prot_H-elongata_contig50644.12313.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50644.12313.1
Unique Nameprot_H-elongata_contig50644.12313.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length102
Homology
BLAST of mRNA_H-elongata_contig50644.12313.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.760e-19
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 0
Query:    1 TSFVNNTCGANGGAMSLIQSSSVFFDSDQIIFSGNSAGISGGAVFLEDSEIRTILRNVLFLENSAQGGGGVYAMASGQVD--------NPTTFDNCNFTRNVASTTGGAV 102
            T+FVNNTCGANGGA++L+   +V   ++ + F GN+A ++GGAVF+  +    I     F+ NSAQ GG V  + SG +         NPTTFD+C+F  N A+ TGGA+
Sbjct:  561 TAFVNNTCGANGGALALLGGLAVNIGTENVSFIGNAAEVAGGAVFVSGTGFGPIFTGARFISNSAQVGGAVSTVGSGNLKENADISPPNPTTFDHCHFIDNRATATGGAI 670          
BLAST of mRNA_H-elongata_contig50644.12313.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 6.330e-18
Identity = 50/109 (45.87%), Postives = 68/109 (62.39%), Query Frame = 0
Query:    1 TSFVNNTCGANGGAMSLIQSSSVFFDSDQIIFSGNSAGISGGAVFLEDSEIRTILRNVLFLENSAQGGGGVYAMASGQVDN-------PTTFDNCNFTRNVASTTGGAV 102
            T+FVNNT G NGGA++L+   S+  ++++  F  NSA ++GGAV++ D+ I     +V+F  NSAQ GG V A+ SG V         PTTF  C FT N A+ TGGAV
Sbjct: 2238 TAFVNNTSGENGGALALLGGLSISVNTEETNFVDNSADLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSALGSGNVKGGENDQLLPTTFSRCRFTFNRATATGGAV 2346          
BLAST of mRNA_H-elongata_contig50644.12313.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.130e-17
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 0
Query:    1 TSFVNNTCGANGGAMSLIQSSSVFFDSDQIIFSGNSAGISGGAVFLEDSEIRTILRNVLFLENSAQGGGGVYAMASGQVDN-------PTTFDNCNFTRNVASTTGGAV 102
            T+FVNNT G NGGA++L+   S+  ++ +  F  NSA ++GGAV++ D+ I     +V+F  NSAQ GG V ++ SG V         PTTF  C FT N A+ TGGAV
Sbjct:  325 TAFVNNTSGENGGALALLGGLSISVNTGETSFVDNSANLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSSLGSGNVKGGENDQLLPTTFSRCRFTFNRATATGGAV 433          
BLAST of mRNA_H-elongata_contig50644.12313.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.460e-13
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = 0
Query:    1 TSFVNNTCGANGGAMSLIQSSSVFFD-SDQIIFSGNSAGISGGAVFLEDSEIRTILRNVLFLENSAQGGGGVYAMASG--------QVDNPTTFDNCNFTRNVASTTGGAV 102
            TSF NN CG NGGA++L+ +  +  + +  + F+ N+A ++GGAVF+  +       N  F  NSAQ GG V    SG        +  NPTTF+ C F  N A+ TGGA+
Sbjct:  914 TSFFNNACGGNGGAVTLLGACDLVVNPAASVRFTENAAAVAGGAVFVSGAGAGPAFANTTFTSNSAQVGGAVAVFGSGNSKGVADIEPPNPTTFERCWFVGNRATATGGAI 1024          
BLAST of mRNA_H-elongata_contig50644.12313.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.910e-11
Identity = 40/109 (36.70%), Postives = 57/109 (52.29%), Query Frame = 0
Query:    1 TSFVNNTCGANGGAMSLIQSSSVFFDSDQIIFSGNSAGISGGAVFLEDSEIRTILRNVLFLENSAQGGGGVYAMASGQVD--------NPTTFDNCNFTRNVASTTGGA 101
            T+FVNNTCG +GG ++     SV  D+  + FSGN+A ++GGAVF+  + +  +                V  + SG +         +PTTFD C+F  N AS TGGA
Sbjct:  531 TAFVNNTCGGSGGGLAAFDGLSVDIDTAGVTFSGNAAEVAGGAVFVSGAGVGFVFXXXXXXXXXXXXXXAVSIVGSGNLKGFFDLEWPSPTTFDRCSFVGNQASATGGA 639          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50644.12313.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G301_ECTSI2.760e-1944.55Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FHG7_ECTSI6.330e-1845.87LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FHH1_ECTSI2.130e-1744.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSC0_ECTSI2.460e-1339.64Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7FTL7_ECTSI1.910e-1136.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 29..45
e-value: 0.0047
score: 17.3
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 3..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50644contigH-elongata_contig50644:32..337 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50644.12313.1mRNA_H-elongata_contig50644.12313.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50644 32..337 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50644.12313.1 ID=prot_H-elongata_contig50644.12313.1|Name=mRNA_H-elongata_contig50644.12313.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
TSFVNNTCGANGGAMSLIQSSSVFFDSDQIIFSGNSAGISGGAVFLEDSE
IRTILRNVLFLENSAQGGGGVYAMASGQVDNPTTFDNCNFTRNVASTTGG
AV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence