mRNA_H-elongata_contig11523.1211.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11523.1211.1
Unique NamemRNA_H-elongata_contig11523.1211.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 1.340e-107
Identity = 178/208 (85.58%), Postives = 192/208 (92.31%), Query Frame = 1
Query:    1 MSQSIDEVLLGT-MKARGSSDDEGEG--DKFVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFLNHVRQEGEFGLPEVGDAGDPE---GIAEVVETLLEDVDSYLDEASGKGANQQVALMRHQLKTVASAARSGPAKYATMVANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPLELAPV 606
            MSQSIDEVLLGT  +  G  D+EGEG  DKFVRQLFESLLLGTRASNAIPDGE QEDYAYNATFPEFR+RAEGCGKQVLE+IQIFLNHV QEGE GLPEVGDAGDPE   GIA+VVETLLEDVDSYLDEA+GKGANQQVALMRHQLKTVASAARSGPAKYA+MV+NVVD+PKPQEAF+ EIDN RDTPFVP+LREKPNA+TPL+LAP+
Sbjct:    1 MSQSIDEVLLGTPARGAGGGDEEGEGEGDKFVRQLFESLLLGTRASNAIPDGEGQEDYAYNATFPEFRSRAEGCGKQVLEVIQIFLNHVSQEGELGLPEVGDAGDPEVFQGIADVVETLLEDVDSYLDEAAGKGANQQVALMRHQLKTVASAARSGPAKYASMVSNVVDMPKPQEAFQEEIDNSRDTPFVPKLREKPNAVTPLDLAPI 208          
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: A0A7S3UZH7_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3UZH7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.190e-19
Identity = 71/191 (37.17%), Postives = 106/191 (55.50%), Query Frame = 1
Query:   82 FVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFLNHVRQEGE-FGLPEVGDAGDP------EGIAEVVETLLEDVDSYLDEA-------SGK-------GANQQVALMRHQLKTVASAARSGPAKYATMVANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPL 591
            F + L+ +L+ GT+ASN++P  E  EDY+Y A+ PEF+ +     K+++ LI  F + V    E F L E+ DA DP      E +A+VV+ LLE+VDSYLDEA       SG         AN QV + + +L     A  +G      ++ +  +I +PQ  F   IDN R +PF+P+L+ K +A+ PL
Sbjct:   20 FEKNLYNALVHGTKASNSLPGDE--EDYSYYASLPEFKDKIGNFRKRIVNLIYKFASRVDSSDELFKLHELIDA-DPADFETFEPVADVVDLLLENVDSYLDEARRHSDNLSGLEKSNPSINANAQVEVSKSELVRDVRAGLNG------VITHDANIQRPQMNFDDAIDNSR-SPFIPKLKHKVHAIVPL 200          
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: UPI001457F2D4 (exosome component 10-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001457F2D4)

HSP 1 Score: 80.1 bits (196), Expect = 5.690e-14
Identity = 62/186 (33.33%), Postives = 97/186 (52.15%), Query Frame = 1
Query:   79 KFVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFLNHVRQEGEF--GLPEVGDAGDP-EGIAEVVETLLEDVDSYLDEASG-----------KGANQQVALMRHQLKTVASAARSGPAKYATMVANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPLE 594
            +F ++   ++L  T++SN +P     +D+ Y ++F  FR   +  GKQ+L ++Q  + H    G+   G  +V D  D  + + +  + +LE V S+LDEASG               +Q A      K   SAA+S PA Y  + A   +I +PQ  F+ ++DN    PFVPR++EKPNAL  LE
Sbjct:   25 EFTQKTLRAVLQATKSSNELPAAG--DDFDYYSSFQGFRDILDIEGKQILHIVQNVMQHQNVRGKLSHGSSDVLDLEDKFDVLTDANDQILERVGSWLDEASGIKKKDNTLVIASATPKQQASTSWNKKKSTSAAKS-PASYHLLSAK--NILRPQLRFKDKVDNGNQ-PFVPRIKEKPNALKSLE 204          
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: H3BAQ0_LATCH (HRDC domain-containing protein n=3 Tax=Latimeria chalumnae TaxID=7897 RepID=H3BAQ0_LATCH)

HSP 1 Score: 77.8 bits (190), Expect = 3.590e-13
Identity = 69/214 (32.24%), Postives = 110/214 (51.40%), Query Frame = 1
Query:   22 VLLGTMKARGSSDDE---GE-------GDKFVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFL------NHVRQEGEFGLPEVGDAGDPEGIAEVVETLLEDVDSYLDEASGKGANQQVAL---MRHQLKTVASAARSGPA----KYATM-VANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPL 591
            V  GT    G++++E   GE        D FV+    +++  T+AS  +P  +  ++Y +  +FP FRA  E  G ++L+ +   +      +H+R   +  + E+ D  D   + +  + +LE V  +LDEASG   NQQ  L   ++     V+S  R G A    K  T  + +  +IP+PQ  FR +IDN  +TPFVP++  KPNAL PL
Sbjct:    8 VGSGTKSKTGTAENEEKEGEVIPGFKDADSFVKYALGTVVTATKASGGLP--QAGDEYDFYCSFPGFRAFCESQGDRLLKCMSQLMQYHGCRSHIRDCNK--VTELEDKFDL--LVDSNDVILERVGIFLDEASGVNKNQQPVLPVGLQPPKTIVSSWNRKGSAANKSKSETFRLLHAKNIPRPQIKFREKIDNS-NTPFVPKIFIKPNALKPL 214          
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: A0A210Q5R3_MIZYE (Exosome component 10 n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210Q5R3_MIZYE)

HSP 1 Score: 73.6 bits (179), Expect = 1.030e-11
Identity = 55/183 (30.05%), Postives = 93/183 (50.82%), Query Frame = 1
Query:   88 RQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFLNHVRQEGEF--GLPEVGDAGDP-EGIAEVVETLLEDVDSYLDEASG-----------KGANQQVALMRHQLKTVASAARSGPAKYATMVANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPLE 594
            ++   ++L  T+ASN +P     +D+ Y ++F  FR   +  GK++L ++Q  + H    G    G  ++ D  D  + + +  + +LE V S+LDEASG               +Q A      K   SA +S  + +     N++   +PQ  F+ ++DN R+ PFVPR++EKPNA+  LE
Sbjct:    3 QKTLRAVLQATKASNDMPAAG--DDFDYYSSFQGFRDILDIEGKRILHIVQNVMQHQNVRGRLSHGSSDILDLEDKFDVLTDANDQILERVGSWLDEASGIKKKDNTLVLATATPKQQASSSWNKKKSTSATKSAASYHLLSAKNIL---RPQLRFKDKVDN-RNQPFVPRIKEKPNAMKSLE 179          
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: A0A8C8VKJ9_9SAUR (Exosome component 10 n=1 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8VKJ9_9SAUR)

HSP 1 Score: 72.4 bits (176), Expect = 2.600e-11
Identity = 63/188 (33.51%), Postives = 97/188 (51.60%), Query Frame = 1
Query:   70 EGDKFVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFL------NHVRQEGEFGLPEVGDAGDPEGIAEVVETLLEDVDSYLDEASGKGANQQVALMRH-QL-KTVASA-----ARSGPAKYATM-VANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPL 591
            + D FV+    +++  T+ASN +P  +  ++Y +  +FP FRA  E  G ++L  +   +      +H++   +    E+ D  D   + +  + +LE V   LDEA+G   NQQ  L    QL KTV S+       S   K  T  + +  +I +PQ  FR +IDN  +TPFVP+L  KPNAL PL
Sbjct:   80 DADSFVKHALGTVVAATKASNGLP--QAGDEYDFYRSFPGFRAYCETQGDRLLHCMSKVMQYHGCRSHIKDRSKA--TELEDKFDL--LVDSNDVILERVGILLDEAAGVNKNQQPILPAGMQLPKTVISSWNRKSGESNRTKSETFRLLHAKNITRPQFKFREKIDNS-NTPFVPKLFVKPNALKPL 260          
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: A0A7L4N9W6_9AVES (EXOSX protein (Fragment) n=1 Tax=Ceyx cyanopectus TaxID=390723 RepID=A0A7L4N9W6_9AVES)

HSP 1 Score: 72.0 bits (175), Expect = 3.370e-11
Identity = 62/209 (29.67%), Postives = 101/209 (48.33%), Query Frame = 1
Query:   43 ARGSSDDEGEG-----------DKFVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFL------NHVRQEGEFGLPEVGDAGDPEGIAEVVETLLEDVDSYLDEASGKGANQQVALMRHQL--KTVASA-------ARSGPAKYATMVANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPL 591
            A G +  EG G           D FV+    +++  T+ASN +P  +  ++Y +  +FP FRA  E  G+++L  +   +      +H+R   +  + E+ D  D   + +  + +LE V   LDEA+G   NQQ  L       +T+ S+       +  G       + +  +I +PQ  FR ++DN  +TPFVP+L  KPNAL PL
Sbjct:   26 AAGLAGSEGSGSAAVLPGFDDVDAFVKHALGTVVAATKASNGLP--QPGDEYDFYRSFPGFRAFCETQGERLLHCMSRVMQHHGCRSHLRDRSK--VTELEDKFDM--LVDANDIILERVGILLDEAAGVNRNQQPVLPAGSQPPQTIISSWNRKAGESHKGSQSETFRLLHAKNISRPQLRFREKVDNS-NTPFVPKLCIKPNALKPL 227          
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: A0A8D2LBW2_VARKO (Exosome component 10 n=3 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2LBW2_VARKO)

HSP 1 Score: 72.0 bits (175), Expect = 3.500e-11
Identity = 58/192 (30.21%), Postives = 101/192 (52.60%), Query Frame = 1
Query:   70 EGDKFVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFL------NHVRQEGEFGLPEVGDAGDPEGIAEVVETLLEDVDSYLDEASGKGANQQVAL---MRHQLKTVASAARSG--PAKYATM----VANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPLELA 600
            + D FV+    +++  T+AS+ +P  +  ++Y +  +FP F+A  E  G ++L+ +   +      +H++   +    E+ D  D   + +  + +LE V   LDEA+G   NQQ  L   ++     ++S  R G   +K+A      + +  +IP+PQ  FR ++DN  +TPFVP+L  KPNAL PL  A
Sbjct:   33 DADSFVKHALGTVVSATKASSGLP--QPGDEYDFYRSFPGFQAYCETQGDRLLQCMSRVMQYHGCRSHLQDHSKA--TELEDKFDL--LVDANDAILERVGMLLDEAAGVNRNQQPVLPVGLQPPKTIISSWNRKGGEASKWARQDTFRLLHAKNIPRPQLRFREKVDNS-NTPFVPKLFVKPNALKPLSEA 217          
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: K7FBX4_PELSI (HRDC domain-containing protein n=23 Tax=Cryptodira TaxID=8464 RepID=K7FBX4_PELSI)

HSP 1 Score: 72.0 bits (175), Expect = 3.500e-11
Identity = 58/188 (30.85%), Postives = 95/188 (50.53%), Query Frame = 1
Query:   70 EGDKFVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFL------NHVRQEGEFGLPEVGDAGDPEGIAEVVETLLEDVDSYLDEASGKGANQQVAL---MRHQLKTVASAARSGPAKYATM-----VANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPL 591
            + D FV+    +++  T+ASN +P  +  ++Y +  +FP FRA  E  G ++L  +   +      +HV+   +    E+ D  D   + +  + +LE V   LDEA+G   NQQ  L   M+     ++S  R     + T      + +  +I +PQ  FR +IDN  +TPF+P+L  KPNAL PL
Sbjct:   45 DADSFVKHALGTVVAATKASNGLP--QPGDEYDFYRSFPGFRAYCETQGDRLLHCMSKVMQYHGCRSHVKDHNKA--TELEDKFDL--LVDSNDVILEKVGILLDEAAGVNKNQQPILPAGMQVPKTIISSWNRKSGESHRTKSEIFRLLHAKNITRPQLRFREKIDNS-NTPFIPKLFVKPNALKPL 225          
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: M7CKC7_CHEMY (Non-specific serine/threonine protein kinase n=1 Tax=Chelonia mydas TaxID=8469 RepID=M7CKC7_CHEMY)

HSP 1 Score: 72.0 bits (175), Expect = 3.810e-11
Identity = 59/188 (31.38%), Postives = 95/188 (50.53%), Query Frame = 1
Query:   70 EGDKFVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFL------NHVRQEGEFGLPEVGDAGDPEGIAEVVETLLEDVDSYLDEASGKGANQQVAL---MRHQLKTVASAARSGPAKYATM-----VANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPL 591
            + D FV+    +++  T+ASN +P  +  ++Y +  +FP FRA  E  G ++L  +   +      +H++   +    E+ D  D   + +  + +LE V   LDEA+G   NQQ  L   M+     V+S  R     + T      + +  +I +PQ  FR +IDN  +TPFVP+L  KPNAL PL
Sbjct:  775 DADSFVKHALGTVVAATKASNGLP--QPGDEYDFYRSFPGFRAYCETQGDRLLHCMSKVMQYHGCRSHIKDRSKA--TELEDKFDL--LVDSNDVILERVGILLDEAAGVNKNQQPILPAGMQLPKTIVSSWNRKSGESHRTKSETFRLLHAKNITRPQLKFREKIDNS-NTPFVPKLFVKPNALKPL 955          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE8_ECTSI1.340e-10785.58HRDC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S3UZH7_9STRA5.190e-1937.17Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
UPI001457F2D45.690e-1433.33exosome component 10-like n=1 Tax=Pecten maximus T... [more]
H3BAQ0_LATCH3.590e-1332.24HRDC domain-containing protein n=3 Tax=Latimeria c... [more]
A0A210Q5R3_MIZYE1.030e-1130.05Exosome component 10 n=2 Tax=Mizuhopecten yessoens... [more]
A0A8C8VKJ9_9SAUR2.600e-1133.51Exosome component 10 n=1 Tax=Pelusios castaneus Ta... [more]
A0A7L4N9W6_9AVES3.370e-1129.67EXOSX protein (Fragment) n=1 Tax=Ceyx cyanopectus ... [more]
A0A8D2LBW2_VARKO3.500e-1130.21Exosome component 10 n=3 Tax=Varanus komodoensis T... [more]
K7FBX4_PELSI3.500e-1130.85HRDC domain-containing protein n=23 Tax=Cryptodira... [more]
M7CKC7_CHEMY3.810e-1131.38Non-specific serine/threonine protein kinase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11523contigH-elongata_contig11523:615..3171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.7
Seed ortholog evalue2.8e-92
Seed eggNOG ortholog2880.D8LQE8
KEGG rclassRC02795
KEGG koko:K02335,ko:K12591,ko:K12951,ko:K17680
KEGG TC3.A.3
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03018,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03018,map03030,map03410,map03420,map03440
GOsGO:0000175,GO:0000178,GO:0000460,GO:0000785,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007549,GO:0008150,GO:0008152,GO:0008298,GO:0008334,GO:0008408,GO:0008409,GO:0009048,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010639,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0034061,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0040029,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043633,GO:0043634,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051641,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071030,GO:0071033,GO:0071034,GO:0071035,GO:0071043,GO:0071044,GO:0071046,GO:0071048,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1904356,GO:1904357,GO:1904872,GO:1905354,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsCOG0349@1,KOG2206@2759
EC2.7.7.7,3.6.4.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03029,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size606
Cds size606
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11523.1211.1prot_H-elongata_contig11523.1211.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11523 615..3171 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929667.6877804-CDS-H-elongata_contig11523:614..8241622929667.6877804-CDS-H-elongata_contig11523:614..824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11523 615..824 -
1691679112.298314-CDS-H-elongata_contig11523:614..8241691679112.298314-CDS-H-elongata_contig11523:614..824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11523 615..824 -
1622929667.701032-CDS-H-elongata_contig11523:1181..12651622929667.701032-CDS-H-elongata_contig11523:1181..1265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11523 1182..1265 -
1691679112.3128958-CDS-H-elongata_contig11523:1181..12651691679112.3128958-CDS-H-elongata_contig11523:1181..1265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11523 1182..1265 -
1622929667.718659-CDS-H-elongata_contig11523:2145..22981622929667.718659-CDS-H-elongata_contig11523:2145..2298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11523 2146..2298 -
1691679112.321481-CDS-H-elongata_contig11523:2145..22981691679112.321481-CDS-H-elongata_contig11523:2145..2298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11523 2146..2298 -
1622929667.7291555-CDS-H-elongata_contig11523:3012..31711622929667.7291555-CDS-H-elongata_contig11523:3012..3171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11523 3013..3171 -
1691679112.329948-CDS-H-elongata_contig11523:3012..31711691679112.329948-CDS-H-elongata_contig11523:3012..3171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11523 3013..3171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11523.1211.1

>prot_H-elongata_contig11523.1211.1 ID=prot_H-elongata_contig11523.1211.1|Name=mRNA_H-elongata_contig11523.1211.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
MSQSIDEVLLGTMKARGSSDDEGEGDKFVRQLFESLLLGTRASNAIPDGE
RQEDYAYNATFPEFRARAEGCGKQVLELIQIFLNHVRQEGEFGLPEVGDA
GDPEGIAEVVETLLEDVDSYLDEASGKGANQQVALMRHQLKTVASAARSG
PAKYATMVANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPLELA
PV
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mRNA from alignment at H-elongata_contig11523:615..3171-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11523.1211.1 ID=mRNA_H-elongata_contig11523.1211.1|Name=mRNA_H-elongata_contig11523.1211.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2557bp|location=Sequence derived from alignment at H-elongata_contig11523:615..3171- (Himanthalia elongata Himel1 dioecious)
ATGAGTCAAAGCATCGACGAAGTGCTCCTGGGGACGATGAAGGCGAGGGG AAGCAGCGACGACGAAGGAGAGGGCGACAAGTTCGTGCGGCAGCTGTTCG AGAGCCTCTTGCTCGGGACTCGGGCGTCGAACGCTATCCCGGACGGGGAG AGACAGGAGGTGGGAGCCGGTACCGGTGACAATGCCTTCCGCGGTTTTAT GCTTGGGTGCTGTAGTTGTTGTGTTTCCTTTGGCGTACTGGTGCTAGAGG GTGCTAGAGAGTGCTAGAGGGTGCTAGAGGGTCGTCTTTGCTGCTGTATG TCGCCTGGAGGATGTGTATATATTTTTTTGGGGGGGTAGTGTATCGTGGT GTCCGATTTTTGCGGCGACCGTGGAATCCTTTCTTCTGCGCCCCCATCGT GTTCCTTGTGAGCACACATTGCGGTGTTGGGTATGCAAGATGGTCTAGGA TAATAATAATAATAACGTGGTGGGGATCCTTGCCTTCACGCCTTCATCGC ATATCCCGCCGGTCCATCACGCCTTCCTTGTTGGCGAAATCGCAGATCCT CTATAAAAACTCATGGGAATGGCGGAATCGCAGATCCTCTATAAAAACTC ATGGGAATGGCGGAATCGCAGCTGCTGCACTTGCACTTCTTTTGTTTTCT TTTGTTGTCTTGAAGATCATGCATACTTCGCCCCCCCCCCCTCCCCCCCC ACCCTTTCCTGAGACAATCTGACAATCCAGAGGTAAATGCCGTAAAAGCA CCAAACGTTGCCCTCGAAGTAGCAGCAGAAACAGCGGCATTCACGGCGGA ATACCCCAGAGACTGTCGAACGGCTTATCTTCCCTCGAAACGTATGCTTC GATGTATTCTTTGATCTTCATAGGACTACGCGTACAATGCCACGTTTCCC GAGTTTCGGGCGAGGGCAGAGGGCTGCGGGAAACAGGTCCTTGAGCTCAT CCAGATCTTCCTGAACCACGTCAGACAGGAGGGAGAGTTCGGGCTGCCCG AGGTCGGGGATGCCGGAGACCCGGAGGTTTTCCAGGCGAGGATCGAGCGC CTGTGAAAAATAATCAATCGATGAGGCTTGCATCAACGTTCTTAAGGAGG CGGTGTCCTGATGAGGTCCCGTCAGATCCTATACCCGTGTGTATCACAAC AGAAGCGCGAGGAGGGGAGATAGGAGGAGGGGGGGGGAGCTACCTTTTGT CCCCTCCTCCATATCCATCTCCTTTTTCTGCATTTTTTTTTCGGCCCTCT TTGAGCTGGGTGGCATTCTTTTCCAATTATCTCCCCATTCTCTCTCTCAT GCACAAACTCTAAATGGAGTATATATAGAGTATATGAGGTAGTGTATGGG CCGTGGTAACGCGCGAGGAAGTGCCGTAGTAGCGTAGTAGGGTAGGCGAG GCTAAGCCCGACATCGCTATTCATATCGCGTAGATGAATCGATGGCGTGA AGGAAACAAAAATGTACTGGGTCTTGATACGTGCGCGACGTCGTTTACTT GGACGATTCCATCGTGTGCTGTACTGGATGGAAAATCATATATATATATA TATAATATCATACGTAAATACAGTTACTTGTTACAATGCATGCCACCTGC TGTAAAGCTAGTACATTGGACTACATGAAAAAAACGCCTCCGAAAAAAGA GGGAAACACGGGTCGTGATTCTTCGCTTCCATACACACATACACAGTCGC GTTTGATCAAAGCTTTTCGGAATAAGTATCATTGATCCCCCCCTAGGAGG ATAGATCAATACGAGTGGCATAGAATGACTAGGACGACAGGGCCGGATTG CGCGGTTATGTGCAATTTAATAAATACACACACACACACACATATATATA TATATATATACACACACATACCCCTCACCCCACCCGCTTCTCTCTCTGTT TGGCAGGGGATCGCCGAAGTGGTCGAGACTCTGCTGGAAGATGTGGATTC CTACCTTGACGAAGCTTCCGGAAAAGGAGCCAATCAGCAGGTGTCCCCCC ATAGTATATTATTAATGCAATGGCAGTTTGCCCTCGAAGCAAGCGGTGGA CTTGCTATATTAGAATAGAATCCGGTGGGGCGGGGGGGGGGGCTATTGAA GAGGGGTAGTGTCGNNNNNNNNNNGGGGGGGGAGGGGGGGGGGGGGGGGG GGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCTATTGAAGA GGTGTAGTGTCGTCGAGGACGAAGGGTTTTCACACGAGTCAAGGCGTGCC GTCTCGACGTTGAACTACTTTCTTCCACCCTGGTGCCAACGCAAATCTCA TCCGCTGACAAAACCCCGGCTCTCGTGCGCGTGCGCGGAACGAAAAGGTG GCTCTCATGCGGCACCAGCTGAAAACCGTGGCATCTGCCGCTCGCAGCGG GCCCGCCAAGTATGCGACCATGGTGGCTAACGTGGTCGACATACCGAAAC CCCAGGAGGCGTTTCGGGGAGAGATCGACAACGACCGAGACACGCCTTTC GTGCCGCGACTGCGAGAGAAGCCGAACGCTTTGACGCCCCTCGAACTCGC CCCGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig11523:615..3171-

>mRNA_H-elongata_contig11523.1211.1 ID=mRNA_H-elongata_contig11523.1211.1|Name=mRNA_H-elongata_contig11523.1211.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig11523:615..3171- (Himanthalia elongata Himel1 dioecious)
ATGAGTCAAAGCATCGACGAAGTGCTCCTGGGGACGATGAAGGCGAGGGG
AAGCAGCGACGACGAAGGAGAGGGCGACAAGTTCGTGCGGCAGCTGTTCG
AGAGCCTCTTGCTCGGGACTCGGGCGTCGAACGCTATCCCGGACGGGGAG
AGACAGGAGATGAGTCAAAGCATCGACGAAGTGCTCCTGGGGACGATGAA
GGCGAGGGGAAGCAGCGACGACGAAGGAGAGGGCGACAAGTTCGTGCGGC
AGCTGTTCGAGAGCCTCTTGCTCGGGACTCGGGCGTCGAACGCTATCCCG
GACGGGGAGAGACAGGAGGACTACGCGTACAATGCCACGTTTCCCGAGTT
TCGGGCGAGGGCAGAGGGCTGCGGGAAACAGGTCCTTGAGCTCATCCAGA
TCTTCCTGAACCACGTCAGACAGGAGGGAGAGTTCGGGCTGCCCGAGGTC
GGGGATGCCGGAGACCCGGAGGACTACGCGTACAATGCCACGTTTCCCGA
GTTTCGGGCGAGGGCAGAGGGCTGCGGGAAACAGGTCCTTGAGCTCATCC
AGATCTTCCTGAACCACGTCAGACAGGAGGGAGAGTTCGGGCTGCCCGAG
GTCGGGGATGCCGGAGACCCGGAGGGGATCGCCGAAGTGGTCGAGACTCT
GCTGGAAGATGTGGATTCCTACCTTGACGAAGCTTCCGGAAAAGGAGCCA
ATCAGCAGGGGATCGCCGAAGTGGTCGAGACTCTGCTGGAAGATGTGGAT
TCCTACCTTGACGAAGCTTCCGGAAAAGGAGCCAATCAGCAGGTGGCTCT
CATGCGGCACCAGCTGAAAACCGTGGCATCTGCCGCTCGCAGCGGGCCCG
CCAAGTATGCGACCATGGTGGCTAACGTGGTCGACATACCGAAACCCCAG
GAGGCGTTTCGGGGAGAGATCGACAACGACCGAGACACGCCTTTCGTGCC
GCGACTGCGAGAGAAGCCGAACGCTTTGACGCCCCTCGAACTCGCCCCGG
TAGTGGCTCTCATGCGGCACCAGCTGAAAACCGTGGCATCTGCCGCTCGC
AGCGGGCCCGCCAAGTATGCGACCATGGTGGCTAACGTGGTCGACATACC
GAAACCCCAGGAGGCGTTTCGGGGAGAGATCGACAACGACCGAGACACGC
CTTTCGTGCCGCGACTGCGAGAGAAGCCGAACGCTTTGACGCCCCTCGAA
CTCGCCCCGGTA
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