mRNA_H-elongata_contig115380.1221.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: D7FVK1_ECTSI (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK1_ECTSI) HSP 1 Score: 225 bits (573), Expect = 2.200e-67 Identity = 109/130 (83.85%), Postives = 115/130 (88.46%), Query Frame = 1
Query: 1 RRVMKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTRV----------DFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNADTV 360
RRVMKD GADITCGEMALS+ +LKGNGSEWALLRRHP EDVFGVQVAGAHPDQMTRV DFVD+NMGCPIDLVCDKGMGAALMGR RKLRGI+AGM+SQL+CPLTVKMRVGWDEKKPNAD V
Sbjct: 371 RRVMKDQGADITCGEMALSHHLLKGNGSEWALLRRHPSEDVFGVQVAGAHPDQMTRVAELLEKNAKMDFVDINMGCPIDLVCDKGMGAALMGRSRKLRGIIAGMSSQLTCPLTVKMRVGWDEKKPNADVV 500
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: A0A835ZAB5_9STRA (Dus domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAB5_9STRA) HSP 1 Score: 188 bits (478), Expect = 1.970e-56 Identity = 89/130 (68.46%), Postives = 101/130 (77.69%), Query Frame = 1
Query: 1 RRVMKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTRV----------DFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNADTV 360
RR+MKD GADITCGEMAL +LKG SEWALL+RH CEDVFGVQVAG HPDQMTRV DFVD+NMGCPIDLVC +GMG+ALM + RK+RGI+ GMTS L P+TVKMRVGWD+K P A +
Sbjct: 22 RRIMKDLGADITCGEMALGQNLLKGQASEWALLKRHACEDVFGVQVAGGHPDQMTRVAELIRNEASVDFVDINMGCPIDLVCKQGMGSALMNKQRKVRGILMGMTSILEVPVTVKMRVGWDDKTPTAHKI 151
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: A0A1E7EIW9_9STRA (FMN-linked oxidoreductase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EIW9_9STRA) HSP 1 Score: 172 bits (437), Expect = 1.840e-50 Identity = 81/127 (63.78%), Postives = 98/127 (77.17%), Query Frame = 1
Query: 1 RRVMKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTRV----------DFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNA 351
RR+MK FGADITCGEMALS +L+G SEWALL+RHP ED+FGVQ+A AHPDQ TRV DFVD+N+GCP+DL+C+KG GAALM R RKL+G + GM++ LSC +TVKMR GW+ KP A
Sbjct: 26 RRIMKQFGADITCGEMALSTNLLEGKASEWALLKRHPSEDIFGVQLAAAHPDQFTRVSELVEKYTDVDFVDMNLGCPLDLLCNKGAGAALMMRERKLKGALEGMSNNLSCSITVKMRTGWNIHKPFA 152
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: A0A7S2RFF3_9STRA (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFF3_9STRA) HSP 1 Score: 173 bits (438), Expect = 1.120e-48 Identity = 82/130 (63.08%), Postives = 98/130 (75.38%), Query Frame = 1
Query: 1 RRVMKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTR----------VDFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNADTV 360
RRVMK FGADITCGEMA++ IL G SEWALL+RHP ED+FGVQ+A H DQ+TR VDFVDVNMGCPIDLVC+ G GAALM RP K++ IV G+T+ LSCP+T+KMR GW+E+ P A +
Sbjct: 257 RRVMKRFGADITCGEMAMAQNILSGQPSEWALLKRHPSEDIFGVQIASPHADQLTRCSELIEQFVKVDFVDVNMGCPIDLVCNVGAGAALMQRPNKVKQIVRGLTATLSCPITLKMRTGWNERHPMAHNL 386
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: A0A7S2PN00_9STRA (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PN00_9STRA) HSP 1 Score: 171 bits (434), Expect = 1.330e-48 Identity = 79/127 (62.20%), Postives = 96/127 (75.59%), Query Frame = 1
Query: 1 RRVMKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTRV----------DFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNA 351
RR++K GADITCGEMA++ +LKG GSEWALL+RHPCEDVFGVQ+A H DQ TRV DFVD+N+GCPIDL+CDKG G+ALM R +KL+ + G++ LSCP TVKMR GW+EK P A
Sbjct: 185 RRILKGLGADITCGEMAVAENLLKGQGSEWALLKRHPCEDVFGVQIAAPHADQFTRVCELIDAQCEVDFVDLNLGCPIDLICDKGAGSALMLRDKKLKASLMGISDALSCPFTVKMRTGWNEKDPIA 311
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: B8BWN9_THAPS (Dus domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWN9_THAPS) HSP 1 Score: 166 bits (420), Expect = 8.420e-48 Identity = 78/129 (60.47%), Postives = 98/129 (75.97%), Query Frame = 1
Query: 1 RRVMKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTRV------------DFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNA 351
RR+MK FGADITCGEMA+++Q+L+G SEWALL+RH EDVFGVQ+A H DQ TRV DFVD+N+GCPIDLVC+KG GA+LM R RKL+G V G+T L+CP+T+K+R GW+E +P A
Sbjct: 29 RRIMKGFGADITCGEMAIADQLLQGKPSEWALLKRHSSEDVFGVQIATGHADQYTRVAELIANEPEIEVDFVDMNLGCPIDLVCEKGAGASLMLRERKLKGSVEGLTKTLNCPVTIKIRTGWNENEPIA 157
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: K0SB97_THAOC (Dus domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SB97_THAOC) HSP 1 Score: 167 bits (423), Expect = 5.040e-47 Identity = 79/134 (58.96%), Postives = 99/134 (73.88%), Query Frame = 1
Query: 1 RRVMKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTR------------VDFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNADTVKK 366
RR+MK+FGADITCGEMAL++Q+L+G SEWALL+RH EDVFGVQ+A HPDQ TR VDFVD+N+GCP+DLVCDKG GA LM R KL+G V GM + L+CP+T+KMR GW + P A +++
Sbjct: 337 RRIMKNFGADITCGEMALADQLLQGRQSEWALLKRHASEDVFGVQIASGHPDQYTRICEVLANEESLDVDFVDMNLGCPLDLVCDKGAGAKLMLRDSKLKGSVKGMLNVLNCPVTIKMRTGWSSEHPIAHELQR 470
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: L8GS14_ACACA (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GS14_ACACA) HSP 1 Score: 168 bits (425), Expect = 1.390e-46 Identity = 80/127 (62.99%), Postives = 95/127 (74.80%), Query Frame = 1
Query: 1 RRVMKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTR----------VDFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNA 351
RR+ K GADITCGEMAL+ +L+G SEWALLRRHP ED+FGVQ+ G HPD +T+ VDFVD+N GCPIDLV +KG G+AL+ RPR+L GIV GM + LSCPLTVK+R G DEK PNA
Sbjct: 326 RRICKTLGADITCGEMALAENLLQGQPSEWALLRRHPSEDIFGVQLCGPHPDHLTKCGQVLDETISVDFVDINCGCPIDLVVNKGAGSALLDRPRRLEGIVRGMATVLSCPLTVKIRTGKDEKAPNA 452
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: A0A812U5K9_9DINO (DUS3L protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812U5K9_9DINO) HSP 1 Score: 166 bits (419), Expect = 7.470e-46 Identity = 78/130 (60.00%), Postives = 96/130 (73.85%), Query Frame = 1
Query: 1 RRVMKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTR----------VDFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNADTV 360
RR+M GAD+T EMAL++Q+LKG EWAL++RHPCE +FG+QVAGAHP+ M R VDFVDVNMGCPIDLVC +GMG+ LMGR K+RGI+ MTS + PLT+KMR+G D+KKP A V
Sbjct: 240 RRIMVGLGADVTVSEMALAHQLLKGENREWALVKRHPCEKMFGLQVAGAHPEDMGRLAELVQNELTVDFVDVNMGCPIDLVCQRGMGSTLMGRQAKIRGIIKNMTSMMDAPLTLKMRIGIDDKKPIAHKV 369
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: A0A448ZFI2_9STRA (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFI2_9STRA) HSP 1 Score: 164 bits (416), Expect = 3.530e-45 Identity = 76/127 (59.84%), Postives = 96/127 (75.59%), Query Frame = 1
Query: 1 RRVMKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTRV----------DFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNA 351
RR+MK +GADITCGEMA++ +L+G SEWALL+RHP EDVFG+Q+A AH DQ TRV DFVD+N+GCP+DL+C+KG GAALM R KL+G +AGM+ LSC +TVKMR GW+ +P A
Sbjct: 340 RRIMKQYGADITCGEMAVATNLLEGKTSEWALLKRHPSEDVFGIQIAAAHADQFTRVSELIEKYTDVDFVDMNLGCPLDLLCNKGAGAALMMRENKLKGALAGMSKNLSCSITVKMRTGWNIHRPFA 466 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig115380.1221.1 >prot_H-elongata_contig115380.1221.1 ID=prot_H-elongata_contig115380.1221.1|Name=mRNA_H-elongata_contig115380.1221.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp MKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQback to top mRNA from alignment at H-elongata_contig115380:455..2025+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig115380.1221.1 ID=mRNA_H-elongata_contig115380.1221.1|Name=mRNA_H-elongata_contig115380.1221.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1571bp|location=Sequence derived from alignment at H-elongata_contig115380:455..2025+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig115380:455..2025+ >mRNA_H-elongata_contig115380.1221.1 ID=mRNA_H-elongata_contig115380.1221.1|Name=mRNA_H-elongata_contig115380.1221.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig115380:455..2025+ (Himanthalia elongata Himel1 dioecious)back to top |