mRNA_H-elongata_contig5007.12231.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5007.12231.1 vs. uniprot
Match: D7FXJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXJ2_ECTSI) HSP 1 Score: 408 bits (1049), Expect = 1.420e-132 Identity = 215/403 (53.35%), Postives = 267/403 (66.25%), Query Frame = 1
Query: 1 IAGAWRRPLFVGGWTHSDDSS-------------QEGELTFNLQTPTLFLDLRVPKASAALLGHHQGFDTMSDLELRLFARRHAFAGYTRVQAFSRPPADGES--GGDGTEK--------RGLVATRHHAIDWNYVGQPRTRPNKWRVEMEPGGDTWKEWGFAQDDFDQHVYMERWQRLPGGGGPYFALRRRPSASSPSAPDSLIIVCGDHFGLILDRSLEVVKGRGGADRGGR--LVDLVDDTVARGGRREAVELMSLEASHGRIRGYRDVPPWTIDCSLHPWLKGRRPFLGTVITILTDEGNGT-LEISAASSTEKPTARKMKLQNTVERAEQGVGHQEDAFWWIGTPLNGVWDVVESTLVAGSPD-----------SLRKLLESSGAKFVVKESDSGREE 1098
IAGAW+RPLFVGGWTHSDD++ QEGE TFNLQTP++F+D+RVPKA+AALLGHH+ F TM+D ELRLFARRHAFAGYTRV+ + P DG S G G E+ G VATRHH IDWNYVG+ R RPNKWRVEM PGGD WKEWGFA+D FDQHVYMERW+RLPGG GPYFALRRRPS SAPD+L++VCGDHFGLI+DR +++ GG+ RGG+ LV VDD +ARG RR A+EL+SLEASHGR+ + PWT++CSLHPWL+ RRPFLG+V+TI D + + + +A ++ R + W G L+G WDVVEST+ P + R L SGA+ ++ ++ R++
Sbjct: 95 IAGAWKRPLFVGGWTHSDDAAEPASRSSSSPPIGQEGETTFNLQTPSVFIDIRVPKAAAALLGHHRSFHTMTDFELRLFARRHAFAGYTRVEPVASPWVDGASLRRGGGEEQGAKEHGRLEGSVATRHHCIDWNYVGEARPRPNKWRVEMGPGGDVWKEWGFAKDAFDQHVYMERWERLPGGRGPYFALRRRPS----SAPDALLVVCGDHFGLIVDRDSGLMEA-GGSSRGGKGGLVGRVDDAIARGDRRRALELLSLEASHGRVSAQKGRLPWTVNCSLHPWLENRRPFLGSVLTIAPDSLSADWVGVKSAGGSDDGVPRHLG--------------------WNGARLDGTWDVVESTMSLPPPSRSPSSRGLPHVAFRALFAESGAEVLMGGGETPRKD 472
BLAST of mRNA_H-elongata_contig5007.12231.1 vs. uniprot
Match: A0A835YWZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ2_9STRA) HSP 1 Score: 246 bits (628), Expect = 5.480e-72 Identity = 133/265 (50.19%), Postives = 161/265 (60.75%), Query Frame = 1
Query: 1 IAGAWRRPLFVGGWTHSDDSSQEGELTFNLQTPTLFLDLRVPKASAALLGHHQGFDTMSDLELRLFARRHAFAGYTRVQAFSRPPADGESGGDGTEKRGLVATRHHAIDWNYVGQPRTRPNKWRVE---MEPGGDTWKEWGFAQDDFDQHVYMERWQRLPGGGGPYFALRRRPSASSPSAPDSLIIVCGDHFGLILDRSLEVVKGRGGADRGGRLVDLVDDTVARGGRREAVELMSLEASHGRIRGYRDVPPWTIDCSLHPWLKG 786
+AG W RPLFVGGW HSD S E +NLQTP++FLD+RVP +G +S +LRL+ARRHAFAG TRVQ+ P VATRHHA+DWN+VG+ R RPNKWR+E P D WKEWGFA+D+ QH+YMERW+R+ GG GPY ALRRRP AS D+ +IVCGDHFG + DR+ RG R LV++VD V RG R A + L+A HG R + W ID SL PWL G
Sbjct: 59 VAGVWSRPLFVGGWEHSDASQ---ETVYNLQTPSVFLDMRVP--CGVEFPGARGLRDLSLEQLRLYARRHAFAGITRVQSIDGAP---------------VATRHHAVDWNFVGRMRPRPNKWRIEARQQRPRCDVWKEWGFARDEHGQHIYMERWERVKGGTGPYLALRRRPEASG-GGRDAFLIVCGDHFGYVEDRA---AAARGDWGRYASLVEVVDAAVKRGDRGAAEAYLDLKACHGMRR---EGGAWVIDYSLQPWLVG 296
BLAST of mRNA_H-elongata_contig5007.12231.1 vs. uniprot
Match: L1JSR4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JSR4_GUITC) HSP 1 Score: 244 bits (623), Expect = 4.340e-71 Identity = 124/265 (46.79%), Postives = 163/265 (61.51%), Query Frame = 1
Query: 1 IAGAWRRPLFVGGWTHSDDSSQEGELTFNLQTPTLFLDLRVPKASAALLGHH-QGFDTMSDLELRLFARRHAFAGYTRVQAFSRPPADGESGGDGTEKRGLVATRHHAIDWNYVGQPRTRPNKWRVEMEPGGDTWKEWGFAQDDFDQHVYMERWQRLPGGGGPYFALRRRPSASSPSAPDSLIIVCGDHFGLILDRSLEVVKGRGGADRGGRLVDLVDDTVARGGRREAVELMSLEASHGRIRGYRDVPPWTIDCSLHPWLKGRR 792
+ GAW RPLF+GGW HSD + E +NLQTP+LF+DLR+P GF +SD++LRL ARRH FAGY+ + GG T + V TRHHAIDWN+VG+ R RPNKWR+EM G WKEWG+A+D+FDQH+Y+ERW+ LP G GPY AL R ++++IVCGDHF +DR ++ + L DLVD V +G R EA++ +SLE HGRI G + W ID +LHPW+ G++
Sbjct: 66 VVGAWFRPLFLGGWIHSDSRT---ESVYNLQTPSLFIDLRIPNLEENKKWQDIHGFSQLSDVDLRLLARRHCFAGYSLLN----------QGGPWTIENPPVCTRHHAIDWNFVGKMRPRPNKWRIEMREDGKVWKEWGYARDEFDQHIYLERWELLPEGKGPYLALTR----DERYGREAILIVCGDHFNFAMDRPTKMPFDPQ-RQQVASLQDLVDSLVDKGDREEAIKYLSLEGCHGRISGKQ---AWVIDNALHPWMIGKK 309
BLAST of mRNA_H-elongata_contig5007.12231.1 vs. uniprot
Match: A0A7S0E054_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E054_9CRYP) HSP 1 Score: 236 bits (601), Expect = 7.390e-68 Identity = 120/265 (45.28%), Postives = 159/265 (60.00%), Query Frame = 1
Query: 1 IAGAWRRPLFVGGWTHSDDSSQEGELTFNLQTPTLFLDLRVPKASAALLGHH-QGFDTMSDLELRLFARRHAFAGYTRVQAFSRPPADGESGGDGTEKRGLVATRHHAIDWNYVGQPRTRPNKWRVEMEPGGDTWKEWGFAQDDFDQHVYMERWQRLPGGGGPYFALRRRPSASSPSAPDSLIIVCGDHFGLILDRSLEVVKGRGGADRGGRLVDLVDDTVARGGRREAVELMSLEASHGRIRGYRDVPPWTIDCSLHPWLKGRR 792
+ GAW RPLF+GGW HSD ++ E +NLQTP+LF+DLR+P QG +SD +LRL ARRH FAGY+ + G T + V TRHH+IDWN+VG+ R RPNKWR+EM G WKEWG+A+D+FDQH+Y+ERW+ LP G G Y A+RR D+++IVCG+HF ++DR ++ L DLVD V G R EA++ +SLE HGR+ G W +D +LHPW G+R
Sbjct: 69 VVGAWFRPLFLGGWIHSDATT---ESVYNLQTPSLFIDLRIPNLQVNERWKSVQGMSELSDDDLRLLARRHCFAGYSLLNE-----------GPWTSQNPPVCTRHHSIDWNFVGKMRPRPNKWRIEMREDGKVWKEWGYAKDEFDQHIYLERWELLPEGKGRYLAIRR----DERYGRDAILIVCGNHFNFVMDRPTKMPFDPERQSHAS-LQDLVDKLVQEGNREEAMKYLSLEGCHGRVSG---ANAWVVDNALHPWKIGKR 311
BLAST of mRNA_H-elongata_contig5007.12231.1 vs. uniprot
Match: A0A7S2US64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2US64_9STRA) HSP 1 Score: 218 bits (555), Expect = 4.830e-62 Identity = 123/288 (42.71%), Postives = 165/288 (57.29%), Query Frame = 1
Query: 1 IAGAWRRPLFVGGWTHSDDSSQEGELTFNLQTPTLFLDLRVPKASAALLGHHQGFDTMSDLELRLFARRHAFAGYTRVQAFSRPPADGESGGDGTEKRGLVATRHHAIDWNYVGQPRTRPNKWRVEMEPGG-DTWKEWGFAQDDFDQHVYMERWQRLPG---GGGPYFALRRRPSASSPSAPDSLIIVCGDHFGLILDRSLEVVKGRGGADRGGRLVDLVDDTVARGGRREAVELMSLEASHGRIRGYRDVPPWTIDCSLHPWLKGRRPFLGTVITILTDEGNGTLEI 852
+ GAW R +F GG+ +S S E TFN+QT TLF+D+R+P L + + F + D+ LRL+AR+HAF GYT + D E G+G V TRHH IDWN+VG PR RPNKW VE +P D+WKEW +A DDF QH Y E+W RL G G G ALR+ A+ A D +++V GDHF + R+L ++ R A G LV L+D V+ G R+ A +S+EASHGR+ W +D S+ PW +G + F G I + D NG L +
Sbjct: 7 VCGAWTRSIFFGGFEYS---SAHDEQTFNVQTNTLFVDIRIPTLRQKKLANLRSFAALDDIGLRLYARQHAFGGYTVM--------DYEGPGNGRP----VCTRHHCIDWNFVGVPRPRPNKWWVEFKPSTRDSWKEWAYATDDFGQHYYCEQWDRLDGDSSGSGVVVALRK---AAGAGACDGILVVVGDHFNFLSGRALLGIENRYNA---GSLVQLIDAAVSVGDRKTAESFLSIEASHGRVSS-----GWMVDASVQPWREGTKLFSGAAIEVDVDP-NGALSV 267
BLAST of mRNA_H-elongata_contig5007.12231.1 vs. uniprot
Match: A0A7S0F6Z1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F6Z1_9STRA) HSP 1 Score: 215 bits (548), Expect = 9.760e-60 Identity = 134/342 (39.18%), Postives = 176/342 (51.46%), Query Frame = 1
Query: 1 IAGAWRRPLFVGGWTHSDDSSQEGELTFNLQTPTLFLDLRVPKASAALLGHHQGFDTMSDL---ELRLFARRHAFAGYTRVQAFSRPPADGESGGDGTEKRGLVATRHHAIDWNYVGQPRTRPNKWRVEMEPGGDTWKEWGFAQDDFDQHVYMERWQRLPGGGG-PYFALRRRPSASSPSAPDSLIIVCGDHFGLILDRSLEVVK-GRGGA--DRGGRLVDLVDDTVARGGRREAVELMSLEASHGRIRGYRDVPPWTIDCSLHPWLKGRRPFLGTVITILTDEGNGTLEISAASSTEKPTARKMKLQNTVERAEQGVGHQEDAFWWIGTPLNGVWDVVEST 1005
+AG W RPLF GGW HS + + +N+QT LF+DLR+P+A ALL ++ DL +LR+ +R+H FAGYT++Q TEK LV TRHH IDWNYVG R RPNKW VEM G WKE +A DD QH YMERWQR G P ALR+R + D ++++CGDHF + DR V + GR A LVD+VD + RG A +S+ HGRI W IDC+ HPWL+GR + + + ++ +G + PT M L + AE G G W G VW+V +S+
Sbjct: 81 LAGCWDRPLFAGGWEHSTNCDEH---VYNVQTSNLFIDLRIPRARKALLKMDPEVASLRDLSTQQLRILSRQHVFAGYTKMQ---------------TEKGRLVCTRHHCIDWNYVGVARNRPNKWWVEMRSDGHVWKEMSYATDDHRQHYYMERWQRRQEGSAVPRLALRKRRG----NGRDGVVVICGDHFNYVFDRHWPVDEDGRQQAAGSHCATLVDMVDYLLERGKVDVARSYLSVNGGHGRIS-----QGWMIDCATHPWLEGRALWKKSSVAVVAGDGR-----------QPPTPTHM-LNGSGAEAE-GTGSSTFHLTWDGD----VWEVHDSS 378
BLAST of mRNA_H-elongata_contig5007.12231.1 vs. uniprot
Match: A0A7S4PHR7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PHR7_9EUKA) HSP 1 Score: 204 bits (518), Expect = 6.150e-56 Identity = 109/294 (37.07%), Postives = 156/294 (53.06%), Query Frame = 1
Query: 1 IAGAWRRPLFVGGWTHSDDSSQEGELTFNLQTPTLFLDLRVPKASAALLGHHQGFDTMSDLELRLFARRHAFAGYTRVQAFSRPPADGESGGDGTEKRGLVATRHHAIDWNYVGQPRTRPNKWRVEMEPGGDTWKEWGFAQDDFDQHVYMERWQRLPGGGGPYFALRRRPSASSPSAPDSLIIVCGDHFGLILDRSLEVVKGRGGADRGGRLVDLVDDTVARGGRREAVELMSLEASHGRIRG----------YRDVP-PWTIDCSLHPWLKGRRPFLGTVITILTD---EGNG 840
+ G+W R +F GGWT+SD S GE FN+ T TLF+D+R+PK S + HH+ FDT S ELRLF RRHAF G+ + + P GE V TRHH IDWN+VG+ R RPN+WR+E+ WKEW +D FDQH+YME W ++ G A+ R + ++++V G++F + DR +++ A G L++L+D + R + +SL A HG+I +P PW I SLHPW + ++ F I ++ EG G
Sbjct: 80 VTGSWNRHIFAGGWTYSDHLS--GEDVFNVVTNTLFIDIRIPKFSTKMFSHHKNFDTFSLEELRLFGRRHAFGGFGAID-MNNPKGPGEG----------VCTRHHWIDWNFVGKMRPRPNQWRIELNDDRSKWKEWSIVRDSFDQHLYMEMWVKMHNSNGRKIAMFREVDEKNGKKRPAILVVSGNYFNYLEDRDVDLES----AGDSGSLIELIDKAATQKDRTTLLSYLSLTAHHGQIDPTPSPSPSSFPLSSLPLPWMIHRSLHPWKERKQLFQKGEIQVINGGVREGEG 356
BLAST of mRNA_H-elongata_contig5007.12231.1 vs. uniprot
Match: A0A7S2X7A1_9EUKA (Hypothetical protein n=2 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X7A1_9EUKA) HSP 1 Score: 200 bits (509), Expect = 1.780e-54 Identity = 118/290 (40.69%), Postives = 158/290 (54.48%), Query Frame = 1
Query: 1 IAGAWRRPLFVGGWTHSDDSSQEGELTFNLQTPTLFLDLRVPKASAALLGHHQGFDTMSDLELRLFARRHAFAGYTRVQAFSRPPADGESGGDGTEKRGLVATRHHAIDWNYVGQ-PRTRPNKWRVEMEPGGDTWKEWGFAQDDFDQHVYMERWQRLPGGGGPYFALRRRPSASSPSAPDSLIIVCGDHFGLILDRSLEVVKGRGGADRGGRLVDLVDDTVARGGRREAVELMSLEASHGRIRGYRDVPPWTIDCSLHPWLKGRRPFLGTVITILTDEGNGTLEISAASS 867
I GAWRRPLF GGW +S++ + FNLQTP+LF+D+R P QGF +S ELR AR+H FAGY+ V GG G+ V TRHHA+DWNY PR RPN+WR+E+ P G+++KE+ A D+ Q VYMERWQ P G GPY ALRR ++ +SL+IV G+HF DR + GA +GG LVD G R + +++ LE S+G + + P W I S PW +G+R +LT + G+ E + S
Sbjct: 72 IVGAWRRPLFSGGWK---ESTEADTVVFNLQTPSLFIDIRFPLKRPDY-SKRQGFYQLSMAELRSLARQHCFAGYSLVNP---------KGGTGSAP---VCTRHHALDWNYHPSFPRARPNRWRIELSPNGESFKEFSVALDEHKQAVYMERWQMYPQGKGPYLALRRMKPQNAVDHRESLLIVVGNHFAFARDRK-HPLPLFSGASKGG-CASLVDAAFRAGDREKMEQMLDLEGSYGCVCDHEGNPTWEIKMSTLPWRQGQR--------LLTPKALGSKEFAKIPS 335
BLAST of mRNA_H-elongata_contig5007.12231.1 vs. uniprot
Match: A0A8J5XXE1_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XXE1_DIALT) HSP 1 Score: 195 bits (495), Expect = 3.480e-52 Identity = 134/370 (36.22%), Postives = 167/370 (45.14%), Query Frame = 1
Query: 1 IAGAWRRPLFVGGWTHSDDSSQEGELTFNLQTPTLFLDLRVPKASAALLGHHQGFDTMSDLELRLFARRHAFAGYTRVQAFSRPPADGESGGDGTEKRGLVATRHHAIDWNYVGQPRTRPNKWRVEMEPGG----------------DTWKEWGFAQDDFDQHVYMERWQRLPG---GGGPYFALRRRPSASSPSAPDSLIIVCGDHFGLILDRS----LEVVKGRGGADRGGRLVDLVDDTVARGGRREAVELMSLEASHGRIRGYRDVPPWTIDCSLHPWLKGRRPFLGTVITILTDEGNGTLEISAASSTEKPTARKMKLQNTVERAEQGVGHQEDAFWWIGTPLNGVWDVVESTLVAGSPDSLRKL 1041
G W RPLF GW S D E FN+QT F+DLRVP A +L G D ++ ELRL AR+H F GYT + + P A LV TRHHAIDWN+VG PR RPNKWRVEM P G WKEW FA DD Q YMERW R+ G G GP ALR S S PD I++ GDHF R+ L + G A LV++VD VARG A + L HGR+ W ID HPWL+G + ++ +G+ E+ A + Q + H D IG W++++ T + G+ D L L
Sbjct: 76 FVGVWSRPLFTNGWEESTDVD---EAAFNVQTRGAFIDLRVPTARPSL-GSAGSLDALAAEELRLLARQHVFCGYT-LPVSAAPGAP------------LVCTRHHAIDWNFVGVPRARPNKWRVEMPPPGLRLGPSTAQGASGAAAAAWKEWSFALDDAGQSYYMERWARVDGDGDGAGPTLALR------SCSQPDEFIVLVGDHFAFARARAGCPLLPPARADGAAPPPASLVEMVDGAVARGDLATARSWLGLAGGHGRVSA-----GWRIDLCTHPWLEGTQLLRSDMVAGAIVDGHAAGEVHA------------------DLRAQALVHGADNVVVIG---GRPWELLDRTGLRGAEDVLHVL 396
BLAST of mRNA_H-elongata_contig5007.12231.1 vs. uniprot
Match: A0A7S3Z9A1_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z9A1_9EUKA) HSP 1 Score: 191 bits (485), Expect = 4.470e-51 Identity = 107/265 (40.38%), Postives = 148/265 (55.85%), Query Frame = 1
Query: 1 IAGAWRRPLFVGGWTHSDDSSQEGELTFNLQTPTLFLDLRVPKASAALLGHHQGFDTMSDLELRLFARRHAFAGYTRVQAFSRPPADGESGGDGTEKRGLVATRHHAIDWNYVGQ-PRTRPNKWRVEMEPGGDTWKEWGFAQDDFDQHVYMERWQRLPGGGGPYFALRRRPSASSPSAPDSLIIVCGDHFGLILDRSLEVVKGRGGADRGGRLVDLVDDTVARGGRREAVELMSLEASHGRIRGYRDVPPWTIDCSLHPWLKGRR 792
I GAWRRPLF GGW +S++ + FNLQ+P+LF+D+R P +GF +S ELR AR+H FAGY+ V GG G+ V TRHHA+DWNY PR RPN+WR+E+ P G+++KE+ A D+ Q VYMERW P G GPY A+R ++ ++L+IV G+HF DR + G +GG LVD G R + ++++LE S+GR+ + P W I S PW +G+R
Sbjct: 72 IVGAWRRPLFSGGWK---ESTEADTVVFNLQSPSLFIDIRFP-IKRPDYSKCKGFYELSMPELRSLARQHCFAGYSLVSP---------KGGTGSSP---VCTRHHALDWNYHPSFPRARPNRWRIELSPNGESFKEFSVALDEHKQAVYMERWAMYPNGKGPYLAMRLVKPENAADHRETLLIVVGNHFAFARDRK-HPLPSFPGVSKGG-CASLVDAAFRAGEREKMEQMLNLEGSYGRVCDHEGNPTWEIKMSTLPWRQGQR 318 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5007.12231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5007.12231.1 >prot_H-elongata_contig5007.12231.1 ID=prot_H-elongata_contig5007.12231.1|Name=mRNA_H-elongata_contig5007.12231.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=324bp MSDLELRLFARRHAFAGYTRVQAFSRPPADGESGGDGTEKRGLVATRHHAback to top mRNA from alignment at H-elongata_contig5007:3380..6900+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5007.12231.1 ID=mRNA_H-elongata_contig5007.12231.1|Name=mRNA_H-elongata_contig5007.12231.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3521bp|location=Sequence derived from alignment at H-elongata_contig5007:3380..6900+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5007:3380..6900+ >mRNA_H-elongata_contig5007.12231.1 ID=mRNA_H-elongata_contig5007.12231.1|Name=mRNA_H-elongata_contig5007.12231.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1944bp|location=Sequence derived from alignment at H-elongata_contig5007:3380..6900+ (Himanthalia elongata Himel1 dioecious)back to top |