mRNA_H-elongata_contig50057.12227.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50057.12227.1
Unique NamemRNA_H-elongata_contig50057.12227.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50057.12227.1 vs. uniprot
Match: D7G3L5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3L5_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.490e-46
Identity = 90/116 (77.59%), Postives = 100/116 (86.21%), Query Frame = 1 
Query:    1 ATSGSTSLVSLLDPHPEDVLALDADGCTPLHHAAASCKYDVVKFLASRANGRVYVPQRIKTNSVDAYMQETRATKRISMRIIQEARQRTGRFAVRTGAVVGKATSGASTMRGLTTR 348
            ATSGSTSL+SLLDP PEDVL LD+DGCTPLHHAAAS KYDVVKFLASRANGRV+ P RIKT+SVDA+MQETRATKRISMRIIQEARQR G   VRTG V+G    GA+ +RGL ++
Sbjct: 1321 ATSGSTSLLSLLDPLPEDVLVLDSDGCTPLHHAAASSKYDVVKFLASRANGRVHAPARIKTDSVDAFMQETRATKRISMRIIQEARQRAGVTTVRTGGVLGTLAGGAAAVRGLASK 1436
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BLAST of mRNA_H-elongata_contig50057.12227.1 vs. uniprot
Match: A0A836CBL8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL8_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.010e-19
Identity = 55/88 (62.50%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:    1 ATSGSTSLVSLLDPHPEDVLALDADGCTPLHHAAASCKYDVVKFLASRANGRVYV-PQRIKTNSVDAYMQETRATKRISMRIIQEARQ 261
            A  GSTSLVSLLDP PEDVL  DADG TPLHHA AS KYD+VKFLA+RAN +V+V P      ++DA   E  AT RIS+R   EAR+
Sbjct: 1003 AQGGSTSLVSLLDPLPEDVLLRDADGNTPLHHACASAKYDLVKFLAARANTQVHVGPALAGKGTMDAA--ELSATTRISLRFASEARE 1088
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50057.12227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3L5_ECTSI1.490e-4677.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBL8_9STRA1.010e-1962.50P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50057contigH-elongata_contig50057:2903..3615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.6
Seed ortholog evalue1.1e-40
Seed eggNOG ortholog2880.D7G3L5
KEGG koko:K10352,ko:K10357
KEGG Pathwayko04530,map04530
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03029,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-00_006620.1
Exons3
Model size350
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50057.12227.1prot_H-elongata_contig50057.12227.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50057 2903..3613 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.840536-CDS-H-elongata_contig50057:2902..30581622930823.840536-CDS-H-elongata_contig50057:2902..3058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50057 2903..3058 +
1691679585.9899144-CDS-H-elongata_contig50057:2902..30581691679585.9899144-CDS-H-elongata_contig50057:2902..3058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50057 2903..3058 +
1622930823.864479-CDS-H-elongata_contig50057:3285..33781622930823.864479-CDS-H-elongata_contig50057:3285..3378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50057 3286..3378 +
1691679586.001135-CDS-H-elongata_contig50057:3285..33781691679586.001135-CDS-H-elongata_contig50057:3285..3378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50057 3286..3378 +
1622930823.8783512-CDS-H-elongata_contig50057:3514..36131622930823.8783512-CDS-H-elongata_contig50057:3514..3613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50057 3515..3613 +
1691679586.0096219-CDS-H-elongata_contig50057:3514..36131691679586.0096219-CDS-H-elongata_contig50057:3514..3613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50057 3515..3613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50057.12227.1

>prot_H-elongata_contig50057.12227.1 ID=prot_H-elongata_contig50057.12227.1|Name=mRNA_H-elongata_contig50057.12227.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
ATSGSTSLVSLLDPHPEDVLALDADGCTPLHHAAASCKYDVVKFLASRAN
GRVYVPQRIKTNSVDAYMQETRATKRISMRIIQEARQRTGRFAVRTGAVV
GKATSGASTMRGLTTR
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mRNA from alignment at H-elongata_contig50057:2903..3615+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50057.12227.1 ID=mRNA_H-elongata_contig50057.12227.1|Name=mRNA_H-elongata_contig50057.12227.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=713bp|location=Sequence derived from alignment at H-elongata_contig50057:2903..3615+ (Himanthalia elongata Himel1 dioecious)
GCAACGAGCGGCAGCACCTCCTTGGTTTCGCTGTTGGATCCTCATCCCGA
GGACGTGCTCGCGCTGGATGCCGACGGCTGTACCCCGTTGCACCATGCGG
CCGCCTCCTGCAAGTACGATGTTGTAAAGTTTTTGGCCTCCCGAGCCAAT
GGACGGGTAAGTCGGAATGGCAGTCATTCTAAAATCTAAAACCTCACAAA
TTTCAAGCATTAAATATTCTATATGTGAGCTTGTGATTGAAGAAAACTTT
AAAATAAAAACCATGTTACTCTTTTCTTAAGCATACATTAGTTCAATATA
ATATTGAATATTGAATATTGCACTCTGTGGTACTACGATAAAAAAAATTC
AAATATCCAAAAATATATTGTTGCGCACGCCAGGTTTACGTCCCTCAGCG
TATCAAGACGAACTCCGTGGACGCTTACATGCAGGAAACGCGCGCCACCA
AGCGTATCAGCATGCGAATCATTCAGGTATCAGTGGTGGCTTGGTAGGAA
GCATAACATATTTTTTCTCTCTTAAATATTTTAATAGTCCTACCTAAACA
TTACGCAGACCAATCGACGCGAGTTTGTAACACTCTTTAATTGCGACACA
TTTTTTTCACAGGAGGCGCGCCAGAGGACTGGCCGGTTTGCGGTGAGGAC
CGGAGCCGTAGTGGGAAAGGCCACAAGCGGTGCGTCCACGATGCGAGGCC
TGACCACCAGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig50057:2903..3615+

>mRNA_H-elongata_contig50057.12227.1 ID=mRNA_H-elongata_contig50057.12227.1|Name=mRNA_H-elongata_contig50057.12227.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig50057:2903..3615+ (Himanthalia elongata Himel1 dioecious)
GCAACGAGCGGCAGCACCTCCTTGGTTTCGCTGTTGGATCCTCATCCCGA
GGACGTGCTCGCGCTGGATGCCGACGGCTGTACCCCGTTGCACCATGCGG
CCGCCTCCTGCAAGTACGATGTTGTAAAGTTTTTGGCCTCCCGAGCCAAT
GGACGGGCAACGAGCGGCAGCACCTCCTTGGTTTCGCTGTTGGATCCTCA
TCCCGAGGACGTGCTCGCGCTGGATGCCGACGGCTGTACCCCGTTGCACC
ATGCGGCCGCCTCCTGCAAGTACGATGTTGTAAAGTTTTTGGCCTCCCGA
GCCAATGGACGGGTTTACGTCCCTCAGCGTATCAAGACGAACTCCGTGGA
CGCTTACATGCAGGAAACGCGCGCCACCAAGCGTATCAGCATGCGAATCA
TTCAGGTTTACGTCCCTCAGCGTATCAAGACGAACTCCGTGGACGCTTAC
ATGCAGGAAACGCGCGCCACCAAGCGTATCAGCATGCGAATCATTCAGGA
GGCGCGCCAGAGGACTGGCCGGTTTGCGGTGAGGACCGGAGCCGTAGTGG
GAAAGGCCACAAGCGGTGCGTCCACGATGCGAGGCCTGACCACCAGGGAG
GCGCGCCAGAGGACTGGCCGGTTTGCGGTGAGGACCGGAGCCGTAGTGGG
AAAGGCCACAAGCGGTGCGTCCACGATGCGAGGCCTGACCACCAGG
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