mRNA_H-elongata_contig5023.12250.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5023.12250.1
Unique NamemRNA_H-elongata_contig5023.12250.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5023.12250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5023contigH-elongata_contig5023:5784..6623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size441
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5023.12250.1prot_H-elongata_contig5023.12250.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5023 5790..6623 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930825.942905-UTR-H-elongata_contig5023:5783..57891622930825.942905-UTR-H-elongata_contig5023:5783..5789Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5023 5784..5789 -
1691679586.9187763-UTR-H-elongata_contig5023:5783..57891691679586.9187763-UTR-H-elongata_contig5023:5783..5789Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5023 5784..5789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930825.961514-CDS-H-elongata_contig5023:5789..59101622930825.961514-CDS-H-elongata_contig5023:5789..5910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5023 5790..5910 -
1691679586.9299598-CDS-H-elongata_contig5023:5789..59101691679586.9299598-CDS-H-elongata_contig5023:5789..5910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5023 5790..5910 -
1622930825.9769118-CDS-H-elongata_contig5023:6309..66231622930825.9769118-CDS-H-elongata_contig5023:6309..6623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5023 6310..6623 -
1691679586.937512-CDS-H-elongata_contig5023:6309..66231691679586.937512-CDS-H-elongata_contig5023:6309..6623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5023 6310..6623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5023.12250.1

>prot_H-elongata_contig5023.12250.1 ID=prot_H-elongata_contig5023.12250.1|Name=mRNA_H-elongata_contig5023.12250.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
MDGSRWTAEHVAVECVINNCPVIEDAPGASTTPVGSTPRKDRSTVVFTTN
EVKTNEAAAQTGYEEAVLLTRETLEKSKGVDPPPATATFVPNAAAGAAAG
ITGTRRYSTGSLTTPQTGTRGPRSTVGSRRRKSASGAMEDGVWI*
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mRNA from alignment at H-elongata_contig5023:5784..6623-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5023.12250.1 ID=mRNA_H-elongata_contig5023.12250.1|Name=mRNA_H-elongata_contig5023.12250.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=840bp|location=Sequence derived from alignment at H-elongata_contig5023:5784..6623- (Himanthalia elongata Himel1 dioecious)
ATGGACGGCTCGCGTTGGACAGCGGAACACGTTGCTGTAGAGTGCGTCAT
CAATAACTGCCCTGTAATCGAGGACGCGCCTGGCGCGTCGACCACACCAG
TGGGCTCAACACCGCGAAAAGACAGGTCAACCGTGGTGTTTACGACGAAC
GAGGTCAAGACAAACGAGGCGGCGGCACAAACTGGTTACGAGGAGGCGGT
GCTGCTAACTAGGGAAACCTTGGAAAAGAGCAAGGGCGTGGATCCGCCGC
CCGCTACGGCGACCTTCGTCCCGAATGCTGCTGCTGGGGCTGCTGCCGGC
ATTACCGGCACCAGGCAAGCTTGTTGTCCAAATTAACGCAACGCCTCGTT
CCCCCCTTCGTTTTGTCCTCGGCCGTCTTGTTGCCTTTTTCTGTTTATAC
GAATAACTGCCTGCGGGGGTTCGAGTGAGGGTTTGGGTTAGTTTTAGTAC
GTTGAAGTACACATATCTGTTAAGGTGTATTTCCGTATTGTCTCGTTTTG
CGTATCGCATGGTTTCATAGTCACGTATAGTTTTCATGTCATCCACAGTA
TAAGTAAGTACACCCTGTGTGTTTTATTTTAGTGTAAACGTATATATGTA
CAAGAAGTCGTATGTATTGATGGATGCATGCAACGTGGTTATGTTGCTAT
TTGTACTATCGCTACTACTTTTACTTACAGTATAGTACTTGGCTGGCAAT
GTTGTTTGTGCAGGCGCTATTCTACAGGGTCACTGACGACCCCGCAGACG
GGCACAAGAGGCCCCAGGTCTACGGTGGGTTCCCGCCGCAGGAAGTCCGC
ATCAGGGGCGATGGAAGATGGAGTATGGATATGATACCCC
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Coding sequence (CDS) from alignment at H-elongata_contig5023:5784..6623-

>mRNA_H-elongata_contig5023.12250.1 ID=mRNA_H-elongata_contig5023.12250.1|Name=mRNA_H-elongata_contig5023.12250.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig5023:5784..6623- (Himanthalia elongata Himel1 dioecious)
ATGGACGGCTCGCGTTGGACAGCGGAACACGTTGCTGTAGAGTGCGTCAT
CAATAACTGCCCTGTAATCGAGGACGCGCCTGGCGCGTCGACCACACCAG
TGGGCTCAACACCGCGAAAAGACAGGTCAACCGTGGTGTTTACGACGAAC
GAGGTCAAGACAAACGAGGCGGCGGCACAAACTGGTTACGAGGAGGCGGT
GCTGCTAACTAGGGAAACCTTGGAAAAGAGCAAGGGCGTGGATCCGCCGC
CCGCTACGGCGACCTTCGTCCCGAATGCTGCTGCTGGGGCTGCTGCCGGC
ATTACCGGCACCAGATGGACGGCTCGCGTTGGACAGCGGAACACGTTGCT
GTAGAGTGCGTCATCAATAACTGCCCTGTAATCGAGGACGCGCCTGGCGC
GTCGACCACACCAGTGGGCTCAACACCGCGAAAAGACAGGTCAACCGTGG
TGTTTACGACGAACGAGGTCAAGACAAACGAGGCGGCGGCACAAACTGGT
TACGAGGAGGCGGTGCTGCTAACTAGGGAAACCTTGGAAAAGAGCAAGGG
CGTGGATCCGCCGCCCGCTACGGCGACCTTCGTCCCGAATGCTGCTGCTG
GGGCTGCTGCCGGCATTACCGGCACCAGGCGCTATTCTACAGGGTCACTG
ACGACCCCGCAGACGGGCACAAGAGGCCCCAGGTCTACGGTGGGTTCCCG
CCGCAGGAAGTCCGCATCAGGGGCGATGGAAGATGGAGTATGGATATGAG
CGCTATTCTACAGGGTCACTGACGACCCCGCAGACGGGCACAAGAGGCCC
CAGGTCTACGGTGGGTTCCCGCCGCAGGAAGTCCGCATCAGGGGCGATGG
AAGATGGAGTATGGATATGA
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