mRNA_H-elongata_contig50261.12255.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50261.12255.1
Unique NamemRNA_H-elongata_contig50261.12255.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: A0A6H5KA14_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.300e-12
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 QLKSEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFSTA 177
            Q+KSEVLRYR +  ++P  +PL WW    ATF  LR L+ R+LC+ ASSA+SERLFS A
Sbjct:  482 QMKSEVLRYRGVTSMNPDGNPLTWWDQHKATFPLLRELSHRILCVPASSAASERLFSKA 540          
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: UPI000DC13D07 (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC13D07)

HSP 1 Score: 63.2 bits (152), Expect = 3.600e-10
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   10 SEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFSTA 177
             E  RY   P+++  +DP  WWK+   TF FL VLA  +LCI ASSASSER+FSTA
Sbjct:  506 DEFSRYLAEPQINHNDDPCLWWKSRELTFPFLSVLAKNILCIPASSASSERVFSTA 561          
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: J9KU67_ACYPI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KU67_ACYPI)

HSP 1 Score: 61.6 bits (148), Expect = 1.190e-9
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   10 SEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFSTA 177
             E  RY   P+++  +DP  WWK+   TF FL V A  +LCI ASSASSER+FSTA
Sbjct:  221 DEFSRYLAEPQINHNDDPCLWWKSRELTFPFLSVFAKNILCIPASSASSERVFSTA 276          
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: UPI0007636C86 (zinc finger BED domain-containing protein 1-like n=1 Tax=Diuraphis noxia TaxID=143948 RepID=UPI0007636C86)

HSP 1 Score: 60.1 bits (144), Expect = 3.100e-9
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   10 SEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFSTA 177
             E  RY   P+++  +DP  WWK+   TF  L VLA  +LCI ASSASSER+FSTA
Sbjct:  194 DEFSRYLAEPQINHNDDPCLWWKSRELTFPSLSVLAKNILCIPASSASSERVFSTA 249          
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: A0A2H8TDZ4_9HEMI (Zinc finger BED domain-containing protein 1 n=2 Tax=Aphidini TaxID=33387 RepID=A0A2H8TDZ4_9HEMI)

HSP 1 Score: 60.5 bits (145), Expect = 3.220e-9
Identity = 25/59 (42.37%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 QLKSEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFSTA 177
            ++++E+  Y  +PK+D ++ P+ WW  +G  F FL+V+A +++CIQA+S +SER+FS A
Sbjct:  574 KVENEINGYLNLPKIDFEQSPVTWWHLSGTMFPFLKVMANKLMCIQATSVASERVFSRA 632          
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: A0A1A8AZ70_NOTFU (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A8AZ70_NOTFU)

HSP 1 Score: 56.2 bits (134), Expect = 1.930e-8
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   13 EVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFST 174
            E+  Y     LD +EDPLEWWK +   F  L VLA + LC+ A+SASSE++FST
Sbjct:   59 ELQAYLQAATLDTEEDPLEWWKQSPKLFPKLSVLAKKYLCVPATSASSEQVFST 112          
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: UPI0018E2124D (E3 SUMO-protein ligase ZBED1-like n=3 Tax=Acanthomorphata TaxID=123368 RepID=UPI0018E2124D)

HSP 1 Score: 57.4 bits (137), Expect = 3.910e-8
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    4 LKSEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFS 171
            +K+E+  Y + P +D ++DPL WW+     F +L  LA + LCI A+SA SERLFS
Sbjct:  413 IKAELDNYLITPSIDGEQDPLAWWRVHNVNFPWLSRLARKYLCIPATSAPSERLFS 468          
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: UPI00046BD743 (zinc finger BED domain-containing protein 1-like n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=UPI00046BD743)

HSP 1 Score: 57.4 bits (137), Expect = 3.910e-8
Identity = 24/59 (40.68%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 QLKSEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFSTA 177
            ++++E+  Y  +PK+D +  P+ WW   G  F FL+V+A +++C+QA+S +SER+FS A
Sbjct:  428 KVENEINGYFNLPKIDYELSPITWWHLNGTMFPFLKVMANKLMCMQATSVASERVFSRA 486          
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: UPI0018E24B7F (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Cyprinodon tularosa TaxID=77115 RepID=UPI0018E24B7F)

HSP 1 Score: 57.4 bits (137), Expect = 3.930e-8
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    4 LKSEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFS 171
            +K+E+  Y + P +D ++DPL WW+     F +L  LA + LCI A+SA SERLFS
Sbjct:  538 IKAELDNYLITPSIDGEQDPLAWWRVHNVNFPWLSRLARKYLCIPATSAPSERLFS 593          
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: J9KDH9_ACYPI (BED-type domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KDH9_ACYPI)

HSP 1 Score: 57.4 bits (137), Expect = 3.950e-8
Identity = 24/59 (40.68%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 QLKSEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFSTA 177
            ++++E+  Y  +PK+D +  P+ WW   G  F FL+V+A +++C+QA+S +SER+FS A
Sbjct:  428 KVENEINGYFNLPKIDYELSPITWWHLNGTMFPFLKVMANKLMCMQATSVASERVFSRA 486          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA14_9PHAE1.300e-1257.63Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
UPI000DC13D073.600e-1055.36zinc finger BED domain-containing protein 1-like n... [more]
J9KU67_ACYPI1.190e-953.57Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ac... [more]
UPI0007636C863.100e-953.57zinc finger BED domain-containing protein 1-like n... [more]
A0A2H8TDZ4_9HEMI3.220e-942.37Zinc finger BED domain-containing protein 1 n=2 Ta... [more]
A0A1A8AZ70_NOTFU1.930e-851.85Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
UPI0018E2124D3.910e-846.43E3 SUMO-protein ligase ZBED1-like n=3 Tax=Acanthom... [more]
UPI00046BD7433.910e-840.68zinc finger BED domain-containing protein 1-like n... [more]
UPI0018E24B7F3.930e-846.43E3 SUMO-protein ligase ZBED1-like n=1 Tax=Cyprinod... [more]
J9KDH9_ACYPI3.950e-840.68BED-type domain-containing protein n=1 Tax=Acyrtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50261contigH-elongata_contig50261:452..628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog7029.ACYPI29347-PA
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.452059-CDS-H-elongata_contig50261:451..6281622930826.452059-CDS-H-elongata_contig50261:451..628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50261 452..628 -
1691679587.132803-CDS-H-elongata_contig50261:451..6281691679587.132803-CDS-H-elongata_contig50261:451..628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50261 452..628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50261.12255.1prot_H-elongata_contig50261.12255.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50261 452..628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50261.12255.1

>prot_H-elongata_contig50261.12255.1 ID=prot_H-elongata_contig50261.12255.1|Name=mRNA_H-elongata_contig50261.12255.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
QLKSEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSA
SSERLFSTA
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mRNA from alignment at H-elongata_contig50261:452..628-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50261.12255.1 ID=mRNA_H-elongata_contig50261.12255.1|Name=mRNA_H-elongata_contig50261.12255.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig50261:452..628- (Himanthalia elongata Himel1 dioecious)
CAGCTCAAGTCGGAGGTGCTCAGGTACCGTGTTATACCCAAGCTTGACCC GAAGGAAGACCCGCTTGAGTGGTGGAAGACAACAGGCGCGACCTTCATTT TTCTTCGTGTGCTGGCTATACGTGTCCTCTGTATCCAGGCTTCGTCTGCG TCGTCGGAGCGCCTGTTCTCTACGGCA
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Coding sequence (CDS) from alignment at H-elongata_contig50261:452..628-

>mRNA_H-elongata_contig50261.12255.1 ID=mRNA_H-elongata_contig50261.12255.1|Name=mRNA_H-elongata_contig50261.12255.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig50261:452..628- (Himanthalia elongata Himel1 dioecious)
CAGCTCAAGTCGGAGGTGCTCAGGTACCGTGTTATACCCAAGCTTGACCC
GAAGGAAGACCCGCTTGAGTGGTGGAAGACAACAGGCGCGACCTTCATTT
TTCTTCGTGTGCTGGCTATACGTGTCCTCTGTATCCAGGCTTCGTCTGCG
TCGTCGGAGCGCCTGTTCTCTACGGCACAGCTCAAGTCGGAGGTGCTCAG
GTACCGTGTTATACCCAAGCTTGACCCGAAGGAAGACCCGCTTGAGTGGT
GGAAGACAACAGGCGCGACCTTCATTTTTCTTCGTGTGCTGGCTATACGT
GTCCTCTGTATCCAGGCTTCGTCTGCGTCGTCGGAGCGCCTGTTCTCTAC
GGCA
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