mRNA_H-elongata_contig50386.12271.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50386.12271.1
Unique NamemRNA_H-elongata_contig50386.12271.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50386.12271.1 vs. uniprot
Match: D8LMA4_ECTSI (B30.2/SPRY domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA4_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 5.530e-15
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 GVVISRSAEDCAPQLTLS-KDQLIVTGNRGFRMARATHGVSHGTW 132
            GVVISRSAEDCAPQLT+  KDQL VTG++GFRMARAT GVS+GTW
Sbjct:   85 GVVISRSAEDCAPQLTMPHKDQLTVTGHKGFRMARATKGVSNGTW 129
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BLAST of mRNA_H-elongata_contig50386.12271.1 vs. uniprot
Match: A0A6H5JYI9_9PHAE (B30.2/SPRY domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI9_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.950e-15
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 GVVISRSAEDCAPQLTLS-KDQLIVTGNRGFRMARATHGVSHGTW 132
            GVVISRSAEDCAPQLT+  KDQL VTG++GFRMARAT GVS+GTW
Sbjct:   87 GVVISRSAEDCAPQLTMPHKDQLTVTGHKGFRMARATKGVSNGTW 131
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BLAST of mRNA_H-elongata_contig50386.12271.1 vs. uniprot
Match: A0A835YSC8_9STRA (Concanavalin A-like lectin/glucanase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 8.740e-11
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 GVVISRSAEDCAPQLTLSKDQLIVTGNRGFRMARATHGVSHGTW 132
            GV +SR+  DCAPQL LSKDQL VTG +GFRM RAT G S G W
Sbjct:    1 GVALSRT--DCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAW 42
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BLAST of mRNA_H-elongata_contig50386.12271.1 vs. uniprot
Match: A0A4Y6EQW9_9BILA (Set1 Ash2 histone methyltransferase complex subunit ASH2 n=2 Tax=Brachionus koreanus TaxID=1199090 RepID=A0A4Y6EQW9_9BILA)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-8
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   19 SAEDCAPQLTLSKDQLIVTGNRGFRMARATHGVSHGTW 132
            S  D APQL LS D++IVTG +G+ M RATHGVSHG W
Sbjct:  329 SLHDRAPQLKLSDDRMIVTGEKGYSMIRATHGVSHGMW 366
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BLAST of mRNA_H-elongata_contig50386.12271.1 vs. uniprot
Match: UPI00156A2EA2 (set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X2 n=4 Tax=Maniola TaxID=111919 RepID=UPI00156A2EA2)

HSP 1 Score: 54.7 bits (130), Expect = 1.890e-7
Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    7 VISRSAEDCAPQLTLSKDQLIVTGNRGFRMARATHGVSHGTW 132
            ++  +  D APQL +S+D+L VTG++G+ M RATHGVS GTW
Sbjct:  120 IVLLALHDRAPQLKISEDRLAVTGDKGYCMVRATHGVSRGTW 161
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BLAST of mRNA_H-elongata_contig50386.12271.1 vs. uniprot
Match: A0A293MSM6_ORNER (B30.2/SPRY domain-containing protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MSM6_ORNER)

HSP 1 Score: 54.7 bits (130), Expect = 1.910e-7
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   28 DCAPQLTLSKDQLIVTGNRGFRMARATHGVSHGTW 132
            D APQL LS+D+LIVTG +G+ M RATHGV  GTW
Sbjct:  362 DRAPQLRLSEDRLIVTGEKGYCMVRATHGVEEGTW 396
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BLAST of mRNA_H-elongata_contig50386.12271.1 vs. uniprot
Match: A0A813MEN0_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813MEN0_9BILA)

HSP 1 Score: 54.7 bits (130), Expect = 1.910e-7
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   13 SRSAEDCAPQLTLSKDQLIVTGNRGFRMARATHGVSHGTW 132
            S +  D APQL LS D+  VTG +G+ M RATHGVSHG+W
Sbjct:  327 SLALHDRAPQLKLSDDRTCVTGEKGYSMVRATHGVSHGSW 366
[Close]
BLAST of mRNA_H-elongata_contig50386.12271.1 vs. uniprot
Match: UPI001E687FCA (set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X1 n=2 Tax=Maniola TaxID=111919 RepID=UPI001E687FCA)

HSP 1 Score: 54.7 bits (130), Expect = 1.910e-7
Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    7 VISRSAEDCAPQLTLSKDQLIVTGNRGFRMARATHGVSHGTW 132
            ++  +  D APQL +S+D+L VTG++G+ M RATHGVS GTW
Sbjct:  318 IVLLALHDRAPQLKISEDRLAVTGDKGYCMVRATHGVSRGTW 359
[Close]
BLAST of mRNA_H-elongata_contig50386.12271.1 vs. uniprot
Match: A0A7M7HN17_STRPU (B30.2/SPRY domain-containing protein n=4 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7HN17_STRPU)

HSP 1 Score: 54.3 bits (129), Expect = 2.610e-7
Identity = 22/35 (62.86%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   28 DCAPQLTLSKDQLIVTGNRGFRMARATHGVSHGTW 132
            D APQL +S+D+L+VTG+RG+ M RATHG+S G+W
Sbjct:  524 DRAPQLKISEDRLLVTGDRGYCMTRATHGISRGSW 558
[Close]
BLAST of mRNA_H-elongata_contig50386.12271.1 vs. uniprot
Match: A0A0D2LL26_9CHLO (Set1/Ash2 histone methyltransferase complex subunit ASH2 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LL26_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 3.450e-7
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   10 ISRSAEDCAPQLTLSKDQLIVTGNRGFRMARATHGVSHGTW 132
            ++ S  D APQL LS+D+L VTG++G+R+ RATHG   GTW
Sbjct:   72 VALSKADRAPQLQLSEDRLSVTGHKGYRLIRATHGAHEGTW 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50386.12271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMA4_ECTSI5.530e-1582.22B30.2/SPRY domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JYI9_9PHAE8.950e-1582.22B30.2/SPRY domain-containing protein n=1 Tax=Ectoc... [more]
A0A835YSC8_9STRA8.740e-1168.18Concanavalin A-like lectin/glucanase domain-contai... [more]
A0A4Y6EQW9_9BILA2.910e-865.79Set1 Ash2 histone methyltransferase complex subuni... [more]
UPI00156A2EA21.890e-754.76set1/Ash2 histone methyltransferase complex subuni... [more]
A0A293MSM6_ORNER1.910e-768.57B30.2/SPRY domain-containing protein (Fragment) n=... [more]
A0A813MEN0_9BILA1.910e-760.00Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
UPI001E687FCA1.910e-754.76set1/Ash2 histone methyltransferase complex subuni... [more]
A0A7M7HN17_STRPU2.610e-762.86B30.2/SPRY domain-containing protein n=4 Tax=Stron... [more]
A0A0D2LL26_9CHLO3.450e-756.10Set1/Ash2 histone methyltransferase complex subuni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50386contigH-elongata_contig50386:140..1792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue7.2e-12
Seed eggNOG ortholog2880.D8LMA4
Preferred nameASH2L
KEGG koko:K13113,ko:K14964,ko:K14967
KEGG Pathwayko04212,ko04934,map04212,map04934
GOsGO:0000003,GO:0000228,GO:0000723,GO:0000785,GO:0000790,GO:0000791,GO:0000902,GO:0000904,GO:0001067,GO:0001932,GO:0001933,GO:0002009,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002520,GO:0002682,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005703,GO:0005719,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007444,GO:0007472,GO:0007474,GO:0007476,GO:0007552,GO:0007560,GO:0007568,GO:0008013,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008284,GO:0008340,GO:0008757,GO:0009058,GO:0009059,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009791,GO:0009793,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009965,GO:0009987,GO:0010016,GO:0010033,GO:0010154,GO:0010228,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0014070,GO:0016043,GO:0016070,GO:0016278,GO:0016279,GO:0016358,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019899,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030097,GO:0030154,GO:0030182,GO:0031056,GO:0031057,GO:0031058,GO:0031060,GO:0031062,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031401,GO:0031490,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032200,GO:0032259,GO:0032268,GO:0032269,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033044,GO:0033127,GO:0033128,GO:0033554,GO:0033993,GO:0034401,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034968,GO:0035075,GO:0035097,GO:0035107,GO:0035114,GO:0035120,GO:0035209,GO:0035220,GO:0035239,GO:0035295,GO:0036211,GO:0036314,GO:0040029,GO:0042054,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043627,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0044666,GO:0045595,GO:0045637,GO:0045652,GO:0045814,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0048096,GO:0048188,GO:0048189,GO:0048316,GO:0048366,GO:0048367,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048563,GO:0048569,GO:0048608,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048812,GO:0048813,GO:0048827,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051569,GO:0051571,GO:0051716,GO:0060249,GO:0060255,GO:0060290,GO:0060322,GO:0060429,GO:0060562,GO:0060776,GO:0061458,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071339,GO:0071704,GO:0071840,GO:0080090,GO:0080182,GO:0090304,GO:0097159,GO:0097305,GO:0097549,GO:0097659,GO:0098687,GO:0099402,GO:0120036,GO:0120039,GO:0140096,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901654,GO:1901700,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1904837,GO:1905268,GO:1905269,GO:1905392,GO:1990188,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.euchromatin binding
EggNOG OGsKOG2626@1,KOG2626@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSPRY domain
Ec32 orthologEc-05_002090.1
Exons2
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.2804854-CDS-H-elongata_contig50386:139..2171622930828.2804854-CDS-H-elongata_contig50386:139..217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50386 140..217 -
1691679588.005914-CDS-H-elongata_contig50386:139..2171691679588.005914-CDS-H-elongata_contig50386:139..217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50386 140..217 -
1622930828.29256-CDS-H-elongata_contig50386:1735..17921622930828.29256-CDS-H-elongata_contig50386:1735..1792Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50386 1736..1792 -
1691679588.018826-CDS-H-elongata_contig50386:1735..17921691679588.018826-CDS-H-elongata_contig50386:1735..1792Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50386 1736..1792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50386.12271.1prot_H-elongata_contig50386.12271.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50386 140..1792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50386.12271.1

>prot_H-elongata_contig50386.12271.1 ID=prot_H-elongata_contig50386.12271.1|Name=mRNA_H-elongata_contig50386.12271.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
GVVISRSAEDCAPQLTLSKDQLIVTGNRGFRMARATHGVSHGTW*
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mRNA from alignment at H-elongata_contig50386:140..1792-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50386.12271.1 ID=mRNA_H-elongata_contig50386.12271.1|Name=mRNA_H-elongata_contig50386.12271.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1653bp|location=Sequence derived from alignment at H-elongata_contig50386:140..1792- (Himanthalia elongata Himel1 dioecious)
GGGGTCGTCATCTCCCGCTCGGCGGAGGACTGCGCGCCTCAGCTAACCCT
ATCTAAGGTGAGCGTGAGGGTGAGCATGTAGGGGAAACTTATCCTATATT
ATCACCGCACACAACTCGATCCGGTTCCGGCGGGGCCTAGAATTAGCGAG
TTTATGCCTCTTAGCTTAGTATGGAAGCAGCTCACGTACAGCGTACAGCA
TGTTCAACCAAAAGTGGACGTGCGAAAAGAAGTCCATGGGGTTGGTTGCC
TGAAAAGGCTGCACCCGTTATTCAAGCGACCTTAAGGACTGCTGCTGGCT
CAATGCCGATGGACTCTCAGGAGTGCCGGTGGACTCTCAGGGATGTGTGC
GGTGATGACGTCATCACATATAGCGGAGTAAGGATCAACTGGATTTGGTT
GCCAATCCTGCTTGTGGCCAGCTAAGCAGGAAAATGAATTTTCCCCTGTC
CCCGTTCGCGCCTGGGAATTTGGTCTCGCGAGACGGATTTGACCGCCCCG
TTCCGCGTCAGCCTGCTCATTCTCTCAACCCAGGCTGAGTCTGGTGTGTA
CTCCCCGGATTCTTTCGATCCCTTTCGTTTTCCGCGACGGCGTCCATCTC
TATCGTCAACCGCCTTATCCCGAGTTCATTAGGTCACTTAATCGTGTACC
GAAAGTCCGCCGGTACTGAGCCAGCAGTCCTGAAGGTAGCTTGAGTAACG
GGTGAAGCCTATTCAGGTAACCCTATGGACCAATTATTGTGCGCCTCTCT
TTTCCCACACCCACTATTAGTAGAGTGGGCATGTGCGATACAGTCAGTCA
CATACAGTATCGGAGGCGGTGAACCCTATCGATACGCAATTGCGTGACCG
GATGAAAACGGAATTGACCCGATGGCGGTTTGACGGTTGACGGTTGACGG
TAGAGATGGACCCCGCCCCGGAAAGCGGGGGAGGAACGAGAGGATCCCGG
GAGTAAGCACCTGTTTTAATCTTTTTTTTGTTTTTGTTTTGCCTGTTTTA
ATATTTTTTCTGTTTTGCCTGTTTTAATCATAATTCTGTTTGGCCTGTTT
AGAACAACACCTGTACACAGCGCTAAACCATACTATAGTTTTGCCTTTTT
GATAAAAAAATATATATTTCGGTCGTTGTTCATATATTTTTTTCCAGGGC
AGAAAATATCCGCAAATCTTCCGTTCTCCATCTATAATAGACCAATACAA
CCAATTCTGAACCGTCCCACTCGGATTCAGCTTTTTAGGTAGGACTCTTG
TCATAACGGCCCATGCCACAGAACGCCTCACAGAAGGGAAAGCTCGATGG
CATCCCCGCTGCGCACATGCTCAAGCGCGCGCGTACCTTCGTTGGGGGTG
GCAGGAAGAAATTAAATGCACGGGAAACTCGAAAGGAAATATAAATGGCT
TGATGACCAAATATTGGGGGAACAAATGACCAAAAAGCGCTGCCGAGTAC
AGATTGTGTTCTTTTGATTGATTAATCGATGTCTTGGGTCGTGTCGCCAT
TTGCGATCGGTGTATCGTTTTCCAATCCGTCCCTTCCCCCGTTACCCCCA
TATTTGATACTTTTTGTTGTTGTAGGATCAGCTTATCGTGACAGGCAACA
GAGGCTTTAGGATGGCGAGGGCAACCCATGGGGTGTCGCACGGGACGTGG
TGA
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Coding sequence (CDS) from alignment at H-elongata_contig50386:140..1792-

>mRNA_H-elongata_contig50386.12271.1 ID=mRNA_H-elongata_contig50386.12271.1|Name=mRNA_H-elongata_contig50386.12271.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig50386:140..1792- (Himanthalia elongata Himel1 dioecious)
GGGGTCGTCATCTCCCGCTCGGCGGAGGACTGCGCGCCTCAGCTAACCCT
ATCTAAGGGGGTCGTCATCTCCCGCTCGGCGGAGGACTGCGCGCCTCAGC
TAACCCTATCTAAGGATCAGCTTATCGTGACAGGCAACAGAGGCTTTAGG
ATGGCGAGGGCAACCCATGGGGTGTCGCACGGGACGTGGTGAGATCAGCT
TATCGTGACAGGCAACAGAGGCTTTAGGATGGCGAGGGCAACCCATGGGG
TGTCGCACGGGACGTGGTGA
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