prot_H-elongata_contig50423.12278.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50423.12278.1
Unique Nameprot_H-elongata_contig50423.12278.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length403
Homology
BLAST of mRNA_H-elongata_contig50423.12278.1 vs. uniprot
Match: A0A6H5KRV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV7_9PHAE)

HSP 1 Score: 417 bits (1072), Expect = 6.150e-138
Identity = 246/424 (58.02%), Postives = 279/424 (65.80%), Query Frame = 0
Query:    6 AQALAALNEYHSAISETSVTIRNKPAYLMGILRKYKQGQRAPLGNGMNGGIATTPNAMGRMGAGPNGLAPSITARLEKLYASDFIRKDDVDQRCLDFFRDLTETEAEAAMDEFSQSDIASIRNKSAFLMSILSLPNPAHSTLHIAHPREPLGQ----GNADGSLRCYIVAARKKAGG-----------GMYGPAGYGPTPMMG-YGYMDPSMAGQGHYPDYYGGAYGRPP--PLYNAYGQPMHGFFPHHMPHMPNMHMGPPGHMEILPPSIQLRLDHLAAVGFCQPAEIDDRCRKFLREVPEHVALQSIDEFQSVDRTYIRKVSAYFMGVIRKHAEQYRASAA-------DAMPMSSYDMGVKRMREAGDY-SFGRVAKPTGIAEVMERLATAPAKVQEGIRDLLARGVAQEWDIDVRVTNALL 403
            AQALAALNEYH+A+SETSV IRNKPAYLMGILRKYKQGQRAPLGNG  GG+ TTPNAMGRMGAGP+GL+PSI +RLEKLY S FI+K DVDQRC+ FFRDLTE EAEAAMDEF QSDI SIRNKSAFLMSIL                         G    +             G            MYG   +   P M  YGYMDPSM G   + ++YGG YG  P  PL+NAYGQPM  F P H+P      M   G  E+LP SIQLRLD LAA GFC   EIDDRCRKFLREVPEH+ALQ+I+EF S +R  IRKVSAY MGVIRKHA+ YR   A        A   S Y+ G+KR RE  D+ +  +  +P G + +MER+A APAKVQ GI DL+ +G+A EWDIDVRVTNA L
Sbjct:  178 AQALAALNEYHAAVSETSVNIRNKPAYLMGILRKYKQGQRAPLGNGTAGGMVTTPNAMGRMGAGPDGLSPSIASRLEKLYESGFIQKADVDQRCMVFFRDLTEKEAEAAMDEFGQSDITSIRNKSAFLMSILRXXXXXXXXXXXXXXXXXXXXXXXPGGRPAAXXXXXXXXXXXXXGMXXXXXXXXXXXMYGAHPFAGVPYMSPYGYMDPSMTGSVPFAEFYGGMYGHAPSMPLFNAYGQPMATFIPPHIP------MYQAGTTEMLPASIQLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRDFVAVGTSGGPPAGLPSPYEAGLKRYREYNDFWAKQQQPRPQGCSALMERIAGAPAKVQAGITDLIEKGIAMEWDIDVRVTNAFL 595          
BLAST of mRNA_H-elongata_contig50423.12278.1 vs. uniprot
Match: D8LG90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG90_ECTSI)

HSP 1 Score: 393 bits (1009), Expect = 9.140e-132
Identity = 231/408 (56.62%), Postives = 263/408 (64.46%), Query Frame = 0
Query:    6 AQALAALNEYHSAISETSVTIRNKPAYLMGILRKYKQGQRAPLGNGMNGGIATTPNAMGRMGAGPNGLAPSITARLEKLYASDFIRKDDVDQRCLDFFRDLTETEAEAAMDEFSQSDIASIRNKSAFLMSILSLPNPAHSTLHIAHPREPLGQGNADGSLRCYIVAARKKAGGGMYGPAGYGPTPMMGYGYMDPSMAGQGHYPDYYGGAYGRPPP--LYNAYGQPMHGFFPHHMPHMPNMHMGPPGHMEILPPSIQLRLDHLAAVGFCQPAEIDDRCRKFLREVPEHVALQSIDEFQSVDRTYIRKVSAYFMGVIRKHAEQYRASAA-------DAMPMSSYDMGVKRMREAGDY-SFGRVAKPTGIAEVMERLATAPAKVQEGIRDLLARGVAQEWDIDVRVTNALL 403
            AQALAALNEYH+A+SETSV IRNKPAYLMGILRKYKQGQRAPLGNG  GG+ TTPNAMGRMGAG +GL+PSI +RLEKLY S FI+K DVDQRC+ FFRDLTE EAEAAMDEF QSDI SIRNKSAFLMSIL                                                                  + H+ D+YGG YG  PP  L+NAYGQPM  F P HMP      M   G  E+LP SIQLRLD LAA GFC   EIDDRCRKFLREVPEH+ALQ+I+EF S +R  IRKVSAY MGVIRKHA+ YR   A        A   S Y+ G+KR+RE  D+ +  +  +P G + ++ER+A APAKVQ GI DL+ +G+A EWDIDVRVTNA L
Sbjct:   17 AQALAALNEYHAAVSETSVNIRNKPAYLMGILRKYKQGQRAPLGNGTAGGMVTTPNAMGRMGAGTDGLSPSIASRLEKLYESGFIQKADVDQRCMVFFRDLTEKEAEAAMDEFGQSDITSIRNKSAFLMSIL------------------------------------------------------------------RRHHQDFYGGMYGHAPPMPLFNAYGQPMATFIPPHMP------MYQAGTTEMLPASIQLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRGFVAVGTSGGPPAGLPSPYEAGLKRIREYNDFWAKQQQPRPQGGSALLERIAGAPAKVQAGITDLIEKGIAMEWDIDVRVTNAFL 352          
BLAST of mRNA_H-elongata_contig50423.12278.1 vs. uniprot
Match: A0A835Z7I3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I3_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.470e-10
Identity = 55/159 (34.59%), Postives = 80/159 (50.31%), Query Frame = 0
Query:   10 AALNEYHSAISETSVTIRN-KPAYLMGILRKYKQGQRAPLGNGMNGGIATTPN-----------------------AMGRMG------AGPNGLAPSITARLEKLYASDFIRKDDVDQRCLDFFRDLTETEAEAAMDEFS-QSDIASIRNKSAFLMSIL 137
            AALNEY   I++    IRN K AYL+G+LRKY+     P                                     A GRM       AGP+GL   +  +LE+LY  + +R+D +D RC+D  R++TE+EA AAM+E + + D+A+ R+ +  L+SIL
Sbjct:   48 AALNEYAYGIADAGPAIRNNKGAYLLGVLRKYQASTLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGRMPMRAMPQAGPDGLTRPVKIKLEQLYGMNVVRRDQMDGRCMDTLREMTESEALAAMNEVAGRRDVAAARDPTELLLSIL 206          
BLAST of mRNA_H-elongata_contig50423.12278.1 vs. uniprot
Match: A0A7S0LZI5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LZI5_9CRYP)

HSP 1 Score: 68.9 bits (167), Expect = 3.910e-9
Identity = 41/123 (33.33%), Postives = 71/123 (57.72%), Query Frame = 0
Query:   25 TIRNKPAYLMGILRKYKQGQRAPLGNGMNGGIATTPNAMGRMGAGPN----------GLAPSITARLEKLYASDFIRKDDVDQRCLDFFRDLTETEAEAAMDEFSQSDIASIRNKSAFLMSIL 137
            +IRNK A+L G++++++     PLGN      A +  +MG  G G            G+ P + ARLE ++AS  +R++++DQRCL+  R L E      + +F+++D++SI +K+ F M I+
Sbjct:  145 SIRNKSAFLAGVMKRFRT--ENPLGN------ALSAPSMGAYGPGLGLSSSFSGDTAGMIPGVQARLEAIFASGKVRREELDQRCLEQLRSLPEHVGLEVVGKFAEADLSSINSKAGFFMGII 259          
BLAST of mRNA_H-elongata_contig50423.12278.1 vs. uniprot
Match: A0A7S2LAC6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAC6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.380e-8
Identity = 43/130 (33.08%), Postives = 70/130 (53.85%), Query Frame = 0
Query:   11 ALNEYHSAISETSVTIRNKPAYLMGILRKYKQGQRAPLGNGMNGGIATTPNAMGRMGAGPNG--LAPSITARLEKLYASDFIRKDDVDQRCLDFFRDLTETEAEAAMDEFSQSDIASIRNKSAFLMSILS 138
            AL+EY+ A++    +IRN+ AYL G+L++Y                      +GR+G  P G  L P++  R+ +L  S F  ++D+++R L   + L E EA AAMDE + +   +IRN  ++ M IL+
Sbjct:  306 ALSEYNDAVTTKGSSIRNRQAYLHGVLKRYM-------------------TILGRVGGTPMGEALTPAVKERMTRLVDSGFCSQEDLNERVLSKIKMLPEKEALAAMDELATAKRDAIRNFGSYFMGILN 416          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50423.12278.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KRV7_9PHAE6.150e-13858.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG90_ECTSI9.140e-13256.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z7I3_9STRA5.470e-1034.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0LZI5_9CRYP3.910e-933.33Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S2LAC6_9STRA4.380e-833.08Hypothetical protein (Fragment) n=2 Tax=Leptocylin... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041337Heterogeneous nuclear ribonucleoprotein Q acidic domainPFAMPF18360hnRNP_Q_AcDcoord: 72..137
e-value: 2.2E-16
score: 59.5
coord: 254..320
e-value: 9.4E-15
score: 54.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50423contigH-elongata_contig50423:276..3422 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50423.12278.1mRNA_H-elongata_contig50423.12278.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50423 276..3422 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50423.12278.1 ID=prot_H-elongata_contig50423.12278.1|Name=mRNA_H-elongata_contig50423.12278.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=403bp
MLDGAAQALAALNEYHSAISETSVTIRNKPAYLMGILRKYKQGQRAPLGN
GMNGGIATTPNAMGRMGAGPNGLAPSITARLEKLYASDFIRKDDVDQRCL
DFFRDLTETEAEAAMDEFSQSDIASIRNKSAFLMSILSLPNPAHSTLHIA
HPREPLGQGNADGSLRCYIVAARKKAGGGMYGPAGYGPTPMMGYGYMDPS
MAGQGHYPDYYGGAYGRPPPLYNAYGQPMHGFFPHHMPHMPNMHMGPPGH
MEILPPSIQLRLDHLAAVGFCQPAEIDDRCRKFLREVPEHVALQSIDEFQ
SVDRTYIRKVSAYFMGVIRKHAEQYRASAADAMPMSSYDMGVKRMREAGD
YSFGRVAKPTGIAEVMERLATAPAKVQEGIRDLLARGVAQEWDIDVRVTN
ALL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041337hnRNP_Q_AcD