mRNA_H-elongata_contig115192.1208.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115192.1208.1
Unique NamemRNA_H-elongata_contig115192.1208.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115192.1208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115192contigH-elongata_contig115192:147..1007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115192.1208.1prot_H-elongata_contig115192.1208.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115192 155..1007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929667.4746075-UTR-H-elongata_contig115192:146..1541622929667.4746075-UTR-H-elongata_contig115192:146..154Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115192 147..154 +
1691679112.2043436-UTR-H-elongata_contig115192:146..1541691679112.2043436-UTR-H-elongata_contig115192:146..154Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115192 147..154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929667.4908364-CDS-H-elongata_contig115192:154..2671622929667.4908364-CDS-H-elongata_contig115192:154..267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115192 155..267 +
1691679112.2147908-CDS-H-elongata_contig115192:154..2671691679112.2147908-CDS-H-elongata_contig115192:154..267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115192 155..267 +
1622929667.5102892-CDS-H-elongata_contig115192:841..10071622929667.5102892-CDS-H-elongata_contig115192:841..1007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115192 842..1007 +
1691679112.2229364-CDS-H-elongata_contig115192:841..10071691679112.2229364-CDS-H-elongata_contig115192:841..1007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115192 842..1007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115192.1208.1

>prot_H-elongata_contig115192.1208.1 ID=prot_H-elongata_contig115192.1208.1|Name=mRNA_H-elongata_contig115192.1208.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MKAYCKACWKAADAEAALREAKGEVVTINFNLMGQDNTVTLRHFTFKEGL
FNSFFTHCTSKDGSAGRATMKAGGGGQNCPACDTEDVIQLTCN
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mRNA from alignment at H-elongata_contig115192:147..1007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115192.1208.1 ID=mRNA_H-elongata_contig115192.1208.1|Name=mRNA_H-elongata_contig115192.1208.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=861bp|location=Sequence derived from alignment at H-elongata_contig115192:147..1007+ (Himanthalia elongata Himel1 dioecious)
AGGCAGCCATGAAGGCGTACTGCAAGGCGTGCTGGAAGGCTGCAGACGCT
GAAGCCGCACTTCGCGAGGCGAAGGGTGAAGTCGTCACCATCAACTTCAA
CCTCATGGGACAGGATAACACGTAAGCCTGTTGCCCCTGCTTACCTCTAA
GGATCGTTTCTGTTTTACGTGCTTCTCCACCTCTAAACGTAATGAGAGCC
TATGCACCGCCGTTTCGACTTCCGTCGGTTGTTGGCCGATTGTAGGAAAT
AAGTCTTTTAAATAAAAATATATGTAATACGCTTCGTATACTGGGCCGTT
GGCGCGAAAGAATGAAAGTCATGATTTACAACCACGAATTATGAACTTAG
ATGTTAGAACTAAGGTGTGCTTACAATAATCAAGTTTAGACCGGATTGTT
TTTCGATGGAAATGGCCCTTATACCGTGGTTGTTTCTCCATCACATTAGA
ACACACGTAGTTTTTTTGTTTACACGAAGAGCTTTGCACCGTCGACCCCA
CTCTTGCCGTCGGTACTACGCTGGCCCCTCCAAACCCACGGTGCACGACT
GTAAAGCGGAAAAAACAGTACTTCCCCGCTATACTAGATTAATAAGCCTT
CTTGATGGGTCTATAAAAACTGTCCATCGGATGCATGATGTGCTACAGGA
AAAGGTTTACGAATATACTCTTGTTTTCCTCGGCGCACGTGGCAGGGTTA
CCCTGCGACATTTCACTTTCAAGGAGGGCCTGTTCAACAGCTTCTTCACC
CACTGCACGTCGAAAGATGGGAGCGCAGGGCGGGCAACGATGAAGGCTGG
GGGTGGCGGGCAGAATTGCCCTGCGTGCGACACCGAGGACGTGATACAGC
TCACGTGCAAT
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Coding sequence (CDS) from alignment at H-elongata_contig115192:147..1007+

>mRNA_H-elongata_contig115192.1208.1 ID=mRNA_H-elongata_contig115192.1208.1|Name=mRNA_H-elongata_contig115192.1208.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig115192:147..1007+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGCGTACTGCAAGGCGTGCTGGAAGGCTGCAGACGCTGAAGCCGC
ACTTCGCGAGGCGAAGGGTGAAGTCGTCACCATCAACTTCAACCTCATGG
GACAGGATAACACATGAAGGCGTACTGCAAGGCGTGCTGGAAGGCTGCAG
ACGCTGAAGCCGCACTTCGCGAGGCGAAGGGTGAAGTCGTCACCATCAAC
TTCAACCTCATGGGACAGGATAACACGGTTACCCTGCGACATTTCACTTT
CAAGGAGGGCCTGTTCAACAGCTTCTTCACCCACTGCACGTCGAAAGATG
GGAGCGCAGGGCGGGCAACGATGAAGGCTGGGGGTGGCGGGCAGAATTGC
CCTGCGTGCGACACCGAGGACGTGATACAGCTCACGTGCAATGGTTACCC
TGCGACATTTCACTTTCAAGGAGGGCCTGTTCAACAGCTTCTTCACCCAC
TGCACGTCGAAAGATGGGAGCGCAGGGCGGGCAACGATGAAGGCTGGGGG
TGGCGGGCAGAATTGCCCTGCGTGCGACACCGAGGACGTGATACAGCTCA
CGTGCAAT
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