prot_H-elongata_contig50741.12324.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50741.12324.1
Unique Nameprot_H-elongata_contig50741.12324.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length688
Homology
BLAST of mRNA_H-elongata_contig50741.12324.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 2.440e-24
Identity = 91/203 (44.83%), Postives = 110/203 (54.19%), Query Frame = 0
Query:    1 MSWSSFDSLDVRVDDQDVADIMDLGYRQRKPPRVPSTM-------AAQTTALGQRSA--PGYFPSRSSPRPSSXXXAPAP--PVNVTASFYNHGMALDWRTWNTVSREGSAT---GESVASTMPTAGSLDGGAIDG---------------GLRGPRGVFVPPVGVGNGSSFFGGQGLFSWPPLIYGRFPTEGTSGAWDISGG 174
            MS SSFDSLDVRVDDQD ADI+D  YR   P R+P+ +       AA  TAL Q  A  PGYF S SSPRP      P P  P      F++HGMALDWR       +G+A     ++ +ST+ TA S +G A +G               GL    G F P +G G+ +SFFGGQGLF WPP + GR   +  SGAW   GG
Sbjct:  478 MSCSSFDSLDVRVDDQDFADILDTAYR---PARMPAQLRGQQRAAAAAFTALRQPRAVAPGYFISPSSPRPRQTNPGPPPALPTAXXXXFHHHGMALDWRNCYGGRGDGTAARRGDDAASSTVATAESDEGSAGNGDDSGATPRNSNSPVRGLEASVGRFAPQMGGGS-TSFFGGQGLFMWPPSMVGR--ADERSGAWGGGGG 674          
BLAST of mRNA_H-elongata_contig50741.12324.1 vs. uniprot
Match: A0A6H5L3J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3J9_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 4.370e-23
Identity = 91/198 (45.96%), Postives = 106/198 (53.54%), Query Frame = 0
Query:    1 MSWSSFDSLDVRVDDQDVADIMDLGYRQRKPPRVPSTMAAQT-------TALGQRSA--PGYFPSRSSPRPSSXXXAPAP--PVNVTASFYNHGMALDWRTW------NTVSREGS-ATGESVASTMPTAGSL----DGGAID-------GGLRGPRGVFVPPVGVGNGSSFFGGQGLFSWPPLIYGRFPTEGTSGAW 169
            MS SSFDSLDVRVDDQD ADI+D+ YR   P R+P+ + AQ        TAL Q  A  PGYF S SSPRP      P P  P      F++HGMALDWR         T +R G  A   +VA+     GS     D GA         GGL    G F P +G G+ +SFFGGQGLF WPP +  R  T+  SGAW
Sbjct:  621 MSCSSFDSLDVRVDDQDFADILDMAYR---PARMPAQLRAQQRAAAAAFTALRQPRAVAPGYFISPSSPRPRQTNPGPPPALPTAXXXXFHHHGMALDWRNCYEGRGGGTAARRGDDAASSTVATAEHDEGSAGNGDDSGATPRNSNSPVGGLETSVGRFAPQLGGGS-TSFFGGQGLFMWPPSMVRR--TDERSGAW 812          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50741.12324.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHG7_ECTSI2.440e-2444.83LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L3J9_9PHAE4.370e-2345.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50741contigH-elongata_contig50741:640..3173 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50741.12324.1mRNA_H-elongata_contig50741.12324.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50741 640..3200 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50741.12324.1 ID=prot_H-elongata_contig50741.12324.1|Name=mRNA_H-elongata_contig50741.12324.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=688bp
MSWSSFDSLDVRVDDQDVADIMDLGYRQRKPPRVPSTMAAQTTALGQRSA
PGYFPSRSSPRPSSPRPAPAPPVNVTASFYNHGMALDWRTWNTVSREGSA
TGESVASTMPTAGSLDGGAIDGGLRGPRGVFVPPVGVGNGSSFFGGQGLF
SWPPLIYGRFPTEGTSGAWDISGGESTGSHQPGDSVDHPPDLGSSAASVP
GPEVKAGVDTPANEKGKVLAEGPEPADGKSTLTARGDPQAASGDNRDEES
QLGEGIQQVVEPVETVEPAEPWPSVDASAAAAVITDISCVAPPNTPAKAD
PDDNKVPAVVPIVAFGRTGDGEAPGARDGLQVSPTDRESRALLGDGVNIQ
PLMRASGGDDVDPDAQTSKSPTSVDVRAVTPEEKRPAAAVVVGYDAAIVT
APVENLAAGVAVAPGDPALNADQPAAPGGKCCSCSCHDSHHNTRPPPTPP
PARSRASRRHQRRRASAPGKQASTPAVTNDVGGTPGGKIPSGGNGERGDV
GGGNGGSSTGSASSAGLTLKSHLGRNVSETASAAFAVRGSSLERKSADYG
VGTPPRSGRLRPRSVRSAGRGRGRSGGSQSALVSHLSVRRRKSESGLAAT
AVAAASRFGEGARKSEPAVATSLSTSCFGEGAKSGPSGGGLTTPRSERTA
SVASAGNVVIGVDPRLPPGLTRLRPKRASSAASAGNVV
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