mRNA_H-elongata_contig49279.12113.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49279.12113.1
Unique NamemRNA_H-elongata_contig49279.12113.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig49279.12113.1 vs. uniprot
Match: F0Y3N7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3N7_AURAN)

HSP 1 Score: 67.4 bits (163), Expect = 1.370e-12
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    7 ACVADCSNALELDPGRVKAYFRRALARELLGEDADALRDAKRTLELDPGNKDAVKAARRIKDKV 198
            ACVADC  AL LD  + KAY+RRA AR+ LGE ADA RD K  + L+P N++AV  AR +K+++
Sbjct:   57 ACVADCDGALALDGSKAKAYYRRARARDGLGELADAFRDLKACVRLEPANREAVALARSVKERL 120          
BLAST of mRNA_H-elongata_contig49279.12113.1 vs. uniprot
Match: D7FIG6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIG6_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.370e-12
Identity = 42/69 (60.87%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    1 AEACVADCSNALELDPGRVKAYFRRALARELLGEDADALRDAKRTLELDPGNKDAVKAARRIKDKVARA 207
            AEACV+DC+ ALE DPGRVKAYFRRALARE L                   NK+AV+AARRIKDKVA+A
Sbjct:   73 AEACVSDCTRALEDDPGRVKAYFRRALAREKLXXXXXXXXXXXXXXXXXXXNKEAVRAARRIKDKVAQA 141          
BLAST of mRNA_H-elongata_contig49279.12113.1 vs. uniprot
Match: A0A7S0P6I6_9EUKA (Protein unc-45 homolog B (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P6I6_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 4.740e-10
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    7 ACVADCSNALELDPGRVKAYFRRALARELLGEDADALRDAKRTLELDPGNKDAVKAARRIK 189
            AC +DC+ A+ L P  VKA++RR +ARE LG+ ADA RDA+  L +DP NK+A   A R+K
Sbjct:   28 ACDSDCTLAIGLHPAYVKAWYRRGIAREALGKHADAFRDAREALRIDPSNKEAAALAARLK 88          
BLAST of mRNA_H-elongata_contig49279.12113.1 vs. uniprot
Match: A0A8J2X189_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X189_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.670e-9
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   10 CVADCSNALELDPGRVKAYFRRALARELLGEDADALRDAKRTLELDPGNKDAVKAARRIKDKV 198
            C+ DC+ AL+LD  R K Y+RRA ARE      DA +D K  ++L+P NK AV AARR+K+K+
Sbjct:  116 CIKDCNEALKLDASRAKCYYRRAAAREQQDALEDAFKDLKICVQLEPTNKTAVNAARRVKEKL 178          
BLAST of mRNA_H-elongata_contig49279.12113.1 vs. uniprot
Match: A0A8J1W3G9_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1W3G9_9DINO)

HSP 1 Score: 58.5 bits (140), Expect = 2.730e-8
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 AEACVADCSNALELDPGRVKAYFRRALARELLGEDADALRDAKRTLELDPGNKDAVKAARRIKD 192
            A + V  C+  LE +P   KA +RRALA E+LGE+A+A++DAK  L  DP NKD +  A R+KD
Sbjct:  358 ATSAVTTCNELLESEPTNQKAIYRRALANEILGEEAEAMKDAKAILADDPKNKDFLVLAHRLKD 421          
BLAST of mRNA_H-elongata_contig49279.12113.1 vs. uniprot
Match: UPI001425671C (sperm-associated antigen 1-like isoform X1 n=2 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425671C)

HSP 1 Score: 55.8 bits (133), Expect = 2.490e-7
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   13 VADCSNALELDPGRVKAYFRRALARELLGEDADALRDAKRTLELDPGNKDAVKAARRIKD 192
            V+DCS AL+LD   VKA +RRA +R++LGE  +AL+D K  L ++P NK A+K    +K+
Sbjct:  745 VSDCSTALKLDDKNVKALYRRAQSRKMLGEYKEALKDLKTLLNIEPTNKTAIKDLETVKE 804          
BLAST of mRNA_H-elongata_contig49279.12113.1 vs. uniprot
Match: A0A2T3AL86_9PEZI (Serine/threonine-protein phosphatase n=2 Tax=Sordariomycetidae TaxID=222544 RepID=A0A2T3AL86_9PEZI)

HSP 1 Score: 54.3 bits (129), Expect = 8.460e-7
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   13 VADCSNALELDPGRVKAYFRRALARELLGEDADALRDAKRTLELDPGNKDA 165
            +AD + A+ELDPG VKAY+RRA+A   +    DAL+D K   ++DP NKDA
Sbjct:   65 IADATKAIELDPGFVKAYYRRAIAHAAILHPKDALQDFKSCTKIDPSNKDA 115          
BLAST of mRNA_H-elongata_contig49279.12113.1 vs. uniprot
Match: A0A4S8IHI6_MUSBA (Amidase domain-containing protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8IHI6_MUSBA)

HSP 1 Score: 53.9 bits (128), Expect = 1.070e-6
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    4 EACVADCSNALELDPGRVKAYFRRALARELLGEDADALRDAKRTLELDPGNKDAVKAARRIK 189
            E   ADCS AL LD   VKAY RR  ARE+L    +AL D K  L L+P NKDAV A +R++
Sbjct:  244 EKAEADCSQALLLDKKNVKAYLRRGTAREMLLCYKEALEDFKHALVLEPQNKDAVDAEKRLR 305          
BLAST of mRNA_H-elongata_contig49279.12113.1 vs. uniprot
Match: A0A423XHA6_9PEZI (Serine/threonine-protein phosphatase n=1 Tax=Cytospora leucostoma TaxID=1230097 RepID=A0A423XHA6_9PEZI)

HSP 1 Score: 53.9 bits (128), Expect = 1.160e-6
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   13 VADCSNALELDPGRVKAYFRRALARELLGEDADALRDAKRTLELDPGNKDA 165
            + D + A+EL+PG VKAY+RRALA   +    DAL+D K   ++DPGNKDA
Sbjct:   80 IQDATKAIELNPGFVKAYYRRALAHAAVLRPKDALKDFKSCTQIDPGNKDA 130          
BLAST of mRNA_H-elongata_contig49279.12113.1 vs. uniprot
Match: UPI001F0541A5 (RNA polymerase II-associated protein 3 n=1 Tax=Lucilia cuprina TaxID=7375 RepID=UPI001F0541A5)

HSP 1 Score: 53.5 bits (127), Expect = 1.540e-6
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   10 CVADCSNALELDPGRVKAYFRRALARELLGEDADALRDAKRTLELDPGNKDAVKAARRIKDKV 198
            C+ DC  A+++D   VKAY+RR +A E LG + DAL+D    L ++P N +A ++  RI +++
Sbjct:   41 CIEDCERAIDIDRLAVKAYYRRMMANESLGNNMDALKDCTTVLMIEPKNSEAKRSLERINERL 103          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49279.12113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0Y3N7_AURAN1.370e-1254.69Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
D7FIG6_ECTSI2.370e-1260.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0P6I6_9EUKA4.740e-1052.46Protein unc-45 homolog B (Fragment) n=1 Tax=Calcid... [more]
A0A8J2X189_9STRA1.670e-950.79Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J1W3G9_9DINO2.730e-850.00Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
UPI001425671C2.490e-748.33sperm-associated antigen 1-like isoform X1 n=2 Tax... [more]
A0A2T3AL86_9PEZI8.460e-752.94Serine/threonine-protein phosphatase n=2 Tax=Sorda... [more]
A0A4S8IHI6_MUSBA1.070e-653.23Amidase domain-containing protein n=1 Tax=Musa bal... [more]
A0A423XHA6_9PEZI1.160e-652.94Serine/threonine-protein phosphatase n=1 Tax=Cytos... [more]
UPI001F0541A51.540e-639.68RNA polymerase II-associated protein 3 n=1 Tax=Luc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49279contigH-elongata_contig49279:2992..3787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue7.5e-11
Seed eggNOG ortholog2880.D7FIG6
KEGG koko:K19870,ko:K21991
EggNOG free text desc.protein binding, bridging
EggNOG OGsKOG4151@1,KOG4151@2759,KOG4234@1,KOG4234@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-28_000200.1
Exons2
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930810.6491911-CDS-H-elongata_contig49279:2991..31321622930810.6491911-CDS-H-elongata_contig49279:2991..3132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49279 2992..3132 +
1691679580.3177807-CDS-H-elongata_contig49279:2991..31321691679580.3177807-CDS-H-elongata_contig49279:2991..3132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49279 2992..3132 +
1622930810.6685102-CDS-H-elongata_contig49279:3709..37871622930810.6685102-CDS-H-elongata_contig49279:3709..3787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49279 3710..3787 +
1691679580.3293395-CDS-H-elongata_contig49279:3709..37871691679580.3293395-CDS-H-elongata_contig49279:3709..3787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49279 3710..3787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49279.12113.1prot_H-elongata_contig49279.12113.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49279 2992..3787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49279.12113.1

>prot_H-elongata_contig49279.12113.1 ID=prot_H-elongata_contig49279.12113.1|Name=mRNA_H-elongata_contig49279.12113.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
AEACVADCSNALELDPGRVKAYFRRALARELLGEDADALRDAKRTLELDP
GNKDAVKAARRIKDKVARAAAED
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mRNA from alignment at H-elongata_contig49279:2992..3787+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49279.12113.1 ID=mRNA_H-elongata_contig49279.12113.1|Name=mRNA_H-elongata_contig49279.12113.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=796bp|location=Sequence derived from alignment at H-elongata_contig49279:2992..3787+ (Himanthalia elongata Himel1 dioecious)
GCCGAGGCGTGCGTTGCTGACTGCAGTAATGCTTTGGAGCTTGACCCTGG CCGAGTGAAGGCCTACTTCAGGAGGGCTTTGGCGAGGGAGCTTCTGGGAG AGGACGCCGATGCCCTCCGAGACGCGAAGCGGACGTTAGAGGTGCTCAGG CGTGATTATGTAGCTATTATTACCAGTAACCCTAACCCTAACTCTACGAG ATACATTGACTTGTCCTTTGTTGTTTACCGTAGTGAGATATACGAACAAA CTAGGCGCGCTACTGGACGTTGATGGACATTTTGTCCTTTTGCGGGCTGT GGCTATGCGCCGTTCTCGGTACCGTTTTGGGTGTCGTTCCCGAGGGCCAA GTGCAGCACCGCCTTCGATCTATAGTTGTAGAGATCAACCAATAATATAT AGGCTAATCGCTAATCACTCAAAGAAGTCGACCCAAAATATTTTTTACTT GCAATTGATGAGTGATTAGTGATTAGTGATTAGAGCTATATATATATATA CTGTTATTGATTAGAGCTATTATTTATTAGTATTTGTCGCCTTGGACGTA CAGGTATCTAATTCCACAGAAACCATGTACACAAATGGGTACATGTACCC TCGATCGTTCATGCTATTTTATTCCTGACTGTTGACACTATACTACGATA CCGACAGCACTGTTGTTTCTGTGCCGTGCTCGATGTCGATGCTGCCGTTC CGATGGTGTGCCGTCCAGTTGGATCCAGGAAACAAAGATGCGGTTAAGGC GGCAAGAAGAATCAAAGACAAGGTGGCTCGAGCGGCCGCGGAGGAT
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Coding sequence (CDS) from alignment at H-elongata_contig49279:2992..3787+

>mRNA_H-elongata_contig49279.12113.1 ID=mRNA_H-elongata_contig49279.12113.1|Name=mRNA_H-elongata_contig49279.12113.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig49279:2992..3787+ (Himanthalia elongata Himel1 dioecious)
GCCGAGGCGTGCGTTGCTGACTGCAGTAATGCTTTGGAGCTTGACCCTGG
CCGAGTGAAGGCCTACTTCAGGAGGGCTTTGGCGAGGGAGCTTCTGGGAG
AGGACGCCGATGCCCTCCGAGACGCGAAGCGGACGTTAGAGGCCGAGGCG
TGCGTTGCTGACTGCAGTAATGCTTTGGAGCTTGACCCTGGCCGAGTGAA
GGCCTACTTCAGGAGGGCTTTGGCGAGGGAGCTTCTGGGAGAGGACGCCG
ATGCCCTCCGAGACGCGAAGCGGACGTTAGAGTTGGATCCAGGAAACAAA
GATGCGGTTAAGGCGGCAAGAAGAATCAAAGACAAGGTGGCTCGAGCGGC
CGCGGAGGATTTGGATCCAGGAAACAAAGATGCGGTTAAGGCGGCAAGAA
GAATCAAAGACAAGGTGGCTCGAGCGGCCGCGGAGGAT
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