mRNA_H-elongata_contig49649.12168.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: D8LQR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR6_ECTSI) HSP 1 Score: 142 bits (359), Expect = 1.950e-40 Identity = 69/105 (65.71%), Postives = 85/105 (80.95%), Query Frame = 1
Query: 4 QTRSTVIVVFRSMRVRDILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFFNNRID 318
QT+S IVVFR MR +IL+PSFW++IWIDY+RFD +Y SAG+NIDV NGHTTLLP+LFL+ SMV+PL K+TGMV LL HYQMLY S++YF++FFN ID
Sbjct: 76 QTKSVTIVVFRWMRFSEILSPSFWANIWIDYARFDDAYVQPVSAGFNIDVGNGHTTLLPSLFLLASMVRPLADPKITGMVGLLAHYQMLYLSLLYFYAFFNTAID 180
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A0L0FZ44_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FZ44_9EUKA) HSP 1 Score: 118 bits (295), Expect = 2.600e-30 Identity = 59/140 (42.14%), Postives = 88/140 (62.86%), Query Frame = 1
Query: 4 QTRSTVIVVFRSMRVRDILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFFN--NRIDKAISTNEVVIAVLCPTLVWVVFPLLGMYQGYRV 417
Q +S + + + + P WS IWIDY +DPSYAD + G+NIDV NGH+TLLP+L + +S++ P+ AKVTGM+ +L+ YQ YG+++YFFS+ N + A S VV+ C +W+VFP+LG Y ++
Sbjct: 75 QPQSEDFIFVQDVPITKAFCPDLWSQIWIDYGYYDPSYADKTTFGFNIDVGNGHSTLLPSLLMAVSIISPIFSAKVTGMLGMLLFYQTWYGTVVYFFSYVNCGRYLKSAWSDIGVVLFANC---IWIVFPVLGFYCSVKL 211
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A7S2WL51_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WL51_9STRA) HSP 1 Score: 115 bits (288), Expect = 3.900e-29 Identity = 60/132 (45.45%), Postives = 85/132 (64.39%), Query Frame = 1
Query: 19 VIVVFRSMRVR--DILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFFNNRIDKAISTNEVVIAVLCPTLVWVVFPLLGMYQG 408
V++ F ++ V ++ + W+++W YS +DPSYAD RS G+ +DV NG++TL+PTLF + SM QPL A+ TG+V LL YQ YG+++YF SF N+ K EV+I V +W VFPLLGMY
Sbjct: 87 VVLQFFTLDVHLGNLFDSRLWAEVWASYSVYDPSYADRRSFGFFVDVGNGYSTLVPTLFFLYSMTQPLCSARTTGIVGLLSFYQEFYGTVIYFLSFVMNKRYKNRPLYEVLIFVCFTNGLWFVFPLLGMYAS 218
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A0S8ETM9_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium SG8_38_1 TaxID=1703408 RepID=A0A0S8ETM9_9DELT) HSP 1 Score: 110 bits (274), Expect = 4.800e-27 Identity = 57/139 (41.01%), Postives = 82/139 (58.99%), Query Frame = 1
Query: 1 RQTRSTVIVVFRSMRVRDILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFFNNRIDKAISTNEVVIAVLCPTLVWVVFPLLGMYQGYRV 417
R+ + V R + + I + W+ IW YS FDP Y+D RS GYNIDV NG TT+LP M LV +V G+V +++ +QM YG+ +YFF FFNN + S +V++ V L+W++FPLLG+Y R+
Sbjct: 85 REMAAVAQVFSRPIPILRIFSFREWTRIWSTYSLFDPGYSDRRSFGYNIDVGNGFTTILPATLFAFGMTFNLVPPRVLGIVGIIIFWQMFYGTAVYFFQFFNNDRHRGHSVRDVLLFVGVSNLLWLIFPLLGLYTSVRL 223
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A661N1Z4_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661N1Z4_9DELT) HSP 1 Score: 108 bits (270), Expect = 1.990e-26 Identity = 56/136 (41.18%), Postives = 82/136 (60.29%), Query Frame = 1
Query: 34 RSMRVRDILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFFNNRIDKAISTNEVVIAVLCPTLVWVVFPLLGMYQGYRVSRPTTNRV 441
R + + ++L+ S W+ IW YS FDP Y+D RS GYNIDV NG TTL+P L M + A+V G++ +++ +QM YG+ +YFF FFNN K S ++V+ V L+W VFPL G++ + + RV
Sbjct: 98 RPIPLLNVLSFSQWTTIWSGYSLFDPGYSDRRSFGYNIDVGNGFTTLIPALVFASGMTFEWMPARVLGIIGIILFWQMFYGTAVYFFQFFNNDRHKGHSLRDLVVFVGITNLMWFVFPLWGLWASVELILDGSYRV 233
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A7S4NL81_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NL81_9EUKA) HSP 1 Score: 108 bits (270), Expect = 2.330e-26 Identity = 54/132 (40.91%), Postives = 86/132 (65.15%), Query Frame = 1
Query: 22 IVVFRSMRVRDILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFF---NNRIDKAISTNEVVIAVLCPTLVWVVFPLLGMYQG 408
IV+F+ + + + FW+ +WIDY R+D +YAD + GYNIDV NGH++L+P++ ++ + A++ GM+ LL +YQMLYG+++Y+FS+F + R N + I VL ++WV+FPLLGMY
Sbjct: 99 IVLFKDISLGQLFCTDFWAYVWIDYCRYDSAYADKTTFGYNIDVGNGHSSLIPSILMITFCYYEYLDARIAGMIGLLSNYQMLYGALVYYFSYFCGASARTHLQDRFNGLGI-VLFANILWVIFPLLGMYAS 229
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A7Y3BND5_9DELT (Uncharacterized protein n=3 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A7Y3BND5_9DELT) HSP 1 Score: 103 bits (258), Expect = 1.160e-24 Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = 1
Query: 1 RQTRSTVIVVFRSMRVRDILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFFNNRIDKAISTNEVVIAVLCPTLVWVVFPLLGM 399
R+ + + R + + +L+ W+ IW YS FDP Y+D RS GYNIDV NG TT++P M L+ A+ G++ L+M +QM YG+ +YFF FFNN K S ++++ V L+W VFP+LG+
Sbjct: 85 REMQRIAEIFARPIPLLQVLSFRQWTTIWSSYSLFDPGYSDRRSFGYNIDVGNGFTTIIPATLFAFGMTFELMPARWLGILGLIMFWQMFYGTAVYFFQFFNNGRHKGHSVKDLLLFVGITNLMWFVFPILGL 217
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A6N8UJI7_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N8UJI7_9GAMM) HSP 1 Score: 96.7 bits (239), Expect = 1.310e-22 Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 1
Query: 55 ILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFFNNRIDKAISTNEVVIAVLCPTLVWVVFPLLGMYQGYRV 417
+L+PS W+D+W YS++DPS+AD R+ G+N+D NG +LLPTL L S + +V G++ L M +Q +Y + +Y+ SFF IS ++ + VL WV+ PLLG++ R+
Sbjct: 28 VLSPSLWADVWATYSQYDPSFADRRTYGFNVDTANGFLSLLPTLLLYASFTVYFLPPRVAGILGLAMFWQWVYMTSVYWISFFVANRQVEISRRDLYLYVLGTNAPWVLCPLLGLFVSIRI 148
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A6N9B307_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N9B307_9GAMM) HSP 1 Score: 96.7 bits (239), Expect = 1.020e-21 Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 1
Query: 55 ILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSFFNNRIDKAISTNEVVIAVLCPTLVWVVFPLLGMYQGYRV 417
+L+PS W+D+W YS++DPS+AD R+ G+N+D NG +LLPTL L S + +V G++ L M +Q +Y + +Y+ SFF IS ++ + VL WV+ PLLG++ R+
Sbjct: 117 VLSPSLWADVWATYSQYDPSFADRRTYGFNVDTANGFLSLLPTLLLYASFTVYFLPPRVAGILGLAMFWQWVYMTSVYWISFFVANRQVEISRRDLYLYVLGTNAPWVLCPLLGLFVSIRI 237
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Match: A0A7S0EDX6_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EDX6_9EUKA) HSP 1 Score: 93.6 bits (231), Expect = 1.100e-20 Identity = 48/134 (35.82%), Postives = 81/134 (60.45%), Query Frame = 1
Query: 22 IVVFRSMRVRDILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDVCNGHTTLLPTLFLMMSMVQPLVGAKVTGMVALLMHYQMLYGSIMYFFSF-FNNRIDKAISTNEVVIAVLCPTL-VWVVFPLLGMYQGYRV 417
I +F + I + +W+ +W YS DPSY+D+ + G+ +DV NG TTLLPTL M P++ A++ G + + M++Q LYG+++YFF + FN R D+ S V+ ++ P +W+ P LG++ Y++
Sbjct: 85 IFLFERASLSQIFSLRYWAVMWSTYSVLDPSYSDTTTFGFCVDVGNGVTTLLPTLLWAAGMTWPILSARLMGAMGIAMYWQELYGTVIYFFQYMFNRRFDR--SPRAHVLGIVVPANGIWIACPALGIWASYQL 216 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49649.12168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49649.12168.1 >prot_H-elongata_contig49649.12168.1 ID=prot_H-elongata_contig49649.12168.1|Name=mRNA_H-elongata_contig49649.12168.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp RQTRSTVIVVFRSMRVRDILNPSFWSDIWIDYSRFDPSYADSRSAGYNIDback to top mRNA from alignment at H-elongata_contig49649:284..1518+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49649.12168.1 ID=mRNA_H-elongata_contig49649.12168.1|Name=mRNA_H-elongata_contig49649.12168.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1235bp|location=Sequence derived from alignment at H-elongata_contig49649:284..1518+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49649:284..1518+ >mRNA_H-elongata_contig49649.12168.1 ID=mRNA_H-elongata_contig49649.12168.1|Name=mRNA_H-elongata_contig49649.12168.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig49649:284..1518+ (Himanthalia elongata Himel1 dioecious)back to top |