mRNA_H-elongata_contig49797.12197.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49797.12197.1
Unique NamemRNA_H-elongata_contig49797.12197.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49797.12197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49797contigH-elongata_contig49797:2895..3332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size438
Cds size123
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49797.12197.1prot_H-elongata_contig49797.12197.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49797 3019..3141 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930820.4867802-UTR-H-elongata_contig49797:2894..30181622930820.4867802-UTR-H-elongata_contig49797:2894..3018Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49797 2895..3018 +
1691679584.4285803-UTR-H-elongata_contig49797:2894..30181691679584.4285803-UTR-H-elongata_contig49797:2894..3018Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49797 2895..3018 +
1622930820.5248604-UTR-H-elongata_contig49797:3141..33321622930820.5248604-UTR-H-elongata_contig49797:3141..3332Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49797 3142..3332 +
1691679584.4593697-UTR-H-elongata_contig49797:3141..33321691679584.4593697-UTR-H-elongata_contig49797:3141..3332Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49797 3142..3332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930820.5032582-CDS-H-elongata_contig49797:3018..31411622930820.5032582-CDS-H-elongata_contig49797:3018..3141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49797 3019..3141 +
1691679584.4434693-CDS-H-elongata_contig49797:3018..31411691679584.4434693-CDS-H-elongata_contig49797:3018..3141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49797 3019..3141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49797.12197.1

>prot_H-elongata_contig49797.12197.1 ID=prot_H-elongata_contig49797.12197.1|Name=mRNA_H-elongata_contig49797.12197.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
MWLFISTRPEISNTVRAIFRKCTAPRAIHWKVALAIFGVH*
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mRNA from alignment at H-elongata_contig49797:2895..3332+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49797.12197.1 ID=mRNA_H-elongata_contig49797.12197.1|Name=mRNA_H-elongata_contig49797.12197.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at H-elongata_contig49797:2895..3332+ (Himanthalia elongata Himel1 dioecious)
CAATAACTGATTGGTTGATAACGAAGAGTTGAATAGCACTTCAACGGATA
GGACAATTTATTTTCAATATCGTTTGAATCATAGGACTGAAAAATAGTAA
GTGGTACATTAGTTAAGACGTTTGATGTGGCTTTTCATATCGACGCGTCC
AGAAATCTCAAATACAGTGCGAGCTATTTTTAGAAAATGTACCGCGCCGA
GAGCTATCCACTGGAAGGTAGCTTTAGCTATTTTTGGAGTACATTAATGG
AGTTAGTAGGTACGGTATAAAACTACATCCCAGAGAGGATGATTACTTAA
TATTTCTTGTATTCGTAAAATACTTACTACGCCTTGAAAGAAAATTGACA
GAGGCTTTAGCATATAATTGTTTGTATTTTACCATATAAATTCCCCACGA
ATTTTAAGTAACTTTCTCATTAAATAGTTGAGAACGAC
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Coding sequence (CDS) from alignment at H-elongata_contig49797:2895..3332+

>mRNA_H-elongata_contig49797.12197.1 ID=mRNA_H-elongata_contig49797.12197.1|Name=mRNA_H-elongata_contig49797.12197.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig49797:2895..3332+ (Himanthalia elongata Himel1 dioecious)
ATGTGGCTTTTCATATCGACGCGTCCAGAAATCTCAAATACAGTGCGAGC
TATTTTTAGAAAATGTACCGCGCCGAGAGCTATCCACTGGAAGGTAGCTT
TAGCTATTTTTGGAGTACATTAAATGTGGCTTTTCATATCGACGCGTCCA
GAAATCTCAAATACAGTGCGAGCTATTTTTAGAAAATGTACCGCGCCGAG
AGCTATCCACTGGAAGGTAGCTTTAGCTATTTTTGGAGTACATTAA
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