mRNA_H-elongata_contig11533.1217.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: A0A0B7BG64_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7BG64_9EUPU) HSP 1 Score: 111 bits (277), Expect = 2.080e-28 Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = 1
Query: 1 VATGYCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 360
V+TGYC +T TGH +WVR V + DG ++ASC NDQ+V+VW V +C +LREH HVVE +++AP+SAQ + A F+ SGSRDKT+K+W+ +VG CL T
Sbjct: 1 VSTGYCVKTYTGHREWVRMVKVYQDGSLLASCSNDQTVRVW-VTATKECKAELREHEHVVECISWAPDSAQPAINEAAGAESKSAKRSGP------FLLSGSRDKTLKMWDVSVGLCLFT 113
BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: A0A8M1KI82_CLUHA (lissencephaly-1 homolog B-like n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KI82_CLUHA) HSP 1 Score: 111 bits (277), Expect = 3.290e-28 Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = 1
Query: 1 VATGYCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 360
+A+ YC +T TGH +WVR V + DG ++ASC NDQ+V+VW V +C +LREH HVVE +++APESA T+ AT F+ SGSRDKT+K+W+ + G CLMT
Sbjct: 19 LASSYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV-ATKECKAELREHEHVVECISWAPESAHPTILEATGSENKKSGKPGP------FLLSGSRDKTIKMWDVSTGMCLMT 131
BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: A0A673IB16_9TELE (Lissencephaly-1 homolog B-like n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673IB16_9TELE) HSP 1 Score: 110 bits (276), Expect = 1.200e-26 Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = 1
Query: 13 YCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 360
YC +T TGH +WVR V + DG ++ASC NDQ+V+VW V +C +LREH HVVE +++APESA T++ AT F+ SGSRDKT+K+W+ + G CLMT
Sbjct: 191 YCVKTFTGHREWVRMVRPNQDGTLLASCSNDQTVRVWVV-ANKECKAELREHEHVVECISWAPESAHPTISEATGSENKKSGKPGP------FLLSGSRDKTIKMWDISTGMCLMT 299
BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: A0A6I9YCL1_9SAUR (platelet-activating factor acetylhydrolase IB subunit alpha n=1 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9YCL1_9SAUR) HSP 1 Score: 107 bits (268), Expect = 1.190e-25 Identity = 53/116 (45.69%), Postives = 72/116 (62.07%), Query Frame = 1
Query: 13 YCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 360
YC +T TGH +WVR V + DG ++ASC NDQ+V+VW V +C +LREH HVVE +++APES+ T+ AT F+ SGSRDKT+K+W+ + G CLMT
Sbjct: 164 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV-ATKECKAELREHEHVVECISWAPESSYSTILEATGSETKKSGKPGP------FLLSGSRDKTIKMWDISTGMCLMT 272
BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: A0A6P3Q4Z2_PTEVA (Platelet-activating factor acetylhydrolase IB subunit alpha n=6 Tax=Amniota TaxID=32524 RepID=A0A6P3Q4Z2_PTEVA) HSP 1 Score: 108 bits (270), Expect = 1.220e-25 Identity = 53/118 (44.92%), Postives = 74/118 (62.71%), Query Frame = 1
Query: 7 TGYCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 360
T YC +T TGH +WVR V + DG ++ASC NDQ+V+VW V +C +LREH HVVE +++APES+ +++ AT F+ SGSRDKT+K+W+ + G CLMT
Sbjct: 215 TDYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV-ATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGP------FLLSGSRDKTIKMWDVSTGMCLMT 325
BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: A0A8C7QR40_ONCMY (LisH domain-containing protein n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A8C7QR40_ONCMY) HSP 1 Score: 108 bits (269), Expect = 1.710e-25 Identity = 53/116 (45.69%), Postives = 72/116 (62.07%), Query Frame = 1
Query: 13 YCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 360
YC +T TGH +WVR V + DG ++ASC NDQ+V+VW V +C +LREH HVVE +A+AP++A T+ AT F+ SGSRDKT+K+W+ + G CLMT
Sbjct: 218 YCVKTFTGHREWVRMVRPNQDGSLIASCSNDQTVRVW-VATSKECKAELREHEHVVECIAWAPDTAHPTILEATGSESKKSGKPGP------FLLSGSRDKTIKMWDISTGMCLMT 326
BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: T1I273_RHOPR (Uncharacterized protein n=1 Tax=Rhodnius prolixus TaxID=13249 RepID=T1I273_RHOPR) HSP 1 Score: 101 bits (251), Expect = 6.000e-25 Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 1
Query: 13 YCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 360
YC +TL+GH +WVR+V +S DG ++AS NDQ+V+VW + +C +LR H HVVE + +APES+ + A GA F+ASGSRDKT+K+W+ + G CL T
Sbjct: 12 YCVKTLSGHREWVRQVRISPDGTLVASASNDQTVRVWVI-SSKECKAELRGHDHVVECIGWAPESSYSAVNEAAGADNKK------GAYEGPFLASGSRDKTIKVWDVSRGICLFT 120
BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: A0A6L5CYW9_9INSE (LisH domain-containing protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5CYW9_9INSE) HSP 1 Score: 104 bits (259), Expect = 3.890e-24 Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 1
Query: 13 YCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 360
YC +T TGH +WVR V S DG ++ASC NDQ+V+VW + +C +LR+H HVVE + +APE+A + A GA A F+ASGSRDKT+++W+ G CL T
Sbjct: 202 YCVKTFTGHREWVRAVRASPDGSLLASCSNDQTVRVW-LASTRECKIELRDHDHVVECITWAPETANSAINEAAGADNKK------GAHAGPFLASGSRDKTIRVWDVGTGLCLFT 310
BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: A0A7R9HJ40_TIMPO (Hypothetical protein n=1 Tax=Timema poppense TaxID=170557 RepID=A0A7R9HJ40_TIMPO) HSP 1 Score: 95.5 bits (236), Expect = 3.410e-23 Identity = 49/104 (47.12%), Postives = 65/104 (62.50%), Query Frame = 1
Query: 13 YCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVK 324
YC +T TGH+DWVR V + +DG ++ASC NDQ+V+VW C +LR+H HVVE +A+AP+SA + A GA A F+ASGSRDKT+K
Sbjct: 1 YCVKTFTGHSDWVRMVRVYEDGSLIASCSNDQTVRVWYT-ANKDCKVELRDHDHVVECIAWAPDSAAPAINEAAGADNKK------GAHAGPFLASGSRDKTIK 97
BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Match: D7G1C0_ECTSI (Lissencephaly-1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI) HSP 1 Score: 101 bits (251), Expect = 1.040e-22 Identity = 60/119 (50.42%), Postives = 68/119 (57.14%), Query Frame = 1
Query: 4 ATGYCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLHDLREHTHVVETVAFAPESAQRTLAAATXXXXXXXXXXXXGAAARRFVASGSRDKTVKLWNATVGHCLMT 360
ATG+CTRTL G ++WVRRV+LSDDG VVE++AFAPESA+R LA A GA RRFVASGSRDKTVKLWNA+VGHCLMT
Sbjct: 232 ATGFCTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VVESIAFAPESAERALATAVGSEGGGGGE---GAVRRRFVASGSRDKTVKLWNASVGHCLMT 346 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11533.1217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11533.1217.1 >prot_H-elongata_contig11533.1217.1 ID=prot_H-elongata_contig11533.1217.1|Name=mRNA_H-elongata_contig11533.1217.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp VATGYCTRTLTGHTDWVRRVSLSDDGEMMASCGNDQSVKVWSVHGGSQCLback to top mRNA from alignment at H-elongata_contig11533:7420..8323- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11533.1217.1 ID=mRNA_H-elongata_contig11533.1217.1|Name=mRNA_H-elongata_contig11533.1217.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=904bp|location=Sequence derived from alignment at H-elongata_contig11533:7420..8323- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11533:7420..8323- >mRNA_H-elongata_contig11533.1217.1 ID=mRNA_H-elongata_contig11533.1217.1|Name=mRNA_H-elongata_contig11533.1217.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig11533:7420..8323- (Himanthalia elongata Himel1 dioecious)back to top |