mRNA_H-elongata_contig115571.1229.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A6H5KP68_9PHAE (Eukaryotic translation initiation factor 3 subunit H n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP68_9PHAE) HSP 1 Score: 339 bits (870), Expect = 3.570e-111 Identity = 175/207 (84.54%), Postives = 189/207 (91.30%), Query Frame = 1
Query: 205 SLQENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALVFDLQEGDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKL---EQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQK 816
S QENLSDNSVVILYDPVQT+ GQL +KAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINAL+FDLQE DRVDCDFDRLDLSTNPYLEK+LEFLCNWIDDLSNEQ KFNQY RN+ RQK +QAR LQKRKQ NDERRAAG+ LP+++ AFDKK++ PNRME LLISNQI+AYC+QINKFAGSSFEKLFLAGSLQK
Sbjct: 128 SYQENLSDNSVVILYDPVQTANGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEEDRVDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQKQACWDQARLLQKRKQQNDERRAAGEEALPEEDSAFDKKLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQK 334
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A836CJJ9_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJJ9_9STRA) HSP 1 Score: 288 bits (738), Expect = 4.000e-91 Identity = 144/205 (70.24%), Postives = 174/205 (84.88%), Query Frame = 1
Query: 211 QENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALVFDLQE---GDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQK 816
QENLSDN+VV+LYDPVQT++GQL +KAYRLSK FMR YRE+K++ IKPSEIL+ELPI+IRNPG++NALV+DLQ +CDF+RLDLSTNPYLEK+LEFLC W+DDL+NEQ KF Y R L +Q+ + ARW +RK+ NDERRAAGD PLPDDE A D++ + PNRMESLLIS QI+AYC+QIN+F GSSFEKLFLAGSLQ+
Sbjct: 141 QENLSDNAVVVLYDPVQTARGQLTLKAYRLSKEFMRAYRERKSDHIKPSEILDELPIRIRNPGLVNALVYDLQGRGGAGSAECDFERLDLSTNPYLEKNLEFLCGWVDDLANEQWKFQAYTRTLLKQRHDAARWADRRKKANDERRAAGDEPLPDDE-AHDRRPDAPNRMESLLISTQISAYCSQINRFTGSSFEKLFLAGSLQR 344
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A6V1NQH4_HETAK (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NQH4_HETAK) HSP 1 Score: 229 bits (584), Expect = 2.890e-68 Identity = 118/207 (57.00%), Postives = 154/207 (74.40%), Query Frame = 1
Query: 205 SLQENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALVFDLQEGDR-VDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPD--DEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQK 816
S Q+NLSDNSVVILYDP+QTS G L +KA+RL++AFM R N I+PSEILEELP++IRNPG++NALV+D+ +G DC FDRLDL PYLEK+LEFLC W+DDL+ E KF Q+AR + +Q+ E+ RWL +R+ N+ERR G+ PLP+ D F + P R+ESLLI+NQI YC Q+N+F G+++ KL+LAGSL K
Sbjct: 125 SYQDNLSDNSVVILYDPIQTSNGTLTLKAFRLTQAFMERNRRGDNGFIRPSEILEELPVRIRNPGLLNALVYDVTQGPGGADCTFDRLDLGGRPYLEKNLEFLCAWVDDLAAEHQKFQQHARAVAKQRQERLRWLARRRHENEERRLDGEPPLPERPDPGMF-RAQGGPPRLESLLIANQINTYCAQVNRFTGAAYSKLYLAGSLHK 330
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A7S2RWA1_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RWA1_9STRA) HSP 1 Score: 200 bits (508), Expect = 5.670e-57 Identity = 104/196 (53.06%), Postives = 139/196 (70.92%), Query Frame = 1
Query: 229 NSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALVFDLQEGDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQK 816
NSVVILYDP+QT+KG+L ++A+RLS+ F+ + KNE I P+EILEELPIKIRNPG+INAL+FDLQ +R+DCDF+RLDLSTNP+LEK+LE+L W+DDL+ EQ KF R + +W +K+ + E +++ + P+RM SLL+SNQI+ YC+QI+ F G+SF KLFLAGSL K
Sbjct: 160 NSVVILYDPIQTAKGKLTLRAFRLSEKFVEAVKRDKNEFIPPAEILEELPIKIRNPGLINALLFDLQGNERLDCDFERLDLSTNPFLEKNLEYLSAWVDDLAQEQYKFQSEVR--------RDKWRRKQ----------------NPEGGAEEEFQAPDRMASLLVSNQISEYCSQIHHFTGASFGKLFLAGSLHK 331
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A1W0A1S4_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1S4_9STRA) HSP 1 Score: 180 bits (457), Expect = 1.410e-49 Identity = 94/203 (46.31%), Postives = 136/203 (67.00%), Query Frame = 1
Query: 211 QENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALVFDLQEGDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQKS 819
Q+NL DN++ I+YDP++T KG L +KAYRLS+ F Y+ + + I+ S ILEE+PI++ N I + +LQ+ C+FDRLDL+TN YLE SL+ L W D+L+ E KF Y R + +Q+ + A WLQKR++ N R+ G+ LP+++ A K + P+R+ESLLI+ Q+ YC IN+FAG SF KLFLA +L K+
Sbjct: 122 QKNLGDNAICIVYDPLETMKGTLSIKAYRLSETFQEQYKTQALKDIRSSNILEEIPIQLNNSEIAQCYLLELQKQSA--CEFDRLDLATNTYLENSLQNLSAWADELAQEHYKFQGYERAVAKQRTQIASWLQKRREENKIRQDNGEDLLPEEDPALFKPLNQPSRLESLLITKQMNTYCDNINRFAGKSFHKLFLADTLHKN 322
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A1V9YES0_9STRA (Eukaryotic translation initiation factor 3 subunit H n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YES0_9STRA) HSP 1 Score: 178 bits (451), Expect = 1.500e-48 Identity = 91/211 (43.13%), Postives = 139/211 (65.88%), Query Frame = 1
Query: 211 QENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREK--------KNEVIKPSEILEELPIKIRNPGIINALVFDLQEGDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQKS 819
Q+NL N++ I+YDP++T KG L +KA+RL+ AF+ Y+ K K + I+ + ++EE+PI++ N ++ + +LQ DC+FDRLDL+TN YLE SL+ L W D+L+ E KF Y R + +Q+ + +WL KR++ N RR G+ PLP+++ AF K + P+R+ESLLI+ Q+ YC IN++AG SF KLFLAG L ++
Sbjct: 126 QKNLGQNAICIVYDPLETMKGALSIKAFRLTDAFLETYKTKAFSKEGFAKGD-IRAATMIEEIPIELHNSDMVQCYLLELQAQKLGDCEFDRLDLATNAYLENSLQNLSAWADELAQEHYKFQGYERAVAKQRAQYQQWLLKRREENKLRRDNGEEPLPEEDPAFAKGLNQPSRLESLLITKQMNTYCDNINRYAGKSFHKLFLAGHLHQT 335
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A7S1GHL4_CYCTE (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GHL4_CYCTE) HSP 1 Score: 176 bits (445), Expect = 1.080e-47 Identity = 99/211 (46.92%), Postives = 129/211 (61.14%), Query Frame = 1
Query: 205 SLQENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALVFDLQEGD-------RVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQK 816
S Q LS N+VV+LYDP+QTS G L++K +RL++ +++ KN I PS+I EE+P+ I NPG+ L+ D+ G D FDRLDLSTNPYLEK LEFLC+W+DDL+ EQ KF +ARN R+ + KR++ + + +GD P RMESLLISNQI YC Q++KFAG F KLFLAG L K
Sbjct: 138 SYQTELSPNAVVVLYDPMQTSHGNLVLKCFRLTEECLQLQSSGKNTFIDPSKIFEEIPVDISNPGLTQVLLSDVATGRYGTDIVATTDTTFDRLDLSTNPYLEKHLEFLCSWVDDLATEQQKFQYFARNATRRSDRR-----KREEDKENKWLSGDAP---------------KRMESLLISNQIRGYCDQMDKFAGGGFSKLFLAGGLHK 328
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A6G0X4T5_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4T5_9STRA) HSP 1 Score: 174 bits (440), Expect = 7.300e-47 Identity = 90/209 (43.06%), Postives = 133/209 (63.64%), Query Frame = 1
Query: 211 QENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREK-------KNEVIKPSEILEELPIKIRNPGIINALVFDLQEGDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQK 816
Q+NL +N++ I+YDPV+T+KG L +KA+RL+ F Y+ + I+ + +LEE+PI I N ++ + DLQE D DFDRLDL+TN Y E SL+ L W D+L+ E KF Y R + +Q+ + +++QKR++ N RR GD LP+++ K + P+R+ESLLI+ Q+ YC IN++AG SF KLFLAG+L K
Sbjct: 134 QQNLGENAICIVYDPVETTKGSLALKAFRLTSTFCDQYKSQVFTKEGFAKADIRSTTLLEEIPIHINNSDLVKCYIADLQEQKLADSDFDRLDLATNGYFENSLQNLSAWADELAQEHYKFQGYERAMAKQRAQHQQFVQKRREDNKARRDNGDELLPEEDANAVKSLTQPSRLESLLITKQMNTYCENINRYAGKSFNKLFLAGNLHK 342
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: D8S8X2_SELML (Eukaryotic translation initiation factor 3 subunit H n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S8X2_SELML) HSP 1 Score: 172 bits (435), Expect = 3.820e-46 Identity = 99/212 (46.70%), Postives = 142/212 (66.98%), Query Frame = 1
Query: 211 QENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYR------EKKNEV-IKPSEILEELPIKIRNPGIINALVFDLQ-EGDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPDDE--FAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQK 816
QEN+ V I+YDP+++S+G L +KA RL+ +FM +YR EK E + +I EE+P++I N +++AL+ +L+ + CDFDRL LSTNP++EK+LEFL +DDLS EQ KF Y RNL RQ+ +Q WLQKR+ N RR AG+ PLP+D+ A K + P+R++S LI+NQI YC+QIN FAG SF K++L ++ +
Sbjct: 131 QENIK-RCVCIIYDPLRSSQGVLALKALRLTDSFMELYRSNNFNGEKLREKNVTWQDIFEEIPVRISNSALVSALMTELETDSPATQCDFDRLVLSTNPFMEKNLEFLIECMDDLSMEQQKFQFYYRNLARQQTQQQAWLQKRRAENMARRQAGEDPLPEDDPNNAVFKLIPEPSRLDSYLITNQIANYCSQINGFAGQSFSKIYLMDAVHE 341
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A485KKB4_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKB4_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.020e-45 Identity = 90/209 (43.06%), Postives = 132/209 (63.16%), Query Frame = 1
Query: 211 QENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREK-------KNEVIKPSEILEELPIKIRNPGIINALVFDLQEGDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQK 816
Q+NL N++ I+YDPV+T+KG L +KA+RL+ F Y+ + I+ S +LEE+PI I N ++ + +L + DC+FDRLDL+TN Y E SL L W D+L+ E KF Y R L +Q+ + +++QKR++ N RR GD LP+D+ F K + P+R+ESLLI+ Q+ YC IN++AG +F KLFLAG+L K
Sbjct: 132 QQNLGQNAICIVYDPVETTKGSLALKAFRLTSTFCDQYKSQVFTKEGFAKADIRSSTLLEEIPIHIHNSDLVKCYLEELHKQKLSDCEFDRLDLATNGYFESSLLNLSAWADELAQEHYKFQGYERALAKQRAQHQQFVQKRREENKIRRDNGDELLPEDDPNFFKNLNQPSRLESLLITKQMNTYCENINRYAGKNFNKLFLAGNLHK 340 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig115571.1229.1 >prot_H-elongata_contig115571.1229.1 ID=prot_H-elongata_contig115571.1229.1|Name=mRNA_H-elongata_contig115571.1229.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp MMKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALVFDLQback to top mRNA from alignment at H-elongata_contig115571:96..2032- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig115571.1229.1 ID=mRNA_H-elongata_contig115571.1229.1|Name=mRNA_H-elongata_contig115571.1229.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1937bp|location=Sequence derived from alignment at H-elongata_contig115571:96..2032- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig115571:96..2032- >mRNA_H-elongata_contig115571.1229.1 ID=mRNA_H-elongata_contig115571.1229.1|Name=mRNA_H-elongata_contig115571.1229.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig115571:96..2032- (Himanthalia elongata Himel1 dioecious)back to top |