prot_H-elongata_contig49103.12090.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49103.12090.1
Unique Nameprot_H-elongata_contig49103.12090.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length352
Homology
BLAST of mRNA_H-elongata_contig49103.12090.1 vs. uniprot
Match: D7FM04_ECTSI (Similar to voltage-dependent calcium channel T-type alpha 1I subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM04_ECTSI)

HSP 1 Score: 449 bits (1154), Expect = 5.690e-140
Identity = 235/366 (64.21%), Postives = 280/366 (76.50%), Query Frame = 0
Query:    1 SCSSQFWKSIEAISMVRLVRLGHIIPEIQEILHVFTKSSGVMFPLLAILTVLTYLWSVFGVILFGSDTYLAALFGEGFAWEPMNRHQGFFSVAQGMQTMLGVATTPGSNGWLTLMESYEGVTPEEWRWGVVCFFSSYAILTRFLLVNFFMMTLLFMYKMHSNKKVGIAIEQVNQFKLAWMSHAFTYTKEYSTIYAGQLVGLLKDLSLPLGVGAEGSYYDCQVLAKKVLCAIGINSVAHVPAEHLAQVLSLWNGI--RWGAAAV--------SGPGSIKLDFSKACQMPNVLVAVHRILLFGVTLEEERQINDTRARARSNLSVLKLGR----TAVAECSLLRTQLPATFMARSSVSLTGEFLRWKD 352
            S S+ FW+++EA SMVRLVRLG ++P  QE L V  KSS V+FPLL +LT LTYLWSVFGV+ FG++TYLA LFG+G  WE +NRHQGFFSVAQGMQTM+GVATTPGSNGW+TLM+ YE VT  +WRW VV FF SYA+LTRFLLV+FFM+TLLF YK HS  K G+AIEQVNQFK AWM+HA+ YTKEY++IYAGQLV LL++L  PLG+G EGSYYDCQ+LAKKVL A+GI+ VAHVPAE L  VLSL+       G   +        SGPG I+L+FSK      VLVAVHRI+LF +TLE+ERQ+N+ R  A  NL+V          A+ ECS+LRTQLPATF AR S++LT EFLRWKD
Sbjct: 1235 SSSASFWRAVEAASMVRLVRLGQVLPNAQEFLLVIAKSSSVVFPLLLVLTALTYLWSVFGVLFFGNETYLAGLFGDGNPWETVNRHQGFFSVAQGMQTMIGVATTPGSNGWITLMQRYEDVTSPQWRWAVVTFFGSYALLTRFLLVHFFMITLLFKYKTHSYDKAGVAIEQVNQFKQAWMAHAYRYTKEYTSIYAGQLVDLLRELPPPLGIGKEGSYYDCQILAKKVLIALGIDVVAHVPAEDLTGVLSLYGSTVEHLGGKPLPVQRNGFGSGPGFIRLNFSK------VLVAVHRIVLFDLTLEDERQVNERRNNAMRNLTVATTRAQQEGVALRECSVLRTQLPATFRARISMALTAEFLRWKD 1594          
BLAST of mRNA_H-elongata_contig49103.12090.1 vs. uniprot
Match: A0A6H5K4Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Y6_9PHAE)

HSP 1 Score: 368 bits (944), Expect = 1.870e-115
Identity = 185/284 (65.14%), Postives = 225/284 (79.23%), Query Frame = 0
Query:    1 SCSSQFWKSIEAISMVRLVRLGHIIPEIQEILHVFTKSSGVMFPLLAILTVLTYLWSVFGVILFGSDTYLAALFGEGFAWEPMNRHQGFFSVAQGMQTMLGVATTPGSNGWLTLMESYEGVTPEEWRWGVVCFFSSYAILTRFLLVNFFMMTLLFMYKMHSNKKVGIAIEQVNQFKLAWMSHAFTYTKEYSTIYAGQLVGLLKDLSLPLGVGAEGSYYDCQVLAKKVLCAIGINSVAHVPAEHLAQVLSLWNGIR--WGAAAV--------SGPGSIKLDFSKA 274
            S S+ FW+++EA SMVRLVRLG+++P  Q+ L V  KSS V+FPLL +LT LTYLWSVFGV+ FG++TYLA LFG+G  WE +NRHQGFFSVAQGMQTM+GVATTPGSNGW+TLM+ YE VT  +W+W VV FF SYA+LTRFLLV FFM+TLLF YK HS  K G+AIEQVNQFK AWM+HA+ YTKEY++IYAGQLV LL++L  PLG+G+EGS+YDCQ+LAKKVL A+GI+ VAHVPAE L  VLSL+       G   +        SGPG I+L+FSK+
Sbjct:  758 SSSASFWRAVEAASMVRLVRLGNVLPNAQDFLLVIAKSSSVVFPLLLVLTALTYLWSVFGVLFFGNETYLAGLFGDGNPWETVNRHQGFFSVAQGMQTMIGVATTPGSNGWITLMQRYEDVTSPQWKWAVVMFFGSYALLTRFLLVQFFMITLLFKYKTHSYDKAGVAIEQVNQFKQAWMAHAYRYTKEYASIYAGQLVDLLRELPPPLGIGSEGSHYDCQILAKKVLIALGIDVVAHVPAEDLTGVLSLYGSTAELGGGKPLPVHRNGFGSGPGFIRLNFSKS 1041          
BLAST of mRNA_H-elongata_contig49103.12090.1 vs. uniprot
Match: A0A835ZJT8_9STRA (Ion transport protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJT8_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.280e-51
Identity = 107/245 (43.67%), Postives = 152/245 (62.04%), Query Frame = 0
Query:    7 WKSI-EAISMVRLVRLGHIIPEIQEILHVFTKSSGVMFPLLAILTVLTYLWSVFGVILFGSDTYLAALFGEGFAWEPMNRHQGFFSVAQGMQTMLGVATTPGSNGWLTLMESY-EGVTPEEWRWGVVCFFSSYAILTRFLLVNFFMMTLLFMYKMHSNKKVGIAIEQVNQFKLAWMSHAFTYTKEYSTIYAGQLVGLLKDLSLPLGVGAEGSYYDCQVLAKKVLCAIGINSVAHVPAEHLAQVLS 249
            W+ +  A+S+VR+ RLG     I E+++V  +S  ++ PL+A+L + T+ W   G++ FG+D +   L G G   EP+NR+ GF S+A  MQTM G AT+PGS GW  +  +Y +          V+ FFSSY +L R+LL N FMM L+F +K+HS+ K G+A+EQVN+F+ AW  HAF +T  Y +I A QL  LL +L  PLG   +  YYD QVLAKKVL A+G  +   +    LA VL+
Sbjct: 1288 WRRLLNALSVVRVARLGAYARTIPELVYVIARSLELILPLVALLALATFFWGTLGMVFFGNDRF-QNLLGSGRPHEPVNRYTGFLSLATAMQTMFGCATSPGSGGWWAVQSAYTDAAXXXXXXXXVILFFSSYTLLCRYLLWNVFMMVLMFKFKIHSSDKAGVAMEQVNEFRRAWKRHAFKHTGSYGSIRAWQLTELLWELPAPLGAKGKPCYYDAQVLAKKVLVAMGWRAARAIDTRILAIVLA 1531          
BLAST of mRNA_H-elongata_contig49103.12090.1 vs. uniprot
Match: A0A7S3ZSH4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSH4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 9.760e-14
Identity = 93/381 (24.41%), Postives = 170/381 (44.62%), Query Frame = 0
Query:    8 KSIEAISMVRLVRLGHIIPEIQEILHVFTKSSGVMFPLLAILTVLTYLWSVFGVILFGSDTYLAALFGEGFA----WEPMNRHQG---------FFSVAQGMQTMLGVATTPGSNGWLTLMESYEG-VTPEEWRWGVVCFFSSYAILTRFLLVNFFMMTLLFMYKMHSNK--KVGIAIEQVNQFKLAWMSHAFTYTKEYSTIYAGQLVGLLKDLSLPLGVGAEGSYYDCQVLAKKVLCAIGINSVAHVPAEHLAQVLSLWNGIRWGAAAVSGPGSIKLDFSKACQMPNVLVAVHRILLFGV--TLEEERQINDTRARARSNLSVLKLG-------------------RTAVAECSLLRTQLPATFMARSSVSLTGEFLRWK 351
            + + A+   ++  +  + PE+ ++ H  T + G +FP++ +++++T+ ++V G++LFG++         G+       PM R  G         F ++ + M T+   AT   SN W+   ++    + P  W +    F+ +Y +L RFL +N  + TL+++YK  S    +  IA++QV +F +AW  H   Y      I    L  LL+ LS PLG+  +         A+++L AI +     V       ++  W  +R    A SG         +  +  +VL  VHR+++F     L ++  +   R  A++ L +L+L                       VA+ SL++   P  F  R   +LT E  RW+
Sbjct: 1641 RGLVALRSTQVFLVVPLFPELAQVYHALTCALGTVFPMVGLMSIVTFAFAVIGMVLFGNEVVRKRDRDYGYTDTRQGMPMPRVYGSYWSATRVKFSTITKSMNTLFIAAT---SNNWVATRDAMRADLDPSLW-FANRLFWMAYILLVRFLFLN--VCTLIYIYKYESTSPDQPWIAMDQVEEFLVAWQ-HFDQYG--VGRIRTKLLSRLLRLLSPPLGLSRDAPQALADRHARRILMAIPLLLDDEVKTGE-PDLVKRWEEVRKPFTA-SGKADDHGRLPRYLEFHDVLKTVHRVVMFPELQALPDDEGLMLRREYAQAKLDILRLAVNRFCEPAARAIDAHGDRVPACVADMSLVQRARPDVFRYRLRQALTLEVYRWQ 2010          
BLAST of mRNA_H-elongata_contig49103.12090.1 vs. uniprot
Match: A0A7S3XKZ3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKZ3_HETAK)

HSP 1 Score: 77.0 bits (188), Expect = 7.060e-12
Identity = 77/331 (23.26%), Postives = 151/331 (45.62%), Query Frame = 0
Query:    3 SSQFWKSIEAISMVRLVRLGHIIPEIQEILHVFTKSSGVMFPLLAILTVLTYLWSVFGVILFGSDTY--LAALFGE-------GFAWEPMNRHQGFFSVAQGMQTMLGVATTPGSNGWLTLMESYEGVTPEE----WRWGVVCFFSSYAILTRFLLVNFFMMTLLFMYKMHSNKKVGIAIEQVNQFKLAWMSHAFTYTKEY---STIYAGQLVGLLKDLSLPLGVGAEGSYYDCQVLAKKVLCAIGINSVAHVPA-EHLAQVLSLWNGIRWGAAAVSGPGSIKLDFSKACQMPNVLVAVHRILLFGVTLEEERQINDTRARARSNLSVLKL 316
            ++ F +++E ++ +R++R   + PE++E++     +   +  L  +L ++ + ++V G+ILF +  +  L A   E        +  +   R+  F S+A     + G+ +    + W  LM+   G+  E     +    V +FSSY +  RFL++N FMM +L+ Y ++S  +VG+A ++V +   +W      Y KE    S I    L   L++L  PLG        D   +A KV+  I + +  H     + ++ ++ W   +        P S+           +++V +H    FG+    E+Q    R +A+  +  +KL
Sbjct:   60 NNPFHEAVELLAPLRVLRCISLYPEMEELVTTIRIALPAIISLYVLLFLMVFFYTVVGLILFSTADFGFLNAYREECTHVLDFHYCNDMYERNMHFRSLATTFNILFGLVS---GDHWTALMD---GIIAEMDSTIYSIFAVLYFSSYVVFGRFLILNLFMMNILYRYHINSPDQVGVAKDEVKKIHQSWTVMKKEYDKETIDPSVIQFKYLCTFLEELGDPLGTSRSVCGQDRVWIANKVVGEI-LENFGHTERYRNQSEAVTAWRESQNHPEKALNPVSLASINGMKINFSHLVVILHYYAFFGIPGLSEQQNTVERMQAKKEIRNMKL 383          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49103.12090.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FM04_ECTSI5.690e-14064.21Similar to voltage-dependent calcium channel T-typ... [more]
A0A6H5K4Y6_9PHAE1.870e-11565.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZJT8_9STRA1.280e-5143.67Ion transport protein-domain-containing protein n=... [more]
A0A7S3ZSH4_9STRA9.760e-1424.41Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3XKZ3_HETAK7.060e-1223.26Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.70coord: 26..160
e-value: 5.5E-6
score: 28.2
NoneNo IPR availablePANTHERPTHR45628:SF7VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1coord: 9..225
NoneNo IPR availablePANTHERPTHR45628FAMILY NOT NAMEDcoord: 9..225
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..40
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 158..352
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 41..64
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 65..127
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 128..157
NoneNo IPR availableTMHMMTMhelixcoord: 43..65
NoneNo IPR availableTMHMMTMhelixcoord: 138..157
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 10..149
e-value: 6.6E-8
score: 32.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49103contigH-elongata_contig49103:447..3708 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49103.12090.1mRNA_H-elongata_contig49103.12090.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49103 447..3708 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49103.12090.1 ID=prot_H-elongata_contig49103.12090.1|Name=mRNA_H-elongata_contig49103.12090.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=352bp
SCSSQFWKSIEAISMVRLVRLGHIIPEIQEILHVFTKSSGVMFPLLAILT
VLTYLWSVFGVILFGSDTYLAALFGEGFAWEPMNRHQGFFSVAQGMQTML
GVATTPGSNGWLTLMESYEGVTPEEWRWGVVCFFSSYAILTRFLLVNFFM
MTLLFMYKMHSNKKVGIAIEQVNQFKLAWMSHAFTYTKEYSTIYAGQLVG
LLKDLSLPLGVGAEGSYYDCQVLAKKVLCAIGINSVAHVPAEHLAQVLSL
WNGIRWGAAAVSGPGSIKLDFSKACQMPNVLVAVHRILLFGVTLEEERQI
NDTRARARSNLSVLKLGRTAVAECSLLRTQLPATFMARSSVSLTGEFLRW
KD
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005821Ion_trans_dom