALAVGEIGEILRMRAEQGVQGDLVVAADVFV*
back to top

mRNA from alignment at H-elongata_contig50765:686..3962+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50765.12328.1 ID=mRNA_H-elongata_contig50765.12328.1|Name=mRNA_H-elongata_contig50765.12328.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3277bp|location=Sequence derived from alignment at H-elongata_contig50765:686..3962+ (Himanthalia elongata Himel1 dioecious)
ATGCAGTGTGAGCACAACCTGGAGAGCATGCTAGGTGGCTCGAGCATGAC
AAAAGCGTCGCCGGAGTACGTGAAGGTGAATGGGAAAGATGCTTTTTGTG
TGTGTGCCTATCTATGTCTTCCCCAGCGGGATTGGTATCTTGGCAGCGAT
GGAAAAAAAGTGGATGGGGATCGACGCTTTGAAGATGTTTCATAACAATT
TGGTTCACGTTCCCATCGCAAGCAACCGCGAACAACGCGACATCAAATCA
GCACATCGTTCTCTGTTTGTTGTGCCCAGCTCATGGCGATCCATTCTACG
CAAAAGCACTCACGGGGCGACATCCCACTGTTGTCTGCTCTTCGTGCCCA
GCTCCTAACAGTCATGAGACGATCATGGCAACCTTTTATTTCACAAGCGC
CCAACGATAAAATCGCCCAGCCTCTTCTCCTTTCGGTTTTGAGCGCAGCT
CGAGGCCGAGCCCCTTCTACACGAGACCCTAGAGATAATCGCCAAGCGTA
GTTCTACCTTTCTTTGTTGTTGGTGTTGTGACGTCAGCATCAGCGTTTTG
CTCGACCGCCGACTGCTTGACACAGACTTGTGGCGTCAGCATCAGCGTCA
ACTATCCCCCCCCCCCAACACGAACGCCTACTGCTTGATTCGCTCCTCTC
GATTCGGTGTGCGCGGGCGCCAACTAAAACAACAACCAAAAGGCGTTATT
CGACCACTACGCGAACACGTTCGACGAGAGCTTAAAGGGGCTCGACTACT
CTTCCCCGGACGCCCTGCGAGAGGTGCTGGGCAGCCTGAGGCCGAAGTAT
CGGGAGGTGTTTGACGCCGGCTGCGGGACGGGGCTCTTGGGGCCCCTCTT
CCGCGGCATCTCAGGTTATACTCTCCCCGATGCGTGCGGGTACAGTATCG
GGAAGGAGGACAAGCCGCTCTCCGTAGGACGAGGGAAGGGAGGGGATGGA
GCTATCGGGCAACCTCGAGCGTCTCCCCGTGTGAAGAACCTCTCCCCTCG
AGAATCCCAGGACATTGTTAAGCTGCTTTGTTGACCCTGTTGAGATCATT
TCATCTTGCCATGATCGTTGACGATACTCGGGACGTGCAAGGAAAGCGCC
GTATTGTTTATCTTTATCTGGCGTTTTTTTTCTTTCTTTTTTGTTTTTTG
TTTTTTTGAGAAGTGGCATCGCCTCACGGCGTTTGTATTTATTGTGGTGG
ATACTGTCTTTGGTACATGGCGATGGCGTTCCTCATGGGGGAGAGGGGGA
CGATGGTGGCATGGTGATGGGGAGAAAGTGGGGTTGCTACTGCCTCCGCT
CTTCGTAGATGGTAGTGATAGAAAAAAAAAGTTAAAATATTATATATATA
TCTACGAAGTATGTATATATTATTTTTATTATTAGTCGTATTATTATTAA
TAGTGATATTCTTCTTAAAAAAAACAAGTTATTATTATTATTTATCGCTT
TTAATACTAATCGTAGTAGTAGTATTAATAGTCGCCGTATTATTATCATT
ATTATTATTATTATTATTACTATTGTTATGAATATTAGTATTATTAGTAT
TATTAGTTTTATTATTATATTACTATTATTATTATTATTATTATTATTAT
TATTATTATTATTACTATTGTTATTATTATTATTATTACTATTATTATAT
TATTATTATTATTGTTATTATTTTGTTGATATTGCCTTCGGTCGGAGATC
CTGGCGTGGTTTCTGTCAAACCACACTGCGTGAGTGATGCGGTGCTAATT
ATTCTCGTCGAGAAGTCCCATCACCTGCACGATCTATATCGCTTTGCTCC
ATTAACCCCCACCCCCCCCCCCCCCTCCCTATCTATATTATCCTATATTA
TCTGCCAGATACTCTTATCGGGGTCGATCTGAGCGAGGGGATGCTAGAGG
TGGCGTTTGAGAGGGGTGAGCGAGGGGATGCTCTTCCCAAAGGCTTGCGT
CATTTTTATTTTCCCCTTCAGAGTTGTGTTTATATATACTACTTACTATA
TACTACTTACTATATACTACTTACATCGTTCGTTCGATAGCCTCGCTTAA
CGATATACCATGATATGCTATTCCATGTTATAGCCATTGAGCAGCTTTGT
TGAAGATTAAAGAGGGGACATGGCAAGACATGACAGAACTTCCCCATACG
GCCCGTGGGATAGGCATTGTCGATATTGTCGAGTCCTTTATCCCAGCCAA
CGCCAATATATCGAAATAAAACGACCCCAGGGACGACTCCAGCGAACCAT
TCCGTGAAATTTCCCTGCCTGAGCGACCTGAGCGAGCGCTGAATTACACG
CGCCCCTCTGCGCCCTCTCGTCCTCTTTTCCGTGTTCCTCTCCGTCTGGC
TGGGCTGTCGCAGATGTTTACGACGCTCTTGCCGTTGGGGAGATTGGGGA
AATCCTGCGCATGGTGAGGGGGGGGGGATTGTGGCCGCCGTAAGGTGTAA
CCATGGGCGCGAAGCGACTTGATTCAAGTCCAGATGAAGTATATTTGTGC
ACACTATTATTTTAAGTGTTACAGAGCTCAAAGTGGACGGGAAAGGCTTG
GGGAACCCCCTCCCCTAATAATTAGTTTATGGGGTCACCTAAATAGGCGG
CACCCGTTAGTTACTCAAAGCTACCTTAAGGACTGCTGGCTCAGTGCAGG
CGGACTCTCGGTATTAAAACGCCATCGGTACGCAATTGCGGGACCTGATG
AAATCGGGATTGGCCCAATGGCGGTTGACGGTAGAGATGGACGTCGTCGC
GGAAAACGAGAGGATCGAGAGGATCTCGGGAGTACGCACGAGATTCAGCC
TGGGTTGAGAGAACGGACTGACGCGGGACGGGACTGCGGAACCCGTTTCG
CGAGGCCAAATTCTCAGGCGCGAACGGGGACAGGGGAAAATTCATTTCCC
CTGTTCAGCTGGCCACTACTAGAGCAAGATGCAACCAAATCAGGTTGACC
TTACTCTGCTATATGTCATGACCACATAGCACACACCTAGACACATACAC
ACACATACCTTAAGACACACCTTAAGGAGTCGTGGCCCTCGTCAGGGTGC
TCAATCTTCGGGCATGCCCTTTTCCTCCTCTTTCCCCCGCTCGCCCTTTA
CCGCTGTCACGGCCCTTGCCCTTGCTCTTTCCCGCGTGGCCTCCACCTCT
ACCTCGACTTCCATATCTGGTTGGCCTCGGTGTGGACCGCGTGTTTTTGC
CTGCGCGCCGCCCCTCACAGCGGGCTGAGCAAGGAGTGCAGGGCGACCTC
GTCGTCGCGGCCGACGTGTTCGTGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig50765:686..3962+

>mRNA_H-elongata_contig50765.12328.1 ID=mRNA_H-elongata_contig50765.12328.1|Name=mRNA_H-elongata_contig50765.12328.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig50765:686..3962+ (Himanthalia elongata Himel1 dioecious)
ATGCAGTGTGAGCACAACCTGGAGAGCATGCTAGGTGGCTCGAGCATGAC
AAAAGCGTCGCCGGAGTACGTGAAGATGCAGTGTGAGCACAACCTGGAGA
GCATGCTAGGTGGCTCGAGCATGACAAAAGCGTCGCCGGAGTACGTGAAG
GCGTTATTCGACCACTACGCGAACACGTTCGACGAGAGCTTAAAGGGGCT
CGACTACTCTTCCCCGGACGCCCTGCGAGAGGTGCTGGGCAGCCTGAGGC
CGAAGTATCGGGAGGTGTTTGACGCCGGCTGCGGGACGGGGCTCTTGGGG
CCCCTCTTCCGCGGCATCTCAGGCGTTATTCGACCACTACGCGAACACGT
TCGACGAGAGCTTAAAGGGGCTCGACTACTCTTCCCCGGACGCCCTGCGA
GAGGTGCTGGGCAGCCTGAGGCCGAAGTATCGGGAGGTGTTTGACGCCGG
CTGCGGGACGGGGCTCTTGGGGCCCCTCTTCCGCGGCATCTCAGATACTC
TTATCGGGGTCGATCTGAGCGAGGGGATGCTAGAGGTGGCGTTTGAGAGG
GATACTCTTATCGGGGTCGATCTGAGCGAGGGGATGCTAGAGGTGGCGTT
TGAGAGGGATGTTTACGACGCTCTTGCCGTTGGGGAGATTGGGGAAATCC
TGCGCATGATGTTTACGACGCTCTTGCCGTTGGGGAGATTGGGGAAATCC
TGCGCATGCGGGCTGAGCAAGGAGTGCAGGGCGACCTCGTCGTCGCGGCC
GACGTGTTCGTGTGACGGGCTGAGCAAGGAGTGCAGGGCGACCTCGTCGT
CGCGGCCGACGTGTTCGTGTGA
back to top