mRNA_H-elongata_contig50394.12273.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50394.12273.1
Unique NamemRNA_H-elongata_contig50394.12273.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50394.12273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50394contigH-elongata_contig50394:932..1522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_002440.1
Exons1
Model size592
Cds size468
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.4108803-UTR-H-elongata_contig50394:931..10541622930828.4108803-UTR-H-elongata_contig50394:931..1054Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50394 932..1054 +
1691679588.0462062-UTR-H-elongata_contig50394:931..10541691679588.0462062-UTR-H-elongata_contig50394:931..1054Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50394 932..1054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.4281118-CDS-H-elongata_contig50394:1054..15221622930828.4281118-CDS-H-elongata_contig50394:1054..1522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50394 1055..1522 +
1691679588.0587275-CDS-H-elongata_contig50394:1054..15221691679588.0587275-CDS-H-elongata_contig50394:1054..1522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50394 1055..1522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50394.12273.1prot_H-elongata_contig50394.12273.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50394 1055..1522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50394.12273.1

>prot_H-elongata_contig50394.12273.1 ID=prot_H-elongata_contig50394.12273.1|Name=mRNA_H-elongata_contig50394.12273.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MTLRRIRTMALIILPLVPNDVLLRATGFVAPPPTAGTLLRTKPPRDASST
GCSLPRDKPRPSRCSRSCARAMAAAGARRYSNTLSRPASRSTTTATIASH
GTRLSPASSCQGSMRRIIQTCCAPVGASVEESSSPCSSTDRLHGSSAAQD
GRASGE
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mRNA from alignment at H-elongata_contig50394:932..1522+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50394.12273.1 ID=mRNA_H-elongata_contig50394.12273.1|Name=mRNA_H-elongata_contig50394.12273.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=591bp|location=Sequence derived from alignment at H-elongata_contig50394:932..1522+ (Himanthalia elongata Himel1 dioecious)
GCTCGTACATGTCGAAACCAGAAACGACGGAGGGATAATATCTTGCCTTA
CTGCATCGTGGGAAGTAGCGGGAAGAAGCCTTCCACTTGTACTGTGTGTT
TAGTAAGTTGAAAAAAAACGAGTATGACATTGAGACGAATTCGAACGATG
GCCTTGATCATCTTGCCCCTTGTACCCAACGACGTCCTACTGAGGGCAAC
AGGCTTCGTGGCACCTCCTCCCACAGCTGGGACGCTACTTCGAACGAAAC
CCCCTCGTGATGCATCTTCAACAGGGTGTTCATTACCTCGTGACAAGCCG
AGACCTAGTAGATGCTCACGTTCATGCGCGCGCGCGATGGCTGCGGCGGG
GGCCCGTCGCTATAGCAACACGTTGTCCAGGCCGGCGTCGCGATCCACCA
CTACCGCGACGATCGCTTCGCACGGAACTCGCCTTAGTCCTGCCTCGAGC
TGCCAGGGTTCAATGAGAAGGATAATCCAGACTTGCTGCGCGCCCGTCGG
TGCCTCCGTAGAGGAGTCGTCATCCCCATGTTCGAGCACCGACCGATTAC
ACGGTAGCAGTGCGGCACAGGACGGACGAGCATCTGGAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig50394:932..1522+

>mRNA_H-elongata_contig50394.12273.1 ID=mRNA_H-elongata_contig50394.12273.1|Name=mRNA_H-elongata_contig50394.12273.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig50394:932..1522+ (Himanthalia elongata Himel1 dioecious)
ATGACATTGAGACGAATTCGAACGATGGCCTTGATCATCTTGCCCCTTGT
ACCCAACGACGTCCTACTGAGGGCAACAGGCTTCGTGGCACCTCCTCCCA
CAGCTGGGACGCTACTTCGAACGAAACCCCCTCGTGATGCATCTTCAACA
GGGTGTTCATTACCTCGTGACAAGCCGAGACCTAGTAGATGCTCACGTTC
ATGCGCGCGCGCGATGGCTGCGGCGGGGGCCCGTCGCTATAGCAACACGT
TGTCCAGGCCGGCGTCGCGATCCACCACTACCGCGACGATCGCTTCGCAC
GGAACTCGCCTTAGTCCTGCCTCGAGCTGCCAGGGTTCAATGAGAAGGAT
AATCCAGACTTGCTGCGCGCCCGTCGGTGCCTCCGTAGAGGAGTCGTCAT
CCCCATGTTCGAGCACCGACCGATTACACGGTAGCAGTGCGGCACAGGAC
GGACGAGCATCTGGAGAAATGACATTGAGACGAATTCGAACGATGGCCTT
GATCATCTTGCCCCTTGTACCCAACGACGTCCTACTGAGGGCAACAGGCT
TCGTGGCACCTCCTCCCACAGCTGGGACGCTACTTCGAACGAAACCCCCT
CGTGATGCATCTTCAACAGGGTGTTCATTACCTCGTGACAAGCCGAGACC
TAGTAGATGCTCACGTTCATGCGCGCGCGCGATGGCTGCGGCGGGGGCCC
GTCGCTATAGCAACACGTTGTCCAGGCCGGCGTCGCGATCCACCACTACC
GCGACGATCGCTTCGCACGGAACTCGCCTTAGTCCTGCCTCGAGCTGCCA
GGGTTCAATGAGAAGGATAATCCAGACTTGCTGCGCGCCCGTCGGTGCCT
CCGTAGAGGAGTCGTCATCCCCATGTTCGAGCACCGACCGATTACACGGT
AGCAGTGCGGCACAGGACGGACGAGCATCTGGAGAA
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