mRNA_H-elongata_contig50148.12243.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50148.12243.1
Unique NamemRNA_H-elongata_contig50148.12243.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50148.12243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50148contigH-elongata_contig50148:576..3047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size773
Cds size771
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930825.1502116-CDS-H-elongata_contig50148:575..12711622930825.1502116-CDS-H-elongata_contig50148:575..1271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50148 576..1271 -
1691679586.5535638-CDS-H-elongata_contig50148:575..12711691679586.5535638-CDS-H-elongata_contig50148:575..1271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50148 576..1271 -
1622930825.1779873-CDS-H-elongata_contig50148:2972..30471622930825.1779873-CDS-H-elongata_contig50148:2972..3047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50148 2973..3047 -
1691679586.5699186-CDS-H-elongata_contig50148:2972..30471691679586.5699186-CDS-H-elongata_contig50148:2972..3047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50148 2973..3047 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50148.12243.1prot_H-elongata_contig50148.12243.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50148 576..3047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50148.12243.1

>prot_H-elongata_contig50148.12243.1 ID=prot_H-elongata_contig50148.12243.1|Name=mRNA_H-elongata_contig50148.12243.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=257bp
MARGVPAPHRINNLADRVSAMLGLELPPLNVPAVARTLANGMGMPAEVLT
AVEALARFSVGNPSAPNPATALTIVPLERRRVVMGKKKALTSSESASGVD
GISSDGRGGSLGNGSENENEDERGYARQRGDTERGVYEGSGPENNDGDRS
SSSGESSDSSSACDEANDVNRARKKLRRFLSDASPLHVMALVVAAAKSCP
GWDSWKYARPALLPTPDRNVPPTGVPVTEAGFGARTGGGEVEGASQVEKR
GASSSQG
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mRNA from alignment at H-elongata_contig50148:576..3047-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50148.12243.1 ID=mRNA_H-elongata_contig50148.12243.1|Name=mRNA_H-elongata_contig50148.12243.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2472bp|location=Sequence derived from alignment at H-elongata_contig50148:576..3047- (Himanthalia elongata Himel1 dioecious)
ATGGCGAGAGGCGTTCCGGCGCCACACCGCATCAATAACCTCGCGGATCG
TGTCTCCGCCATGCTCGGCCTTGAGGTGATGACGATTAGGGTAATAATTG
TGACGATTATGGTAATAATTATGACGACGATGGTAATAATTATGACGAGG
GTGGTAATAATAAAGAATATTATGGTAATAATGAATATTATGGTAATAAT
GAATATTATGGTAATACTGATGATTTTGGTAATAATTATGATGATGATTA
TTGTAATACGGATAATGACGATTATTGTAATAATGATAATGACCATGATT
GTAATAATGGTAATAACGATGATGGTGTAAATTTTTGATGATGACCTTGA
CTACTGGCTTGATGTTCATTTAACTTTGTTTTAGCTTCGTTTGACTGTTC
GTTTAGCATCCTCTGGTCCTAAATGACGTCAGCAGCGGGTCTCTAATAAA
GCTAATATCGACCACTCCTTAGCGCAAGATGACAAAAACATCTCCATAGA
GAAAGGGATAAACAAAATACGCACACATACATATAATTATATATGCCAGT
GCCGGATTGCGCCGTTATGTGCAATTTAATAACGATACAGGCTCAAGTAA
GAATTGTACAAGTAGAGAGAGTATGTCCCCTCTGTCCCGTCTGATCAGAG
GTTTTCGTAGTAAGGATGGCAGGGGTTATGTGCAATTTAACATACATACA
CACGAACTCACAAATTATAAGAAAAACGCGCGGGTATTCGTTTCCACTTT
TTCGAAAAATATTTTGAATCAAGAGTAGAGAGTTATTGGGCTGTCTGTGT
GTGTGTCTGCTTAGAGTTAGGCTAACATATAATCAAGGGATAATGAGAGC
TGAAATGTCTCGAGGCGTCGGCGACTGCTGAAAAATGTCAATTTCTCCCT
CTCAATAGTCGTTCAATAGTCATTTCGATTCGCCCGAAAAAAAGGGTTTG
AATTGTTGAGCCTCAACGCTTTAGCTCTCTCTCTCTCGCACAAGCGTATA
TCAAAACCTAGCTTTCTCTCTGTATCAAAGAATATTATTATGAAAAAACA
TTTGAACTCATTCCAACCCTCCGAACATCCACGCCTTCTTAGCACCATGG
GAGGTACCATCCAGGGGACCAACTATCGTCAAGTTCGAATGTGGAGATTT
TATCTACATTTAAGCACAAAATCGTCATATGTTATTATACTATACTATAC
TATACTATACTGTACTATGGATTAGCGCACGGGCATGTGTCGAAATGTGG
TCAGAGGAATCATTTTTTGAACAAAGTGGTGGCAAAAGGCCACGAATTAT
GTATTATTTCATTGGCAACGACAATGGCAATTCTGTTCAGTACTATTCTA
CAATATACTGTTCTCTGTACTATACTACAATATACTGTTCAGTACTATAC
TACAATATACTGTTCTCTGTACAAGTAACGAATGTCGGAACGCACGTATC
GTTAGGAAAAATAAATAATTATATGCTGGTATTATTTATTTATTTTACGT
GAGAACTGGGGAAAAAGTAGTATTTCAGTATTGGGTGTGGGGTCGAGGGG
TTAGGGGGCGGTTAAGAGCGATACTACTTGTAAGTAATTTTTCCGTCCTG
CACAAATGCGCTTGCAGGGGCGTCCTGCATTTAGCCGTTCCCTAGGGGGA
GGGTTTCTCTCTTCTAATGGCTCTTCCAGCGAATATAATCGAATATCGTG
AGAACAGGAAACATCGAACAATACCCCCCCCGTCCCCCCGTCCCACCCTC
TGCGATGTCTCTCTCTCTCTCCACAGCTACCGCCGCTAAACGTTCCCGCG
GTAGCGCGTACACTCGCGAACGGGATGGGCATGCCTGCGGAGGTCTTGAC
AGCGGTGGAAGCCCTCGCGCGTTTCTCCGTCGGGAATCCGTCTGCGCCGA
ACCCCGCCACGGCCCTCACGATCGTCCCGCTCGAGAGGAGACGCGTGGTC
ATGGGCAAGAAGAAGGCACTGACGTCATCGGAGTCAGCGAGCGGCGTAGA
TGGCATTAGCAGCGATGGCAGAGGCGGAAGCCTAGGTAATGGCTCCGAGA
ACGAGAACGAGGACGAGAGGGGTTACGCTCGGCAGCGAGGGGATACAGAA
AGAGGCGTTTATGAAGGTAGCGGTCCTGAAAACAACGATGGTGACAGGAG
CAGCAGTAGCGGCGAAAGCAGTGATAGCAGCAGCGCGTGCGACGAAGCGA
ATGACGTCAACCGCGCCCGGAAGAAACTGCGGCGGTTTCTGTCGGACGCT
AGCCCGCTGCACGTGATGGCCCTCGTGGTCGCCGCCGCGAAGAGCTGCCC
CGGATGGGACTCATGGAAGTACGCAAGGCCGGCCCTGCTTCCAACCCCTG
ACCGGAACGTACCACCGACAGGAGTTCCAGTGACAGAGGCGGGTTTTGGG
GCGAGGACGGGAGGAGGGGAAGTGGAGGGGGCGTCGCAAGTCGAGAAGCG
CGGAGCCTCCTCGAGCCAGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig50148:576..3047-

>mRNA_H-elongata_contig50148.12243.1 ID=mRNA_H-elongata_contig50148.12243.1|Name=mRNA_H-elongata_contig50148.12243.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1542bp|location=Sequence derived from alignment at H-elongata_contig50148:576..3047- (Himanthalia elongata Himel1 dioecious)
ATGGCGAGAGGCGTTCCGGCGCCACACCGCATCAATAACCTCGCGGATCG
TGTCTCCGCCATGCTCGGCCTTGAGATGGCGAGAGGCGTTCCGGCGCCAC
ACCGCATCAATAACCTCGCGGATCGTGTCTCCGCCATGCTCGGCCTTGAG
CTACCGCCGCTAAACGTTCCCGCGGTAGCGCGTACACTCGCGAACGGGAT
GGGCATGCCTGCGGAGGTCTTGACAGCGGTGGAAGCCCTCGCGCGTTTCT
CCGTCGGGAATCCGTCTGCGCCGAACCCCGCCACGGCCCTCACGATCGTC
CCGCTCGAGAGGAGACGCGTGGTCATGGGCAAGAAGAAGGCACTGACGTC
ATCGGAGTCAGCGAGCGGCGTAGATGGCATTAGCAGCGATGGCAGAGGCG
GAAGCCTAGGTAATGGCTCCGAGAACGAGAACGAGGACGAGAGGGGTTAC
GCTCGGCAGCGAGGGGATACAGAAAGAGGCGTTTATGAAGGTAGCGGTCC
TGAAAACAACGATGGTGACAGGAGCAGCAGTAGCGGCGAAAGCAGTGATA
GCAGCAGCGCGTGCGACGAAGCGAATGACGTCAACCGCGCCCGGAAGAAA
CTGCGGCGGTTTCTGTCGGACGCTAGCCCGCTGCACGTGATGGCCCTCGT
GGTCGCCGCCGCGAAGAGCTGCCCCGGATGGGACTCATGGAAGTACGCAA
GGCCGGCCCTGCTTCCAACCCCTGACCGGAACGTACCACCGACAGGAGTT
CCAGTGACAGAGGCGGGTTTTGGGGCGAGGACGGGAGGAGGGGAAGTGGA
GGGGGCGTCGCAAGTCGAGAAGCGCGGAGCCTCCTCGAGCCAGGGTCTAC
CGCCGCTAAACGTTCCCGCGGTAGCGCGTACACTCGCGAACGGGATGGGC
ATGCCTGCGGAGGTCTTGACAGCGGTGGAAGCCCTCGCGCGTTTCTCCGT
CGGGAATCCGTCTGCGCCGAACCCCGCCACGGCCCTCACGATCGTCCCGC
TCGAGAGGAGACGCGTGGTCATGGGCAAGAAGAAGGCACTGACGTCATCG
GAGTCAGCGAGCGGCGTAGATGGCATTAGCAGCGATGGCAGAGGCGGAAG
CCTAGGTAATGGCTCCGAGAACGAGAACGAGGACGAGAGGGGTTACGCTC
GGCAGCGAGGGGATACAGAAAGAGGCGTTTATGAAGGTAGCGGTCCTGAA
AACAACGATGGTGACAGGAGCAGCAGTAGCGGCGAAAGCAGTGATAGCAG
CAGCGCGTGCGACGAAGCGAATGACGTCAACCGCGCCCGGAAGAAACTGC
GGCGGTTTCTGTCGGACGCTAGCCCGCTGCACGTGATGGCCCTCGTGGTC
GCCGCCGCGAAGAGCTGCCCCGGATGGGACTCATGGAAGTACGCAAGGCC
GGCCCTGCTTCCAACCCCTGACCGGAACGTACCACCGACAGGAGTTCCAG
TGACAGAGGCGGGTTTTGGGGCGAGGACGGGAGGAGGGGAAGTGGAGGGG
GCGTCGCAAGTCGAGAAGCGCGGAGCCTCCTCGAGCCAGGGT
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