prot_H-elongata_contig50043.12226.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50043.12226.1
Unique Nameprot_H-elongata_contig50043.12226.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length101
Homology
[Close]
BLAST of mRNA_H-elongata_contig50043.12226.1 vs. uniprot
Match: D8LLB1_ECTSI (Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB1_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.020e-14
Identity = 49/77 (63.64%), Postives = 54/77 (70.13%), Query Frame = 0 
Query:   26 AFLGNRRISLSTKSTARSGGERGSS-VNMLATEPILKATSKSASSRLAKVFDGVVETKKAAFITNLTAGYPKKGDTV 101
            A  G R   L T STAR GG   SS + M+ATEP+LK TSKSAS RLAKVF  V E K+AAFI  LTAGYPK+ DTV
Sbjct:   17 AGAGARAAPLHTASTARGGGAAASSPLRMVATEPVLKPTSKSASPRLAKVFGDVAEDKQAAFIPYLTAGYPKRDDTV 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50043.12226.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLB1_ECTSI1.020e-1463.64Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50043contigH-elongata_contig50043:855..1405 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50043.12226.1mRNA_H-elongata_contig50043.12226.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50043 855..1405 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50043.12226.1 ID=prot_H-elongata_contig50043.12226.1|Name=mRNA_H-elongata_contig50043.12226.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
GAGRSIQHAGRRGLASEAASQRTSLAFLGNRRISLSTKSTARSGGERGSS
VNMLATEPILKATSKSASSRLAKVFDGVVETKKAAFITNLTAGYPKKGDT
V
back to top