mRNA_H-elongata_contig115491.1226.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: D8LCC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC8_ECTSI) HSP 1 Score: 233 bits (593), Expect = 7.870e-71 Identity = 115/166 (69.28%), Postives = 136/166 (81.93%), Query Frame = 1
Query: 1 AYANLLEGNPFFSGDSSTAHHGKESEAQKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIGSTDHENPADDPNITVERFERSFQENEELGLNDMNTDGYESLPEGYVRP--LESLSTLAEGE--GEESAAHLIPHRVGTDHPIPFTKGQEEADNTRADGSRVPP 486
A +L+EGNPFFSGDS+TAHHGKES+ Q+KFR F+E F AL+AGE LPFT++V DPLGNSFIGS++HENPADDP +TVE FER+F+ENEELGLNDMNTD +E+LPEGYVRP + S+ A G+ G E A HLIPHRVGTDHP FTKGQEEAD+T DG+ P
Sbjct: 413 ARTSLVEGNPFFSGDSATAHHGKESDVQRKFRIFLERFGALIAGESLPFTLVVRDPLGNSFIGSSEHENPADDPQMTVEWFERTFEENEELGLNDMNTDDFETLPEGYVRPPVAQPGSSGAPGQEGGGEGATHLIPHRVGTDHPTAFTKGQEEADDTVTDGAFASP 578
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: A0A6H5K257_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K257_9PHAE) HSP 1 Score: 169 bits (427), Expect = 9.900e-51 Identity = 90/139 (64.75%), Postives = 104/139 (74.82%), Query Frame = 1
Query: 112 FRALVAGEVLPFTMIVGDPLGNSFIGSTDHENPADDPNIT---------VERFERSFQENEELGLNDMNTDGYESLPEGYVRP-----LESLSTLAEGEGEESAAHLIPHRVGTDHPIPFTKGQEEADNTRADGSRVPP 486
F AL+AGE LPFT++V DPLGNSFIGS++HENPADDP +T VE FER+FQENEELGLND+NTD +E+LPEGYVRP + S + EG G SAAHLIPHRVGTDHP FTKGQEEAD+T DG+ P
Sbjct: 22 FGALIAGESLPFTLVVRDPLGNSFIGSSEHENPADDPKMTALNFDLGGVVEWFERTFQENEELGLNDINTDDFETLPEGYVRPPVAQPVSSGAPEQEG-GGGSAAHLIPHRVGTDHPTAFTKGQEEADDTVTDGTFASP 159
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: A0A7S4DIZ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIZ4_HETAK) HSP 1 Score: 112 bits (279), Expect = 3.830e-26 Identity = 69/152 (45.39%), Postives = 92/152 (60.53%), Query Frame = 1
Query: 10 NLLEGNPFFSGDSSTAHH----GKESEAQKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIGSTDHENPADDPNITVERFERSFQENEELGLNDMNTDGYESLPEGYVRPLESLSTLAEGEGEESAAHLI-PHRVGTDHPIPFTKGQEEA 450
NL EGNPF +GDS+T HH G + + +F AFM + ++ +VLPFT+ + DPLGNSFIGS EN +DP I E +ERS +ENE+LGLNDM T+GYE EG +E+ T A + ++ H+ G DHP F KG +A
Sbjct: 199 NLEEGNPFAAGDSATKHHAPADGPGAATRDRFLAFMGRLQDVIDKKVLPFTLELVDPLGNSFIGSR-LENFLEDPQIHSEDYERSHEENEDLGLNDMKTEGYE---EGEPGAVETTGTEAPKKEPILPDRVVMAHKRGPDHPHQFAKGCNDA 346
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: A0A4D9D461_9STRA (Zpr1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D461_9STRA) HSP 1 Score: 103 bits (257), Expect = 3.290e-23 Identity = 66/163 (40.49%), Postives = 86/163 (52.76%), Query Frame = 1
Query: 10 NLLEGNPFFSGDSSTAHHGKESEA-------------QKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIGSTDHENPADDPNITVERFERSFQENEELGLNDMNTDGYESLPEGYVRPLESLSTLAEGEGEESAAHLIPHRVGTDHPIPFTKGQEEADNT 459
+L EGNPF GDS+ HH E E Q++FR FM LV G PFT+ + DPLGNSFI S ++PA D +T E + RS+ E+E+LGL+DM T+G+E+ EG STL PH G DHPI FT+G ++ T
Sbjct: 220 HLQEGNPFGMGDSAVKHHLGEEEGKEGGGGKAEGKTLQERFRVFMRRLDDLVEGRSFPFTLELRDPLGNSFI-SFQGDSPAADTRLTTESYTRSWDEDEQLGLHDMATEGFETGYEGQGGKESLRSTL----------QTHPHVHGGDHPIHFTRGCDDGART 371
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: A0A7S2XY77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY77_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 3.050e-21 Identity = 66/149 (44.30%), Postives = 84/149 (56.38%), Query Frame = 1
Query: 10 NLLEGNPFFSGDSSTAHH---GKESEAQKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIGSTDHE---NPADDPNITVERFERSFQENEELGLNDMNTDGYESLPEGYVRPLESLSTLAEGEGEESAAHLIPHRVGTDHPIPFTKG 438
NLLEGNPF GDS+ HH G + A+ + F++ + G+VLPFT+ V DPL NSFIG + N DDP I VE +ERSFQENE+LGL+D+NT+ Y S+ E E E+ + P V DHP FTKG
Sbjct: 361 NLLEGNPFTRGDSAVQHHDTSGNQQRARGEMDRFLQKLEDVKNGKVLPFTLEVKDPLANSFIGPRRDDTRGNIRDDPLIQVEEYERSFQENEDLGLHDINTENYAVG-----------SSQVEVEVEQPV--VGPTEVA-DHPHHFTKG 495
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: A0A836CEY4_9STRA (ZPR1 zinc-finger domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEY4_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 5.050e-19 Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 1
Query: 10 NLLEGNPFFSGDSSTAHHGKESEAQKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIGSTDHENPADDP 222
NL EGNPF+SGDS+T HHG E Q KFR F+E AL G+ PFT+++ DPLGNSFIG+ +++PADDP
Sbjct: 364 NLCEGNPFYSGDSATHHHGSEGATQVKFRVFLEKLDALRDGQHFPFTLVLRDPLGNSFIGALGYDDPADDP 434
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: A0A7S4A1G6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1G6_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 3.260e-18 Identity = 68/162 (41.98%), Postives = 92/162 (56.79%), Query Frame = 1
Query: 13 LLEGNPFFSGDSSTAHHGKESEAQKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIG-----------STDHENPADDPNITVERFERSFQENEELGLNDMNTDGYESLPE-GYVRPLESLSTLAEGEGEES--AAHLIPH-RVGTDHPIP-FTKGQEEA 450
LL GNPF GDS+ E+E ++KF AF++ RAL G+V PFT+I+ DPL NSFIG S E P D PN+TVE ++R+F E+EELGLND+N +++ E G L ++ L G A H+ P R DHP P F +G ++A
Sbjct: 355 LLRGNPF--GDSA------ETENRRKFEAFLDRVRALRDGKVFPFTVIMQDPLANSFIGPRRDAASFSPISEAGEAPPD-PNLTVEDYDRTFDEDEELGLNDINDGTLDAVAEEGSDDDLPAVDGLEVGPKRVVGVADHVRPAPRTTVDHPNPEFARGCDDA 507
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: A0A7S2DCU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCU7_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.180e-17 Identity = 56/158 (35.44%), Postives = 81/158 (51.27%), Query Frame = 1
Query: 13 LLEGNPFFSGDSSTAHHGKESEAQKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIGSTDHENPADDPNITVERFERSFQENEELGLNDMNTDGYESLPEGYVRPLESLSTLAEGEGEESAAHLIPHRVGTDHPIPFTKGQEEADNTRADGSRVPP 486
+ PF++GDS GK+ + K+ AF + + G+ +PFT+ + DPL +SFIGS D P DP +TV + RS+ E+EE G+NDMN E G + S S +A+ + H+ R G DHP + KG + DG RV P
Sbjct: 86 MTHSQPFYAGDS-----GKDDTLRSKWTAFTDKLSEIADGQGMPFTLTLRDPLASSFIGSLDGLPPDQDPQVTVTDYTRSWDEDEEYGINDMNAS--EGGGGGAEITIPSDSGVAQANPNLAMTHV---RSGEDHPREYAKGCD-------DGVRVVP 226
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: A0A7S2S3B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S3B9_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 3.750e-15 Identity = 61/179 (34.08%), Postives = 84/179 (46.93%), Query Frame = 1
Query: 4 YANLLEGNPFFSGDSSTAHH----GKESE----AQKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIGSTDHE----NPADD------------PNITVERFERSFQENEELGLNDMNTDGY-ESLPEGYVRPLESLSTLAEGEGEESAAHLI--PHRVGTDHPIPFTKGQEEADNT 459
Y L NPF GD++T H G+E K + F++ + G+ P+TMI+ DPL NSFIG H + ADD P I +E +ERSF++NE LGLND+NT+ Y E+ E V + +G + H + R G DHP KG + D T
Sbjct: 34 YDRLKCVNPFPHGDAATKQHRTNDGEEFSDPCPRTKNYLQFLQTLDDMKNGKKFPYTMIISDPLSNSFIGPVPHHAVQISSADDDNHNCSLQNYVDPRIKMEPYERSFEQNEILGLNDINTENYREATKEHKVN--------CDFDGSDLPNHFVRLDTRRGPDHPHDVAKGTLDGDET 204
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: F2E5X6_HORVV (Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2E5X6_HORVV) HSP 1 Score: 81.6 bits (200), Expect = 5.340e-15 Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 1
Query: 10 NLLEGNPFFSGDSSTAHHGKESEAQKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIGSTDHENPADDPNITVERFERSFQENEELGLNDMNTDGY 303
+LL NPF GDSS + + KF+ F+++ AL +G+ FT+I+ DP+ NS+I S P DPN+T E +ER+F+ENE+LGLND+NT+ Y
Sbjct: 370 DLLRNNPFLKGDSS------QETDRTKFKKFLDDIEALTSGKE-NFTVIIDDPMANSYIQSLTAPEP--DPNMTTEDYERTFEENEDLGLNDINTENY 458 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig115491.1226.1 >prot_H-elongata_contig115491.1226.1 ID=prot_H-elongata_contig115491.1226.1|Name=mRNA_H-elongata_contig115491.1226.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp AYANLLEGNPFFSGDSSTAHHGKESEAQKKFRAFMENFRALVAGEVLPFTback to top mRNA from alignment at H-elongata_contig115491:303..1527+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig115491.1226.1 ID=mRNA_H-elongata_contig115491.1226.1|Name=mRNA_H-elongata_contig115491.1226.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1225bp|location=Sequence derived from alignment at H-elongata_contig115491:303..1527+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig115491:303..1527+ >mRNA_H-elongata_contig115491.1226.1 ID=mRNA_H-elongata_contig115491.1226.1|Name=mRNA_H-elongata_contig115491.1226.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig115491:303..1527+ (Himanthalia elongata Himel1 dioecious)back to top |