prot_H-elongata_contig50457.12286.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50457.12286.1
Unique Nameprot_H-elongata_contig50457.12286.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length198
Homology
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A6H5JKX1_9PHAE (RNB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKX1_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 4.120e-84
Identity = 144/194 (74.23%), Postives = 161/194 (82.99%), Query Frame = 0
Query:    2 HDFRNASFGVYCIDGKGTSFLDDAFSIDPETREVFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPTALKAMSFSDRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLLGAGQSQERATGSLARVAAEIRALEHVSRRSAEAGGRRERRREGVRLRVGSGGKVQATQMTQSRYA 195
            HDFR ASFGVYCIDG GT FLDDAFS+DPETREVFIHITDVQGLV  GSTLD++AR+RAASEYLPQGPLFMMPP ALKAMSFSD+ VNEA+TVGIRLDP+TG V SSRVMLT LPP +PLTF Q D LL A +  E   G LARVA EI+ALE+V RRSAEA GRRER REGV+ R G+GG+ QA ++  SR +
Sbjct:  485 HDFRGASFGVYCIDGAGTRFLDDAFSVDPETREVFIHITDVQGLVPTGSTLDDVARMRAASEYLPQGPLFMMPPMALKAMSFSDKGVNEAVTVGIRLDPKTGGVASSRVMLTTLPPAVPLTFDQTDRLLEATEKGETGDGRLARVAKEIQALEYVGRRSAEASGRRERGREGVKFRKGAGGETQALEVAASRQS 678          
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A835Z4W4_9STRA (RNB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W4_9STRA)

HSP 1 Score: 154 bits (390), Expect = 6.090e-40
Identity = 73/136 (53.68%), Postives = 97/136 (71.32%), Query Frame = 0
Query:    1 RHDFRNASFGVYCIDGKGTSFLDDAFSIDPETREVFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPTALKAMSFSDRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLLGAGQSQ 136
            R D+R A+F VYC+D    +F DDA S DP+ RE+ IH+ D Q LV  G  LD +A+ R  ++YLP+GPLFMMPP AL+A++FS  A NEAITV + +DP+TGAV  SR+MLT+LPPV+ LT   A+++L  G  Q
Sbjct:  362 RRDYRGAAFSVYCVDAPSANFYDDAVSWDPDARELLIHVVDAQLLVEDGGALDAVAQARVCTQYLPRGPLFMMPPAALQAIAFSADAPNEAITVALTIDPDTGAVTGSRLMLTVLPPVVALTHRDANAMLEGGHDQ 497          
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A482SRG6_9ARCH (RNB domain-containing ribonuclease n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRG6_9ARCH)

HSP 1 Score: 108 bits (271), Expect = 5.020e-24
Identity = 55/130 (42.31%), Postives = 81/130 (62.31%), Query Frame = 0
Query:    6 NASFGVYCIDGKGTSFLDDAFSIDPETREVFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPTALKAMSFSDRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLLGAGQS 135
            +AS  V CID K  +F DDA S+ PET E+ +H+ DV G +     L + A+ R +SEYLP G + M PP AL+A++FS +  NEAIT   ++D  +G+VL  RV  +I+ PV+     QA++++ A  S
Sbjct:  488 SASHPVMCIDAKSATFFDDAISLCPETGELLVHVIDVTGALRAHPELQQTAKERISSEYLPNGAIHMFPPKALEALTFSSKEPNEAITAAFKIDYASGSVLDYRVFPSIIGPVVSFDIDQANTIIEAKSS 617          
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A7S0ZJC8_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZJC8_9RHOD)

HSP 1 Score: 96.3 bits (238), Expect = 2.380e-20
Identity = 55/124 (44.35%), Postives = 72/124 (58.06%), Query Frame = 0
Query:   11 VYCIDGKGTSFLDDAFSIDPETRE-------VFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPTALKAMSFSDRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQAD 127
            V+CID    +F DDA S   E  E       V +HI DV   + P S LD +A+ RA S YLP GPL M+PP  ++A+SF+    +EA+TV + +DPE+G V    + LT LPP   LTF QA 
Sbjct:   66 VFCIDDAVANFRDDAISCS-EIEEFGKRFLVVSVHIADVDESIEPDSDLDAIAKDRAQSIYLPAGPLHMLPPVLMEALSFNAEYASEAVTVRMLIDPESGQVEHYSIKLTYLPPATILTFQQAS 188          
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A7S1TNE9_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TNE9_9RHOD)

HSP 1 Score: 87.0 bits (214), Expect = 2.000e-16
Identity = 46/129 (35.66%), Postives = 77/129 (59.69%), Query Frame = 0
Query:   13 CIDGKGTSFLDDAFSI-------DPETRE--VFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPTALKAMSFSDRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLLGA 132
            C+D  G +F DDA S           +R+  V +H+ DV  +V  GS LD+ AR RA S YLP GPL M+PP  ++A+SFS+ A ++A+++ + +  ++G ++  ++  +++PPV+  TF  A   + A
Sbjct:  338 CVDDVGANFRDDAVSCYELPSGDGHASRQIVVVVHVADVSAVVCEGSALDDAARNRAQSIYLPTGPLHMLPPVLMEAVSFSETAPSDAVSIAMTICTDSGELVRYKIARSLVPPVVCYTFDAAKEAISA 466          
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A2T2RE89_9CYAN (RNB domain-containing ribonuclease n=1 Tax=Cyanobacteria bacterium SW_9_44_58 TaxID=1919144 RepID=A0A2T2RE89_9CYAN)

HSP 1 Score: 72.8 bits (177), Expect = 1.620e-11
Identity = 49/138 (35.51%), Postives = 71/138 (51.45%), Query Frame = 0
Query:   11 VYCIDGKGTSFLDDAFSID--PETRE-VFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPT-ALKAMSFSDRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLLGAGQSQERATGSLA 144
            VY ID + T  +DD  SI+  P+ R+ ++IHI D   LV P   LD+ AR R+ S YLP G + M PP  A   MS     V+ A++ G+ LD   G +    +  +++ P   LT+   D +L  G + E     LA
Sbjct:  271 VYTIDDESTKEIDDGISIETLPDGRQQIWIHIADPTRLVQPEDELDQEARRRSTSLYLPTGMISMFPPELATGPMSLVQGQVSPAVSFGVILD-NNGEIADYTISASLVKPTYRLTYDDVDEMLELGVTAEPEIAQLA 407          
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A0P9EK12_RHOGW (RNB domain-containing protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A0P9EK12_RHOGW)

HSP 1 Score: 72.8 bits (177), Expect = 1.800e-11
Identity = 50/147 (34.01%), Postives = 75/147 (51.02%), Query Frame = 0
Query:    1 RHDFRNASFGVYCIDGKGTSFLDDAFSIDP----------ETREVFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPTALKAMSFSDRAVNEA------ITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLLG 131
            RHDF +A+  VY ID  G S LDD  S+ P          +T  V +H+ D   L+ PG  L +LAR+R  +EY P+    M+P   +     S  A+  A      +++G+R+D E+G VL + V + ++  V  LT+   D  LG
Sbjct:  687 RHDFGSAT--VYTIDDIGASELDDGISLAPGPPSSSSTGGKTWWVHVHVADPTALLHPGHLLAKLARVRDHTEYFPEKTWAMLPEQFVVGQRMSLGALEGAQQGQRVLSLGMRVDAESGEVLENEVKVGVVRDVRRLTYSAVDRALG 831          
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A7X8CYR9_9SPIR (RNB domain-containing ribonuclease n=1 Tax=Treponema sp. TaxID=166 RepID=A0A7X8CYR9_9SPIR)

HSP 1 Score: 68.6 bits (166), Expect = 4.520e-10
Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = 0
Query:   11 VYCIDGKGTSFLDDAFSIDPETREVFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPTALKAMSFSDRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLLGAGQSQE 137
             + ID   +   DDA S D   R+V++H+ D    + PGS  D  A  RAA+ YLP+  + M+P +AL         V+ A++V I L+PE G+V  + ++ + +  V  L++ QAD++LG+G   E
Sbjct:  235 AWAIDNAWSRDPDDAISFDG--RDVWVHVADPASAILPGSPADREAADRAATLYLPESSVPMLPDSALDRFGLGLSGVSRALSVRISLEPE-GSVREAEILPSFVK-VARLSYGQADTVLGSGPLAE 357          
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A328C5J8_9DELT (RNB domain-containing protein n=1 Tax=Lujinxingia litoralis TaxID=2211119 RepID=A0A328C5J8_9DELT)

HSP 1 Score: 68.6 bits (166), Expect = 4.690e-10
Identity = 54/148 (36.49%), Postives = 78/148 (52.70%), Query Frame = 0
Query:   14 IDGKGTSFLDDAFSIDPETR---EVFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPTALK-AMSFSDRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLLGAGQSQERATGSLARVAAEIRALEHVS 157
            ID   T  +DDA +I+P      E+ IHI D   LV+PGS LD+ AR RA S YLP G + M P    +  MS        AIT  +R D +  A++ + V+ +++     LT+ +AD+LL AG+  +  T  L       R LEH++
Sbjct:  301 IDDASTRDIDDALAINPTEDGGWELDIHIADPSALVAPGSLLDQEARRRATSVYLPTGVIPMFPHRLSEDRMSLLQDERRPAITTRVRFDADL-AIVDTTVIPSMVCVKKRLTYEEADALL-AGEGNDHVTQML-------RQLEHIA 439          
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: K0S3P0_THAOC (RNB domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3P0_THAOC)

HSP 1 Score: 68.6 bits (166), Expect = 4.810e-10
Identity = 52/151 (34.44%), Postives = 71/151 (47.02%), Query Frame = 0
Query:    4 FRNASFGVYCIDGKGTSFLDDAFSIDPETR------------EVFIHITDVQGLVSPGSTL---DELARLRAASEY-------LPQGPLFMMPPTALKAMSFS--DRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLL 130
            F  +S    CID K TSF DDA  I   +             EV IHI DV  +   G  L    ++A LR A+E        LP GPL ++PP ALKA+S    + + N  +T+   +D   G +L + +  T++     LTF  A SLL
Sbjct:  478 FDLSSLPCVCIDAKRTSFRDDAIGIRLRSSTGRKVSKAASKWEVLIHIADVSDIYLKGEGLLPSHDIALLRHAAEQRGMSRYDLPLGPLHLLPPVALKALSLKTDEDSCNRCVTLWAYIDERDGKLLEAGLERTLIASPTALTFADATSLL 628          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKX1_9PHAE4.120e-8474.23RNB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z4W4_9STRA6.090e-4053.68RNB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A482SRG6_9ARCH5.020e-2442.31RNB domain-containing ribonuclease n=1 Tax=archaeo... [more]
A0A7S0ZJC8_9RHOD2.380e-2044.35Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A7S1TNE9_9RHOD2.000e-1635.66Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A2T2RE89_9CYAN1.620e-1135.51RNB domain-containing ribonuclease n=1 Tax=Cyanoba... [more]
A0A0P9EK12_RHOGW1.800e-1134.01RNB domain-containing protein n=1 Tax=Rhodotorula ... [more]
A0A7X8CYR9_9SPIR4.520e-1034.65RNB domain-containing ribonuclease n=1 Tax=Trepone... [more]
A0A328C5J8_9DELT4.690e-1036.49RNB domain-containing protein n=1 Tax=Lujinxingia ... [more]
K0S3P0_THAOC4.810e-1034.44RNB domain-containing protein n=1 Tax=Thalassiosir... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001900Ribonuclease II/RSMARTSM00955RNB_2coord: 1..197
e-value: 3.8E-6
score: -43.3
IPR001900Ribonuclease II/RPFAMPF00773RNBcoord: 1..161
e-value: 1.8E-22
score: 80.1
NoneNo IPR availablePANTHERPTHR23355RIBONUCLEASEcoord: 1..184
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50457contigH-elongata_contig50457:788..2740 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50457.12286.1mRNA_H-elongata_contig50457.12286.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50457 788..2740 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50457.12286.1 ID=prot_H-elongata_contig50457.12286.1|Name=mRNA_H-elongata_contig50457.12286.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
RHDFRNASFGVYCIDGKGTSFLDDAFSIDPETREVFIHITDVQGLVSPGS
TLDELARLRAASEYLPQGPLFMMPPTALKAMSFSDRAVNEAITVGIRLDP
ETGAVLSSRVMLTILPPVLPLTFVQADSLLGAGQSQERATGSLARVAAEI
RALEHVSRRSAEAGGRRERRREGVRLRVGSGGKVQATQMTQSRYARR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001900RNase_II/R
IPR012340NA-bd_OB-fold