prot_H-elongata_contig115233.1212.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig115233.1212.1
Unique Nameprot_H-elongata_contig115233.1212.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length53
Homology
BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: D7G3D1_ECTSI (Rad21_Rec8_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3D1_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 9.770e-18
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 0
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 45
            NIL+PTVPLALR+SGHLLLGLVRIYSRKVKYLMSDASEALVKIQM
Sbjct:   43 NILQPTVPLALRMSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 87          
BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: W7TL72_9STRA (Mitotic cohesin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL72_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.210e-15
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 45
            +I+ PTVPLALRVSGHLLLG+VRIYSRKVKYLM D S+AL KI+M
Sbjct:   43 SIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKM 87          
BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: A0A7S3YM80_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YM80_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 1.890e-15
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 45
            +I+ PTVPLALRVSGHLLLGL RIYSRKVKYLM+D SEALVKI+M
Sbjct:   45 SIVNPTVPLALRVSGHLLLGLTRIYSRKVKYLMTDCSEALVKIKM 89          
BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: B8C9U8_THAPS (Rad21_Rec8_N domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9U8_THAPS)

HSP 1 Score: 71.6 bits (174), Expect = 4.410e-15
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 45
            +I+ PTVPLALRVSGHLLLG+VRIYSRKV+YLM D  EA+VKI+M
Sbjct:   44 SIVNPTVPLALRVSGHLLLGVVRIYSRKVRYLMHDCHEAMVKIKM 88          
BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: A0A7S2XQ04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQ04_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.740e-15
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 45
            +I+ PTVPLALRVSGHLLLG+VRIYSRKVKYLM D  EA+VKI+M
Sbjct:   44 SIVNPTVPLALRVSGHLLLGVVRIYSRKVKYLMHDCHEAMVKIKM 88          
BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: K0RNW5_THAOC (Rad21_Rec8_N domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RNW5_THAOC)

HSP 1 Score: 73.6 bits (179), Expect = 2.220e-14
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 0
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 45
            +I+ PTVPLALRVSGHLLLG+VRIYSRKVKYLM+D  EA+VKI+M
Sbjct:   44 SIVNPTVPLALRVSGHLLLGVVRIYSRKVKYLMTDCHEAMVKIKM 88          
BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: A0A6U6IWB3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6IWB3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.070e-14
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 0
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQMV---GLQG 50
            +I+ P VPLALRVSGHLLLG+VRIYSRKV+YLM D  EA+VKI+M    G++G
Sbjct:   44 SIVNPAVPLALRVSGHLLLGVVRIYSRKVRYLMHDCHEAMVKIKMAFRPGVEG 96          
BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: A0A421EYK2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EYK2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.060e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 45
            NI+ P VPLALRVSGHLLLG+VRIYSRKVKYL SD SEALVKI++
Sbjct:   62 NIVNPQVPLALRVSGHLLLGVVRIYSRKVKYLYSDCSEALVKIKL 106          
BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: A0A421GXK5_9STRA (Rad21_Rec8_N domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GXK5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.080e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 45
            NI+ P VPLALRVSGHLLLG+VRIYSRKVKYL SD SEALVKI++
Sbjct:   62 NIVNPQVPLALRVSGHLLLGVVRIYSRKVKYLYSDCSEALVKIKL 106          
BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: A0A4D9CUA7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUA7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 8.290e-14
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 45
            +I+ PTVPLALRVSGHLLLG+VRIYSRKVKYLM D S+AL KI+M
Sbjct:   43 SIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKM 87          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3D1_ECTSI9.770e-1895.56Rad21_Rec8_N domain-containing protein n=2 Tax=Ect... [more]
W7TL72_9STRA1.210e-1580.00Mitotic cohesin n=1 Tax=Nannochloropsis gaditana T... [more]
A0A7S3YM80_HETAK1.890e-1584.44Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
B8C9U8_THAPS4.410e-1577.78Rad21_Rec8_N domain-containing protein (Fragment) ... [more]
A0A7S2XQ04_9STRA4.740e-1580.00Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
K0RNW5_THAOC2.220e-1480.00Rad21_Rec8_N domain-containing protein n=1 Tax=Tha... [more]
A0A6U6IWB3_9STRA4.070e-1467.92Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A421EYK2_9STRA6.060e-1482.22Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A421GXK5_9STRA6.080e-1482.22Rad21_Rec8_N domain-containing protein n=3 Tax=Phy... [more]
A0A4D9CUA7_9STRA8.290e-1480.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006910Rad21/Rec8-like protein, N-terminalPFAMPF04825Rad21_Rec8_Ncoord: 1..45
e-value: 3.7E-16
score: 59.2
IPR039781Rad21/Rec8-like proteinPANTHERPTHR12585SCC1 / RAD21 FAMILY MEMBERcoord: 2..45
NoneNo IPR availablePANTHERPTHR12585:SF29FI11703Pcoord: 2..45
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 26..52
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..25

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115233contigH-elongata_contig115233:41..199 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115233.1212.1mRNA_H-elongata_contig115233.1212.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig115233 41..199 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig115233.1212.1 ID=prot_H-elongata_contig115233.1212.1|Name=mRNA_H-elongata_contig115233.1212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQMVGLQG
FR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006910Rad21_Rec8_N
IPR039781Rad21/Rec8-like