prot_H-elongata_contig11533.1217.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig11533.1217.1
Unique Name	prot_H-elongata_contig11533.1217.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	120

Homology

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BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: A0A0B7BG64_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7BG64_9EUPU)

HSP 1 Score: 111 bits (277), Expect = 2.080e-28
Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = 0

Query:    1 VATGYCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 120
            V+TGYC +T TGH +WVR V +  DG ++ASC NDQ+V+VW V    +C  +LREH HVVE +++AP+SAQ  +  A                   F+ SGSRDKT+K+W+ +VG CL T
Sbjct:    1 VSTGYCVKTYTGHREWVRMVKVYQDGSLLASCSNDQTVRVW-VTATKECKAELREHEHVVECISWAPDSAQPAINEAAGAESKSAKRSGP------FLLSGSRDKTLKMWDVSVGLCLFT 113

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BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: A0A8M1KI82_CLUHA (lissencephaly-1 homolog B-like n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KI82_CLUHA)

HSP 1 Score: 111 bits (277), Expect = 3.290e-28
Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = 0

Query:    1 VATGYCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 120
            +A+ YC +T TGH +WVR V  + DG ++ASC NDQ+V+VW V    +C  +LREH HVVE +++APESA  T+  AT                  F+ SGSRDKT+K+W+ + G CLMT
Sbjct:   19 LASSYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV-ATKECKAELREHEHVVECISWAPESAHPTILEATGSENKKSGKPGP------FLLSGSRDKTIKMWDVSTGMCLMT 131

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BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: A0A673IB16_9TELE (Lissencephaly-1 homolog B-like n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673IB16_9TELE)

HSP 1 Score: 110 bits (276), Expect = 1.200e-26
Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = 0

Query:    5 YCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 120
            YC +T TGH +WVR V  + DG ++ASC NDQ+V+VW V    +C  +LREH HVVE +++APESA  T++ AT                  F+ SGSRDKT+K+W+ + G CLMT
Sbjct:  191 YCVKTFTGHREWVRMVRPNQDGTLLASCSNDQTVRVWVV-ANKECKAELREHEHVVECISWAPESAHPTISEATGSENKKSGKPGP------FLLSGSRDKTIKMWDISTGMCLMT 299

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BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: A0A6I9YCL1_9SAUR (platelet-activating factor acetylhydrolase IB subunit alpha n=1 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9YCL1_9SAUR)

HSP 1 Score: 107 bits (268), Expect = 1.190e-25
Identity = 53/116 (45.69%), Postives = 72/116 (62.07%), Query Frame = 0

Query:    5 YCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 120
            YC +T TGH +WVR V  + DG ++ASC NDQ+V+VW V    +C  +LREH HVVE +++APES+  T+  AT                  F+ SGSRDKT+K+W+ + G CLMT
Sbjct:  164 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV-ATKECKAELREHEHVVECISWAPESSYSTILEATGSETKKSGKPGP------FLLSGSRDKTIKMWDISTGMCLMT 272

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BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: A0A6P3Q4Z2_PTEVA (Platelet-activating factor acetylhydrolase IB subunit alpha n=6 Tax=Amniota TaxID=32524 RepID=A0A6P3Q4Z2_PTEVA)

HSP 1 Score: 108 bits (270), Expect = 1.220e-25
Identity = 53/118 (44.92%), Postives = 74/118 (62.71%), Query Frame = 0

Query:    3 TGYCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 120
            T YC +T TGH +WVR V  + DG ++ASC NDQ+V+VW V    +C  +LREH HVVE +++APES+  +++ AT                  F+ SGSRDKT+K+W+ + G CLMT
Sbjct:  215 TDYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV-ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGP------FLLSGSRDKTIKMWDVSTGMCLMT 325

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BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: A0A8C7QR40_ONCMY (LisH domain-containing protein n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A8C7QR40_ONCMY)

HSP 1 Score: 108 bits (269), Expect = 1.710e-25
Identity = 53/116 (45.69%), Postives = 72/116 (62.07%), Query Frame = 0

Query:    5 YCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 120
            YC +T TGH +WVR V  + DG ++ASC NDQ+V+VW V    +C  +LREH HVVE +A+AP++A  T+  AT                  F+ SGSRDKT+K+W+ + G CLMT
Sbjct:  218 YCVKTFTGHREWVRMVRPNQDGSLIASCSNDQTVRVW-VATSKECKAELREHEHVVECIAWAPDTAHPTILEATGSESKKSGKPGP------FLLSGSRDKTIKMWDISTGMCLMT 326

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BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: T1I273_RHOPR (Uncharacterized protein n=1 Tax=Rhodnius prolixus TaxID=13249 RepID=T1I273_RHOPR)

HSP 1 Score: 101 bits (251), Expect = 6.000e-25
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 0

Query:    5 YCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 120
            YC +TL+GH +WVR+V +S DG ++AS  NDQ+V+VW +    +C  +LR H HVVE + +APES+   +  A             GA    F+ASGSRDKT+K+W+ + G CL T
Sbjct:   12 YCVKTLSGHREWVRQVRISPDGTLVASASNDQTVRVWVI-SSKECKAELRGHDHVVECIGWAPESSYSAVNEAAGADNKK------GAYEGPFLASGSRDKTIKVWDVSRGICLFT 120

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BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: A0A6L5CYW9_9INSE (LisH domain-containing protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5CYW9_9INSE)

HSP 1 Score: 104 bits (259), Expect = 3.890e-24
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 0

Query:    5 YCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 120
            YC +T TGH +WVR V  S DG ++ASC NDQ+V+VW +    +C  +LR+H HVVE + +APE+A   +  A             GA A  F+ASGSRDKT+++W+   G CL T
Sbjct:  202 YCVKTFTGHREWVRAVRASPDGSLLASCSNDQTVRVW-LASTRECKIELRDHDHVVECITWAPETANSAINEAAGADNKK------GAHAGPFLASGSRDKTIRVWDVGTGLCLFT 310

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BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: A0A7R9HJ40_TIMPO (Hypothetical protein n=1 Tax=Timema poppense TaxID=170557 RepID=A0A7R9HJ40_TIMPO)

HSP 1 Score: 95.5 bits (236), Expect = 3.410e-23
Identity = 49/104 (47.12%), Postives = 65/104 (62.50%), Query Frame = 0

Query:    5 YCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVK 108
            YC +T TGH+DWVR V + +DG ++ASC NDQ+V+VW       C  +LR+H HVVE +A+AP+SA   +  A             GA A  F+ASGSRDKT+K
Sbjct:    1 YCVKTFTGHSDWVRMVRVYEDGSLIASCSNDQTVRVWYT-ANKDCKVELRDHDHVVECIAWAPDSAAPAINEAAGADNKK------GAHAGPFLASGSRDKTIK 97

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BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: D7G1C0_ECTSI (Lissencephaly-1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.040e-22
Identity = 60/119 (50.42%), Postives = 68/119 (57.14%), Query Frame = 0

Query:    2 ATGYCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 120
            ATG+CTRTL G ++WVRRV+LSDDG                                VVE++AFAPESA+R LA A             GA  RRFVASGSRDKTVKLWNA+VGHCLMT
Sbjct:  232 ATGFCTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VVESIAFAPESAERALATAVGSEGGGGGE---GAVRRRFVASGSRDKTVKLWNASVGHCLMT 346

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot

BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B7BG64_9EUPU	2.080e-28	45.83	Uncharacterized protein (Fragment) n=1 Tax=Arion v...	[more]
A0A8M1KI82_CLUHA	3.290e-28	45.83	lissencephaly-1 homolog B-like n=1 Tax=Clupea hare...	[more]
A0A673IB16_9TELE	1.200e-26	46.55	Lissencephaly-1 homolog B-like n=1 Tax=Sinocycloch...	[more]
A0A6I9YCL1_9SAUR	1.190e-25	45.69	platelet-activating factor acetylhydrolase IB subu...	[more]
A0A6P3Q4Z2_PTEVA	1.220e-25	44.92	Platelet-activating factor acetylhydrolase IB subu...	[more]
A0A8C7QR40_ONCMY	1.710e-25	45.69	LisH domain-containing protein n=1 Tax=Oncorhynchu...	[more]
T1I273_RHOPR	6.000e-25	43.97	Uncharacterized protein n=1 Tax=Rhodnius prolixus ...	[more]
A0A6L5CYW9_9INSE	3.890e-24	44.83	LisH domain-containing protein n=1 Tax=Ephemera da...	[more]
A0A7R9HJ40_TIMPO	3.410e-23	47.12	Hypothetical protein n=1 Tax=Timema poppense TaxID...	[more]
D7G1C0_ECTSI	1.040e-22	50.42	Lissencephaly-1 homolog n=1 Tax=Ectocarpus silicul...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 3..42 e-value: 1.7E-10 score: 50.9 coord: 46..111 e-value: 1.3E-5 score: 34.7
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 5..42 e-value: 1.9E-8 score: 34.8 coord: 48..111 e-value: 7.3E-6 score: 26.6
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 80..120 score: 10.107
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 10..43 score: 13.683
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..120 e-value: 7.3E-32 score: 112.4
None	No IPR available	PANTHER	PTHR44129:SF7		coord: 1..120
None	No IPR available	PANTHER	PTHR44129	FAMILY NOT NAMED	coord: 1..120
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 98..112
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 10..120 score: 13.976
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 2..120

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig11533	contig	H-elongata_contig11533:7420..8323 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig11533.1217.1	mRNA_H-elongata_contig11533.1217.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig11533 7420..8323 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig11533.1217.1 ID=prot_H-elongata_contig11533.1217.1|Name=mRNA_H-elongata_contig11533.1217.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
VATGYCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCL
HDLREHTHVVETVAFAPESAQRTLAAATAASGHSSSSSSFGAAARRFVAS
GSRDKTVKLWNATVGHCLMT

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom
IPR036322	WD40_repeat_dom_sf