mRNA_H-elongata_contig49649.12168.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49649.12168.1
Unique NamemRNA_H-elongata_contig49649.12168.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: D8LQR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR6_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.950e-40
Identity = 69/105 (65.71%), Postives = 85/105 (80.95%), Query Frame = 1
Query:    4 QTRSTVIVVFRSMRVRDILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFFNNRID 318
            QT+S  IVVFR MR  +IL+PSFW++IWIDY+RFD +Y    SAG+NIDV NGHTTLLP+LFL+ SMV+PL   K+TGMV LL HYQMLY S++YF++FFN  ID
Sbjct:   76 QTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLASMVRPLADPKITGMVGLLAHYQMLYLSLLYFYAFFNTAID 180          
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A0L0FZ44_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FZ44_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 2.600e-30
Identity = 59/140 (42.14%), Postives = 88/140 (62.86%), Query Frame = 1
Query:    4 QTRSTVIVVFRSMRVRDILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFFN--NRIDKAISTNEVVIAVLCPTLVWVVFPLLGMYQGYRV 417
            Q +S   +  + + +     P  WS IWIDY  +DPSYAD  + G+NIDV NGH+TLLP+L + +S++ P+  AKVTGM+ +L+ YQ  YG+++YFFS+ N    +  A S   VV+   C   +W+VFP+LG Y   ++
Sbjct:   75 QPQSEDFIFVQDVPITKAFCPDLWSQIWIDYGYYDPSYADKTTFGFNIDVGNGHSTLLPSLLMAVSIISPIFSAKVTGMLGMLLFYQTWYGTVVYFFSYVNCGRYLKSAWSDIGVVLFANC---IWIVFPVLGFYCSVKL 211          
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A7S2WL51_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WL51_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.900e-29
Identity = 60/132 (45.45%), Postives = 85/132 (64.39%), Query Frame = 1
Query:   19 VIVVFRSMRVR--DILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFFNNRIDKAISTNEVVIAVLCPTLVWVVFPLLGMYQG 408
            V++ F ++ V   ++ +   W+++W  YS +DPSYAD RS G+ +DV NG++TL+PTLF + SM QPL  A+ TG+V LL  YQ  YG+++YF SF  N+  K     EV+I V     +W VFPLLGMY  
Sbjct:   87 VVLQFFTLDVHLGNLFDSRLWAEVWASYSVYDPSYADRRSFGFFVDVGNGYSTLVPTLFFLYSMTQPLCSARTTGIVGLLSFYQEFYGTVIYFLSFVMNKRYKNRPLYEVLIFVCFTNGLWFVFPLLGMYAS 218          
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A0S8ETM9_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium SG8_38_1 TaxID=1703408 RepID=A0A0S8ETM9_9DELT)

HSP 1 Score: 110 bits (274), Expect = 4.800e-27
Identity = 57/139 (41.01%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    1 RQTRSTVIVVFRSMRVRDILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFFNNRIDKAISTNEVVIAVLCPTLVWVVFPLLGMYQGYRV 417
            R+  +   V  R + +  I +   W+ IW  YS FDP Y+D RS GYNIDV NG TT+LP       M   LV  +V G+V +++ +QM YG+ +YFF FFNN   +  S  +V++ V    L+W++FPLLG+Y   R+
Sbjct:   85 REMAAVAQVFSRPIPILRIFSFREWTRIWSTYSLFDPGYSDRRSFGYNIDVGNGFTTILPATLFAFGMTFNLVPPRVLGIVGIIIFWQMFYGTAVYFFQFFNNDRHRGHSVRDVLLFVGVSNLLWLIFPLLGLYTSVRL 223          
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A661N1Z4_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661N1Z4_9DELT)

HSP 1 Score: 108 bits (270), Expect = 1.990e-26
Identity = 56/136 (41.18%), Postives = 82/136 (60.29%), Query Frame = 1
Query:   34 RSMRVRDILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFFNNRIDKAISTNEVVIAVLCPTLVWVVFPLLGMYQGYRVSRPTTNRV 441
            R + + ++L+ S W+ IW  YS FDP Y+D RS GYNIDV NG TTL+P L     M    + A+V G++ +++ +QM YG+ +YFF FFNN   K  S  ++V+ V    L+W VFPL G++    +    + RV
Sbjct:   98 RPIPLLNVLSFSQWTTIWSGYSLFDPGYSDRRSFGYNIDVGNGFTTLIPALVFASGMTFEWMPARVLGIIGIILFWQMFYGTAVYFFQFFNNDRHKGHSLRDLVVFVGITNLMWFVFPLWGLWASVELILDGSYRV 233          
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A7S4NL81_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NL81_9EUKA)

HSP 1 Score: 108 bits (270), Expect = 2.330e-26
Identity = 54/132 (40.91%), Postives = 86/132 (65.15%), Query Frame = 1
Query:   22 IVVFRSMRVRDILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFF---NNRIDKAISTNEVVIAVLCPTLVWVVFPLLGMYQG 408
            IV+F+ + +  +    FW+ +WIDY R+D +YAD  + GYNIDV NGH++L+P++ ++       + A++ GM+ LL +YQMLYG+++Y+FS+F   + R       N + I VL   ++WV+FPLLGMY  
Sbjct:   99 IVLFKDISLGQLFCTDFWAYVWIDYCRYDSAYADKTTFGYNIDVGNGHSSLIPSILMITFCYYEYLDARIAGMIGLLSNYQMLYGALVYYFSYFCGASARTHLQDRFNGLGI-VLFANILWVIFPLLGMYAS 229          
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A7Y3BND5_9DELT (Uncharacterized protein n=3 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A7Y3BND5_9DELT)

HSP 1 Score: 103 bits (258), Expect = 1.160e-24
Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    1 RQTRSTVIVVFRSMRVRDILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFFNNRIDKAISTNEVVIAVLCPTLVWVVFPLLGM 399
            R+ +    +  R + +  +L+   W+ IW  YS FDP Y+D RS GYNIDV NG TT++P       M   L+ A+  G++ L+M +QM YG+ +YFF FFNN   K  S  ++++ V    L+W VFP+LG+
Sbjct:   85 REMQRIAEIFARPIPLLQVLSFRQWTTIWSSYSLFDPGYSDRRSFGYNIDVGNGFTTIIPATLFAFGMTFELMPARWLGILGLIMFWQMFYGTAVYFFQFFNNGRHKGHSVKDLLLFVGITNLMWFVFPILGL 217          
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A6N8UJI7_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N8UJI7_9GAMM)

HSP 1 Score: 96.7 bits (239), Expect = 1.310e-22
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 1
Query:   55 ILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFFNNRIDKAISTNEVVIAVLCPTLVWVVFPLLGMYQGYRV 417
            +L+PS W+D+W  YS++DPS+AD R+ G+N+D  NG  +LLPTL L  S     +  +V G++ L M +Q +Y + +Y+ SFF       IS  ++ + VL     WV+ PLLG++   R+
Sbjct:   28 VLSPSLWADVWATYSQYDPSFADRRTYGFNVDTANGFLSLLPTLLLYASFTVYFLPPRVAGILGLAMFWQWVYMTSVYWISFFVANRQVEISRRDLYLYVLGTNAPWVLCPLLGLFVSIRI 148          
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A6N9B307_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N9B307_9GAMM)

HSP 1 Score: 96.7 bits (239), Expect = 1.020e-21
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 1
Query:   55 ILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFFNNRIDKAISTNEVVIAVLCPTLVWVVFPLLGMYQGYRV 417
            +L+PS W+D+W  YS++DPS+AD R+ G+N+D  NG  +LLPTL L  S     +  +V G++ L M +Q +Y + +Y+ SFF       IS  ++ + VL     WV+ PLLG++   R+
Sbjct:  117 VLSPSLWADVWATYSQYDPSFADRRTYGFNVDTANGFLSLLPTLLLYASFTVYFLPPRVAGILGLAMFWQWVYMTSVYWISFFVANRQVEISRRDLYLYVLGTNAPWVLCPLLGLFVSIRI 237          
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A7S0EDX6_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EDX6_9EUKA)

HSP 1 Score: 93.6 bits (231), Expect = 1.100e-20
Identity = 48/134 (35.82%), Postives = 81/134 (60.45%), Query Frame = 1
Query:   22 IVVFRSMRVRDILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSF-FNNRIDKAISTNEVVIAVLCPTL-VWVVFPLLGMYQGYRV 417
            I +F    +  I +  +W+ +W  YS  DPSY+D+ + G+ +DV NG TTLLPTL     M  P++ A++ G + + M++Q LYG+++YFF + FN R D+  S    V+ ++ P   +W+  P LG++  Y++
Sbjct:   85 IFLFERASLSQIFSLRYWAVMWSTYSVLDPSYSDTTTFGFCVDVGNGVTTLLPTLLWAAGMTWPILSARLMGAMGIAMYWQELYGTVIYFFQYMFNRRFDR--SPRAHVLGIVVPANGIWIACPALGIWASYQL 216          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQR6_ECTSI1.950e-4065.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0L0FZ44_9EUKA2.600e-3042.14Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A7S2WL51_9STRA3.900e-2945.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0S8ETM9_9DELT4.800e-2741.01Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A661N1Z4_9DELT1.990e-2641.18Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A7S4NL81_9EUKA2.330e-2640.91Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A7Y3BND5_9DELT1.160e-2439.85Uncharacterized protein n=3 Tax=Deltaproteobacteri... [more]
A0A6N8UJI7_9GAMM1.310e-2238.84Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A6N9B307_9GAMM1.020e-2138.84Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A7S0EDX6_9EUKA1.100e-2035.82Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49649contigH-elongata_contig49649:284..1518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.5
Seed ortholog evalue1.6e-31
Seed eggNOG ortholog2880.D8LQR6
EggNOG OGs2D1JK@1,2S4W9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_002010.1
Exons3
Model size447
Cds size447
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49649.12168.1prot_H-elongata_contig49649.12168.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49649 284..1518 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930817.3791523-CDS-H-elongata_contig49649:283..5111622930817.3791523-CDS-H-elongata_contig49649:283..511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49649 284..511 +
1691679582.9192615-CDS-H-elongata_contig49649:283..5111691679582.9192615-CDS-H-elongata_contig49649:283..511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49649 284..511 +
1622930817.3941705-CDS-H-elongata_contig49649:880..9661622930817.3941705-CDS-H-elongata_contig49649:880..966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49649 881..966 +
1691679582.9358244-CDS-H-elongata_contig49649:880..9661691679582.9358244-CDS-H-elongata_contig49649:880..966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49649 881..966 +
1622930817.4103036-CDS-H-elongata_contig49649:1385..15181622930817.4103036-CDS-H-elongata_contig49649:1385..1518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49649 1386..1518 +
1691679582.9451401-CDS-H-elongata_contig49649:1385..15181691679582.9451401-CDS-H-elongata_contig49649:1385..1518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49649 1386..1518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49649.12168.1

>prot_H-elongata_contig49649.12168.1 ID=prot_H-elongata_contig49649.12168.1|Name=mRNA_H-elongata_contig49649.12168.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
RQTRSTVIVVFRSMRVRDILNPSFWSDIWIDYSRFDPSYADSRSAGYNID
VCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSF
FNNRIDKAISTNEVVIAVLCPTLVWVVFPLLGMYQGYRVSRPTTNRVE*
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mRNA from alignment at H-elongata_contig49649:284..1518+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49649.12168.1 ID=mRNA_H-elongata_contig49649.12168.1|Name=mRNA_H-elongata_contig49649.12168.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1235bp|location=Sequence derived from alignment at H-elongata_contig49649:284..1518+ (Himanthalia elongata Himel1 dioecious)
CGACAGACCAGATCGACGGTAATCGTCGTATTCCGCTCCATGCGAGTGAG AGACATCCTGAATCCTTCCTTCTGGAGTGACATCTGGATAGACTATTCAC GCTTCGACCCCTCCTACGCGGACTCTCGATCGGCTGGCTACAACATCGAC GTCTGCAACGGCCACACAACGCTGCTGCCCACCCTGTTCTTGATGATGTC GATGGTCCAGCCGCTTGTTGGGGCGAAGGTCAGGCCGGAGCTCTACCTCC CCCCGTCCGATACACCTTGCCATTACCATTGTTCGTACACGCCGCAGCCG GAGAGGAAGCGATGCGTCTTCTTCGGTTCGACGCCGCATGGATATGTAAA ACCCTCAGGAGCCCCCCCCCCCCCCCATCGCCGACCTCTCCCCCATTGAT GAGAAGGAAGCAACCCCCACGCAATGGCAGTTAAACATGTGTAACCCTGT TTCTCACTTGGGCGCGCCTCAGCTGTCAACTGTGCACGGAACGAGCGATG GAATATGATTTGACGAGGCACGAGATGCGTGAAAACAGGCTGCTCGAAAC GCCTGGTCTCGTTCCGCCGTTGTGTGGTCACGGTCCGCCGCGTGCAGGTG ACAGGGATGGTGGCGTTGTTGATGCACTACCAGATGCTCTACGGTTCGAT CATGTACTTCTTCTCGTTCTTCAACAACCGAATGTCAGGCGGCACTCCAA CTGCATACGAGGCAGTGTTAGCTCGGAATATCGTTGGGGGAGGGGGTAAA CGCGCGACATGGACACACTTCTTTCTCCGTCTATGACGGTAGCTTGTATC ACTGTCCACGCTGCCTTCGTATTGGGTATAACCCAAGAAGTCCCCGAAGA GAAGTGGAACTCCCACACATTTCTTGGAAGATTATAATAGTCTTCAACGC CCGCCATTTTTTTTATTTTTTTTCAATTCCTCTGTTGCGCCATGAAAAGC TTCGGGAAAACAACTCCTTGCAGCACAGGCCGCGCTCCTCGGGCAGCATA TCTATATACTTATCTATCTTATCTCTATCCACAGTATCACATTACGTTAT ACTGCTTCCGCCCCCCGTCCCCGCATTTCGTTCGCCTTGTCCATAATATC AGCGATAAGGCCATCAGCACGAATGAAGTGGTCATCGCCGTGCTGTGCCC GACTCTGGTGTGGGTGGTATTCCCTCTGCTGGGGATGTATCAAGGCTATA GGGTGAGCAGACCAACGACCAATCGTGTGGAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig49649:284..1518+

>mRNA_H-elongata_contig49649.12168.1 ID=mRNA_H-elongata_contig49649.12168.1|Name=mRNA_H-elongata_contig49649.12168.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig49649:284..1518+ (Himanthalia elongata Himel1 dioecious)
CGACAGACCAGATCGACGGTAATCGTCGTATTCCGCTCCATGCGAGTGAG
AGACATCCTGAATCCTTCCTTCTGGAGTGACATCTGGATAGACTATTCAC
GCTTCGACCCCTCCTACGCGGACTCTCGATCGGCTGGCTACAACATCGAC
GTCTGCAACGGCCACACAACGCTGCTGCCCACCCTGTTCTTGATGATGTC
GATGGTCCAGCCGCTTGTTGGGGCGAAGCGACAGACCAGATCGACGGTAA
TCGTCGTATTCCGCTCCATGCGAGTGAGAGACATCCTGAATCCTTCCTTC
TGGAGTGACATCTGGATAGACTATTCACGCTTCGACCCCTCCTACGCGGA
CTCTCGATCGGCTGGCTACAACATCGACGTCTGCAACGGCCACACAACGC
TGCTGCCCACCCTGTTCTTGATGATGTCGATGGTCCAGCCGCTTGTTGGG
GCGAAGGTGACAGGGATGGTGGCGTTGTTGATGCACTACCAGATGCTCTA
CGGTTCGATCATGTACTTCTTCTCGTTCTTCAACAACCGAATGTGACAGG
GATGGTGGCGTTGTTGATGCACTACCAGATGCTCTACGGTTCGATCATGT
ACTTCTTCTCGTTCTTCAACAACCGAATCGATAAGGCCATCAGCACGAAT
GAAGTGGTCATCGCCGTGCTGTGCCCGACTCTGGTGTGGGTGGTATTCCC
TCTGCTGGGGATGTATCAAGGCTATAGGGTGAGCAGACCAACGACCAATC
GTGTGGAATAGCGATAAGGCCATCAGCACGAATGAAGTGGTCATCGCCGT
GCTGTGCCCGACTCTGGTGTGGGTGGTATTCCCTCTGCTGGGGATGTATC
AAGGCTATAGGGTGAGCAGACCAACGACCAATCGTGTGGAATAG
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