prot_H-elongata_contig50567.12306.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig50567.12306.1
Unique Name	prot_H-elongata_contig50567.12306.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	264

Homology

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BLAST of mRNA_H-elongata_contig50567.12306.1 vs. uniprot
Match: D7G8Y1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Y1_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.120e-45
Identity = 86/189 (45.50%), Postives = 116/189 (61.38%), Query Frame = 0

Query:   21 VSWEEHFKQLHARSPPHMGFLNANAWQRDSIVMRVVGYDGFQVLVVLFLVLLFEALFSFDPSGFNSVRASDAFLVSLVFGAACGVFAIVSAALIKGKLQRLLVRDLASLKVQHRAGQGRRGRLDRLVHEWEIKARDRDFQPACISYEWYNGARQKLPRWVPPALTR------PRALAMYGSLSFAFMIV 203
             SWE+ FK  H        FLNAN WQR++I  R+   DGF  L+ LF+VL+ E ++SFDPS F S    DAFL  LVFGA+CGVFAI S  +++ KLQRL+VRD+A+LKVQ   G+  R  LD L+  W+  +  R FQPACISY+WY+G       +    L++      PR+L  +  L+FA  ++
Sbjct:   17 ASWEDRFKDKHPE------FLNANLWQREAIETRINAQDGFLFLIGLFVVLMLENMWSFDPSTFTSETRLDAFLALLVFGASCGVFAIFSMTMVRLKLQRLMVRDIAALKVQQVTGRANRSLLDGLLARWKASSAQRQFQPACISYDWYHGGGMNTSSFPTKILSKNWNPSCPRSLVKFAVLAFAATVL 199

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig50567.12306.1 vs. uniprot

BLAST of mRNA_H-elongata_contig50567.12306.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G8Y1_ECTSI	1.120e-45	45.50	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..54
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 115..189
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 215..219
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 55..73
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 74..92
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 220..242
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 243..263
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 190..214
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 93..114
None	No IPR available	TMHMM	TMhelix		coord: 189..211
None	No IPR available	TMHMM	TMhelix		coord: 221..243
None	No IPR available	TMHMM	TMhelix		coord: 55..77
None	No IPR available	TMHMM	TMhelix		coord: 92..114

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig50567	contig	H-elongata_contig50567:88..879 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig50567.12306.1	mRNA_H-elongata_contig50567.12306.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig50567 35..1462 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig50567.12306.1 ID=prot_H-elongata_contig50567.12306.1|Name=mRNA_H-elongata_contig50567.12306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
MSTSNINNNNNAGTNLPSWGVSWEEHFKQLHARSPPHMGFLNANAWQRDS
IVMRVVGYDGFQVLVVLFLVLLFEALFSFDPSGFNSVRASDAFLVSLVFG
AACGVFAIVSAALIKGKLQRLLVRDLASLKVQHRAGQGRRGRLDRLVHEW
EIKARDRDFQPACISYEWYNGARQKLPRWVPPALTRPRALAMYGSLSFAF
MIVSFGVAVAIRIADSKGMGWSLGFFVLVGGAAILPVVLVVLSSREPRGL
SNDEGTPFEGVFF*