mRNA_H-elongata_contig11531.1216.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11531.1216.1 vs. uniprot
Match: D7FMH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH0_ECTSI) HSP 1 Score: 517 bits (1332), Expect = 3.600e-161 Identity = 425/1054 (40.32%), Postives = 535/1054 (50.76%), Query Frame = 1
Query: 28 STGRGILSTGDILIEVNGRPVAGPAARRAGILSFQDAIEAVAAAAKTE----------EGGNGRGSRNFKFRRVGRSSPPSI---------PLDPT------------SFALLPSKTLLTGESGSGLSGEDATDEKRGSGNSAEASDRSNRSGFGVG------LQLKDSGRSM--------DSTVRVSGTTRGGSGWKPILSSRSTTSLGTS---DG----SSGESRKAGRRKK------------------------KARVAGKNFGVVLTTLSAVERIKKEARRAEASLKPWVCPRQCLIQQVLENSDLLRPVVIQLTNLSYWYQQRRLLGGSRHMHRKTDFKSTTKRWEASIYILRGRPSDGKLIPILTPSGIPTGTVFRSEGQALAQASKSAQERDANPCACRGSKPKGITPSTMLQTHIAILVVSEIFKGLCNADRLAIVFTTLFDGLVAEADDFSATP----NAAAKPQRSGLSRPPS----------------PERGEGRERETKTIHAADQ---SRTSVNSGSQMSRRWNKNEAESLPN---------------RSGA--------GGRTTNSSTDVFDTGTADAAA------------------EGGRNESVGTYPGRVVRGGVKASFVGANVRALPVWGGLAPIAGTSLLIECRTPAQWQPKKFQPTGQ-----------------------------ELWGPARSGHTTLANDPRVNDASISKSLELIVAESKVLRETAPKFEHFDRFAQEANGGSPTRQASRKHLRPANDGTNSSRRLLRHNAQDDESFGVKSDRGGGGRTLPHFFHGLGIHTRRLLLKLHAENHSRLLA---RKPSPNSSTVALRGGIVNTQSRP---------STLSPGSLRSIK-----------PPQSTGLIPHSIEDALSAGRISARSGSLSAAPTRMRDAASAFAVFEPPPDVDAAVLDQHSVLLARLTEAVTRIQRIRRIGAFPRAARRMRRRQRAALFVERVFRGHLGRRYAAIWKVVAYLASTRISAEWRRFETRRTFLVIRARSRAGATCLQ 2613
+ GR IL GDIL+EVNG PVAG AAR AGI+SF+DA+ VAAA + + R KFRR GR PS P DP+ S S +T + +GLS A + N A++S+ LQ+K G+ D S G G P+ SSRS S +S DG SS SR + R K K R AG G +T S ERIK EARR EA L+P VCPRQ L++ +LE S+ L+P+ ++LTNLSYWYQQRRLLGG+RHMHR F TKRWEAS+Y+L RPSDGKL+PILTP GT ++GQALA A+KSA+ERDANP A RG KP G+T TMLQTHI+ILVVS+ F GL +ADRLA+VFTTL + L A A + P NA + P S + P S P+ EG R+ AD +R V+ S +K A P+ G+ GGR S+ GTA ++ +G R + RV+RG VKASFVG NV LPVWG L IAG+SLL++CRTPAQW+ + F PT Q ELWGPARSGH TLAN+PRV + ++ ++E I+AESK LRE APKFEHFDRF E+NG + + + + + ++ + N K+ GRT PHFFHGLG + R+L ++L+ EN SRLLA R+ + + VA G ++ P +T GS SI PP+ G P S+ + +A +R AA AFA PPPD+DA VLD++ VLL RL EA TRIQR RR+G PRAARR+ RRQRA L V+RVFRGHLGR YA++WKVVA LA+TR+SA WRRF T+R FL RAR+RAGA LQ
Sbjct: 217 AAGREILRPGDILVEVNGMPVAGDAARDAGIVSFEDAVGVVAAATAARSPTPEAHGQLDAAARQRPRVLKFRREGRGQRPSSASVTLLLPSPRDPSKGGWVNGIPGGGSAGSRSSSGTVTEQDTTGLSSRSAHGLESKISNPADSSEXXXXXXXXXXXXLHPVLQVKGVGQVPHMAAGDPGDKNTAGSWIGEKGMGEIPLASSRSRASDASSVDMDGLSALSSLRSRSSVRSKGSESSFNSRATSKTGGVPRSRKRGGKERQAGGRSGAFQST-STAERIKAEARRGEALLEPLVCPRQQLLKNILETSETLQPLAVRLTNLSYWYQQRRLLGGARHMHRGAVFDPRTKRWEASVYMLGDRPSDGKLVPILTPIKS-VGTTISTKGQALAIAAKSAKERDANPGAVRGPKPPGMTQLTMLQTHISILVVSDAFTGLSHADRLALVFTTLHNELAASARPPPSLPDNSTNAFSSPLPSSNTPPSSLLSPATKAKKTATALTPDSVEGGRRDPSVADEADDRSNARRGVSVQSPGYHDESKRAAAGRPHSIRVVAAGGERQVGEEKGSXXXXXXXXGGRNDVSNGGRLPVGTASPSSVHPIIPIGDINSQEERRKDGDRRQR---RRHRVIRGNVKASFVGQNVEGLPVWGALDAIAGSSLLVDCRTPAQWRAETFPPTQQDRCLVHRQGPGALYVHSRSHINEKEERFEELWGPARSGHRTLANNPRVKEGAVRSTMERIIAESKALREAAPKFEHFDRFG-ESNGDADQTKGNPPPPKKSGGESHGAGHQPNTNPSVATPAATKA-----GRTHPHFFHGLGPNARKLFMELYTENRSRLLAPISRRSADVAGPVASSGRHLSAAPAPPDGTSLPSPTTARNGSQLSISRQQQQQLHEKTPPREEGKSPRSVSGSFAAXXXXXXXXXXX---ENVRHAAGAFAASGPPPDLDAGVLDRYGVLLGRLVEAATRIQRERRLGGLPRAARRLWRRQRAVLAVQRVFRGHLGRSYASMWKVVAVLAATRLSAGWRRFSTQRKFLAFRARARAGAIGLQ 1256
BLAST of mRNA_H-elongata_contig11531.1216.1 vs. uniprot
Match: A0A6H5KC52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC52_9PHAE) HSP 1 Score: 444 bits (1143), Expect = 5.350e-134 Identity = 397/1013 (39.19%), Postives = 502/1013 (49.56%), Query Frame = 1
Query: 28 STGRGILSTGDILIEVNGRPVAGPAARRAGILSFQDAIEAVAAAAKT-----EEGGNGRGSRN------FKFRRVGRSSPPSIPLDPTSFALLPSKTLLT-GESGSGLSGEDATDEKRGSGNSAE--ASDRSNRSGFGVGL---------------------------QLKDSGRSMDSTVRVSGTTRGGSGWK--------PILSSRSTTSLGTS---DGSSGESRKAGRRKKKARVAGKNFGVVLTTLSA-VERIKKEA-RRAEASLKPWVCPRQCLIQQVLENSDLLRPVVIQLTNLSYWYQQRRLLGGSRHMHRKTDFKSTTKRWEASIYILRGRPSDGKLIPILTPSGIPTGTVFRSEGQALAQASKSAQERDANPCACRGSKPKGITPSTMLQTHIAILVVSEIFKGLCNADRLAIVFTTLFDGLVAEADD-----------------FSATPNAAAKPQRSGLSRPPSPERGEGRERETKTIHAADQSRTSVNSGSQMSRRWNKNEAESLPNRSGAGGR------TTNSSTDVFDTGTADAAA------------EGGRNE-------SVGT------YP------------------------GRVVRGGVKASFVGANVRALPVWGGLAPIAGTSLLIECRTPAQWQPKKFQPTGQELWGPARSGHTTLANDPRVNDASISKSLELIVAESKVLRETAPKFEHFDRFAQEANGGSPTRQASRKHLRPANDGTNSSRRLLRHNAQDDESFGVKSDRGGGGRTLPHFFHGLGIHTRRLLLKLHAENHSRLLA---RKPSPNSSTVALRGGIV---------NTQSRPSTLSPGSLRSIKPPQSTGLIPHSIEDALSAGRI-SARSGSLSAAPTRMRDAASA-----------FAVFEPPPDVDAAVLDQHSVLLARLTEAVTRIQRIRRIGAFPRAARRMRRRQRAALFVERVFRGHLGRRYAAIWKVVAYLASTRISAEWRRFETRRTFLVIRARSRAGATCLQV 2616
+ GR IL GDIL+EVNG PVAG AAR AGI+SF+DA+ VAAA E G R + KFRR GR PS D LLPS + G +G+ G + + SG E +D S+RS G+ Q+K G+ G GW P+ SSRS S +S DG S S R +++ + +F T+ + V R +K + +A + V +++ + YQQRRLLGG+RHMHR F TKRWEAS+Y+L RPSDGKL+PILTP GT ++GQALA A+KSA+ERDANP A RG KP +T TML+THI+ILVVS+ F GL +ADRLA+VFTTL + L A A FS TP ++ PQ + + P+ + E AD + N+ +S + + ES NR+GAG T S V G EGGRN+ VGT +P RV+RG VKASFVG NV LPVWG L IAG+SLL++CRTPAQW+ + + PT QELWG ARSGH TLAN PRV + + ++E I+AESKVLRE APKFEHFDRF E+NG + Q P G S + N + + GRT PHFFHGLG + R+L ++L+ EN SRLLA R+ + + VA G + + P+T GS SI Q ++ S RS S S A FA PPPD+DA VLD++ VLL RL EA TRIQR+RR+G PRAARR+RRRQRA L V+RVFRGHLGRRYA++WKVVA LA+TR+SA WRRF +R FL RAR+RAGA LQV
Sbjct: 299 AAGREILRPGDILVEVNGMPVAGAAARDAGIVSFEDAVGVVAAATAARSPAPEAHGQQRDAAARQRPLVLKFRREGRGQRPSSASDTL---LLPSPRYPSKGGWVNGIPGGGSAGSRSSSGTVTEQDTTDSSSRSARGLETKICDPAXXXXXXXXXXXXXXXXXXXXPQVKGVGQVPHMAAGDPGDKNTPGGWIGEMGRGEIPLASSRSRASGASSVDMDGLSALSSLRSRSSARSKGSESSFNSRATSKTGGVPRSRKRGGKERQAGGRSGVFQSTSTAERIKAEAR---------------YQQRRLLGGARHMHRGAVFDPRTKRWEASVYMLGDRPSDGKLVPILTPIKS-VGTTVLTKGQALALAAKSAKERDANPGAVRGPKPPMMTQLTMLETHISILVVSDAFTGLSHADRLALVFTTLHNELAASAHPPPSLPDVRTNAFSSPLPFSNTPPSSLLPQATKAKKTPTALAPDAVEEGRGDHSVADGTDGRPNARRGVSVQSPGHHDES--NRAGAGRPHGVAVGTGEKSERVVAAGXXXXXXXXXXXXXXXXIEEGGRNDVSNGRGLPVGTASLSSVHPVIPTGGINSQEERGKDGDQRQRRRHRVIRGNVKASFVGPNVEGLPVWGALDAIAGSSLLVDCRTPAQWRAETYPPTEQELWGAARSGHRTLANHPRVKEGIVKSTMERIIAESKVLREAAPKFEHFDRFG-ESNGDAD--QTKGNPPPPTTSGGQSDGAGHQPNTNPAVAAPAATK---AGRTHPHFFHGLGPNARKLFMELYTENRSRLLAPISRRSADVAGPVASSGRHLPVAPAPPDCTSLPSPTTARNGSQLSISWQQXXXXXXXXXXXXXXREKVKSPRSVSGSFAXXXXXXXXXXXXXXXXXXXXXFAASGPPPDLDAGVLDRYGVLLGRLVEAATRIQRVRRLGGLPRAARRLRRRQRAVLAVQRVFRGHLGRRYASMWKVVAVLAATRLSAGWRRFSAQRKFLAFRARARAGAIGLQV 1284 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11531.1216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11531.1216.1 >prot_H-elongata_contig11531.1216.1 ID=prot_H-elongata_contig11531.1216.1|Name=mRNA_H-elongata_contig11531.1216.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=874bp MEFGSTTAHSTGRGILSTGDILIEVNGRPVAGPAARRAGILSFQDAIEAVback to top mRNA from alignment at H-elongata_contig11531:1336..6132+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11531.1216.1 ID=mRNA_H-elongata_contig11531.1216.1|Name=mRNA_H-elongata_contig11531.1216.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4797bp|location=Sequence derived from alignment at H-elongata_contig11531:1336..6132+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11531:1336..6132+ >mRNA_H-elongata_contig11531.1216.1 ID=mRNA_H-elongata_contig11531.1216.1|Name=mRNA_H-elongata_contig11531.1216.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5244bp|location=Sequence derived from alignment at H-elongata_contig11531:1336..6132+ (Himanthalia elongata Himel1 dioecious)back to top |