mRNA_H-elongata_contig50470.12289.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 136 bits (342), Expect = 1.530e-34 Identity = 68/134 (50.75%), Postives = 88/134 (65.67%), Query Frame = 1
Query: 1 ECEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
EC GCS+AK + K I R T +R+DK R+FVD+ G K +AS+ GK Y ++V D+F+R W YF++ K D F FLA R G PS VE+VRSD GGEF G+FA +C I+QE T A S ++NGVAER
Sbjct: 698 ECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 831
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 136 bits (342), Expect = 1.530e-34 Identity = 68/134 (50.75%), Postives = 88/134 (65.67%), Query Frame = 1
Query: 1 ECEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
EC GCS+AK + K I R T +R+DK R+FVD+ G K +AS+ GK Y ++V D+F+R W YF++ K D F FLA R G PS VE+VRSD GGEF G+FA +C I+QE T A S ++NGVAER
Sbjct: 405 ECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 538
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 133 bits (335), Expect = 1.300e-33 Identity = 66/133 (49.62%), Postives = 86/133 (64.66%), Query Frame = 1
Query: 4 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
C GCS++K K I T R+DK R+FVD+ G K +AS+ GK Y ++V D+F+R TW YF++ K D + F FLA R G PS VE+VRSD GGEF G+FA +C I+QE T A S ++NGVAER
Sbjct: 605 CTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 737
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 133 bits (334), Expect = 1.770e-33 Identity = 68/133 (51.13%), Postives = 87/133 (65.41%), Query Frame = 1
Query: 4 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
C GCS++K + K I R T R+DK R+FVD+ G K AS+ GK Y ++V D+F+R TW YF+R K D + F FLA R G PS VE+VRSD GGEF G+FA +C I+QE T A S ++NGVAER
Sbjct: 165 CSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 297
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE) HSP 1 Score: 133 bits (334), Expect = 1.810e-33 Identity = 67/133 (50.38%), Postives = 91/133 (68.42%), Query Frame = 1
Query: 1 ECEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAE 396
EC GC AKGL KPI +T STRA K R+FVD+ G+ + S+ GK Y L+V D+++R+ YF++ K D FE +LA+ R G PS V VVRSD GGEF +G+F ++CR++ I+QE T A S ++NGVAE
Sbjct: 976 ECLGCLTAKGLSKPIPKT-STRAAKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAE 1107
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 131 bits (329), Expect = 8.640e-33 Identity = 64/133 (48.12%), Postives = 87/133 (65.41%), Query Frame = 1
Query: 4 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
C GCS+ K + K I T+ +DK R+FV++ G+K +ASI GK Y +++ D+F+R W YF+R K D + F FLA+ R G PS +E+VRSD GGEF G+FA +C I+QE T A S +FNGVAER
Sbjct: 426 CSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 558
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 127 bits (320), Expect = 7.060e-32 Identity = 66/133 (49.62%), Postives = 86/133 (64.66%), Query Frame = 1
Query: 4 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
C GCS++K + K I R T R+DK R+FVD+ G K IAS+ GK Y ++V D+F+R TW YF++ + D F FLA R PS VE+VRSD GGEF G+FA +C I+QE T A S ++NGVAER
Sbjct: 287 CSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 419
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 127 bits (320), Expect = 1.400e-31 Identity = 66/133 (49.62%), Postives = 85/133 (63.91%), Query Frame = 1
Query: 4 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
C GCS++K + K I T R+DK R+FVD+ G K IAS+ GK Y ++V D+F+R TW F+R K D + F FLA R G PS VE+VRSD GGEF G+F +C I+QE T A S ++NGVAER
Sbjct: 220 CSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAER 352
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE) HSP 1 Score: 124 bits (311), Expect = 2.020e-30 Identity = 60/132 (45.45%), Postives = 86/132 (65.15%), Query Frame = 1
Query: 4 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEFKGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
C GCS++KG KP+ ++TS+RA R+++D+ G+ SI G Y L++ D+FSR+T +F++ K D FE FLAD R G P V + R+D GGEF+G FA++CRRH I+QELT + + VAER
Sbjct: 456 CLGCSMSKGQVKPVQKSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTEGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAER 587
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE) HSP 1 Score: 113 bits (282), Expect = 2.300e-27 Identity = 61/153 (39.87%), Postives = 85/153 (55.56%), Query Frame = 1
Query: 4 CEGCSVAKGLG---------------------KPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEFKGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
C GCSV KG KP+ ++TSTRADK R+++D+ G+ SI Y L++ D+FSR+T +F++ K D FE FL D R P V + R+D+GGEF+G FA++ RRH I+QE T + K+N VAER
Sbjct: 169 CLGCSVFKGXXXXXXXXXXXXXXXXXXXXXQVKPVQKSTSTRADKKLFRVYLDLGGKMKTRSIGDHWYTLMIRDDFSRWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAER 321 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50470.12289.1 >prot_H-elongata_contig50470.12289.1 ID=prot_H-elongata_contig50470.12289.1|Name=mRNA_H-elongata_contig50470.12289.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp ECEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLback to top mRNA from alignment at H-elongata_contig50470:3288..3686+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50470.12289.1 ID=mRNA_H-elongata_contig50470.12289.1|Name=mRNA_H-elongata_contig50470.12289.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at H-elongata_contig50470:3288..3686+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50470:3288..3686+ >mRNA_H-elongata_contig50470.12289.1 ID=mRNA_H-elongata_contig50470.12289.1|Name=mRNA_H-elongata_contig50470.12289.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig50470:3288..3686+ (Himanthalia elongata Himel1 dioecious)back to top |