mRNA_H-elongata_contig4900.12076.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4900.12076.1
Unique NamemRNA_H-elongata_contig4900.12076.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig4900.12076.1 vs. uniprot
Match: D8LIA4_ECTSI (Kinesin-associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA4_ECTSI)

HSP 1 Score: 337 bits (865), Expect = 1.830e-107
Identity = 181/251 (72.11%), Postives = 207/251 (82.47%), Query Frame = 1 
Query:   13 QVLGTLNNLTALDLPKGIGWVDVLTKYALAPFLTKLLVPGMAQNDVVLEVVILSGVVAQDPKAAVLLAGSRLISTLHDLWSDMSGDTEITLQLLLTLWWLLHTKESREEVLYSTEALTEMLDALDSRHSPTRSMANACMEVVLEFDRKEEGRLGQRGGQVGRRRFASHNREWLRATSQQEEEIEMVFGSRGGESDGGPLSDSEDQDDMAGSVELS-YQGSGGRRSSPRRGASA-SDPSGIGDDLSWPTGWE 759
            +VLGTLNNLT LDLP+GIGWVDVL+ YALAPFLTKLLVPGMAQND++LEVVIL+GV+AQDP+AA LLAGSRLIS LHDLWSD SGDTEITLQLLLTLWWLLHTKESREE+LYST AL EMLDALDSRH PTR+MA ACM++VLEFDR ++GRLGQ G QV RRRFA+HNREWL A SQ E+ +++V+GSR   ++G PLSDSED             +G   RRSS R G+S  +DP+G GDDLSW  GWE
Sbjct:  565 EVLGTLNNLTTLDLPRGIGWVDVLSNYALAPFLTKLLVPGMAQNDIILEVVILAGVMAQDPQAAALLAGSRLISALHDLWSDKSGDTEITLQLLLTLWWLLHTKESREEILYSTGALAEMLDALDSRHPPTRAMATACMDIVLEFDRSDDGRLGQMGEQVRRRRFAAHNREWLHAASQIED-MDVVYGSRA-RNNGVPLSDSEDXXXXXXXXXXXPEEGPARRRSSGRGGSSGGNDPAGNGDDLSWSNGWE 813
[Close]
BLAST of mRNA_H-elongata_contig4900.12076.1 vs. uniprot
Match: A0A836C6Y4_9STRA (Kinesin-associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6Y4_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.600e-56
Identity = 119/249 (47.79%), Postives = 153/249 (61.45%), Query Frame = 1 
Query:   13 QVLGTLNNLTALDLPKGIGWVDVLTKYALAPFLTKLLVPGMAQNDVVLEVVILSGVVAQDPKAAVLLAGSRLISTLHDLWSDMSGDTEITLQLLLTLWWLLHTKESREEVLYSTEALTEMLDALDSRHSPTRSMANACMEVVLEFDRKEEGRLGQRGGQVGRRRFASHNREWLRATSQQEEEIEMVFGSRGGESDGGPL-SDSEDQDDMAGSVELSYQGSGGRRSSPRRGASASDPSGIGDDLSWPTGW 756
            + +GTL+NLT LDLPKG+GW  V++ Y+L   L KLLVPGMAQ DV+LE VIL G +A D  AA LL  S ++  L  LW D  GD E+ LQLL   W LL  KE+RE++LY T A+++ML+ L SRH  TR++A+ C+E+VLE+DR + G  GQ    + R+R+A+HNREWL+ATS  E   +   G  GG   G  L SDSED             G+GG   S  RG +   P G  D  SW  GW
Sbjct:  555 EAMGTLSNLTHLDLPKGVGWAQVVSNYSLDSVLAKLLVPGMAQADVILEAVILLGALAHDAAAAALLGASTVLRCLPALWRDARGDAELRLQLLFAQWRLLMVKETREQLLYGTTAVSDMLEGLQSRHPATRALADQCLELVLEYDRSDSGGPGQLSETIKRQRWAAHNREWLQATSMDESPSQ---GDDGGARGGALLLSDSED-------------GNGGMSLSQLRGMNVLSP-GTEDSASWNNGW 786
[Close]
BLAST of mRNA_H-elongata_contig4900.12076.1 vs. uniprot
Match: A0A7S2SW89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW89_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.320e-47
Identity = 88/180 (48.89%), Postives = 127/180 (70.56%), Query Frame = 1 
Query:   13 QVLGTLNNLTALDLPKGIGWVDVLTKYALAPFLTKLLVPGMAQNDVVLEVVILSGVVAQDPKAAVLLAGSRLISTLHDLWSDMSGDTEITLQLLLTLWWLLHTKESREEVLYSTEALTEMLDALDSRHSPTRSMANACMEVVLEFDRKEEGRLGQRGGQVGRRRFASHNREWLRATSQQE 552
            +VLGTL NLT LD+P+  GW   + ++ L  ++++LLVPGMAQ+DVVLEVV+L G    DP+ A L+A S ++  LH+LW D + D+EI LQLL   + LLH +E+REEVLY+T A+ +ML  +D RH   R++A  C+E+VLE +R E+G  G+ G Q+ +RRF  HN+EWL A  +++
Sbjct:  558 EVLGTLGNLTVLDMPRAAGWARTIKEHDLLSYVSRLLVPGMAQHDVVLEVVLLVGQFLTDPRTAALVASSGVVGGLHELWKDRNDDSEIQLQLLDVFYRLLHYEETREEVLYNTRAVMDMLSCVDHRHPNVRAVALDCLEIVLELNRGEDGSPGELGQQILKRRFQVHNQEWLEAMDRED 737
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BLAST of mRNA_H-elongata_contig4900.12076.1 vs. uniprot
Match: F0XZK9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZK9_AURAN)

HSP 1 Score: 169 bits (428), Expect = 1.510e-44
Identity = 88/179 (49.16%), Postives = 121/179 (67.60%), Query Frame = 1 
Query:   13 QVLGTLNNLTALDLPKGIGWVDVLTKYALAPFLTKLLVPGMAQNDVVLEVVILSGVVAQDPKAAVLLAGSRLISTLHDLWSDMSGDTEITLQLLLTLWWLLHTKESREEVLYSTEALTEMLDALDSRHSPTRSMANACMEVVLEFDRKEEGRLGQRGGQVGRRRFASHNREWLRATSQQ 549
            +VLGTL NLT  DL +G  W   + +++L  +L+KLLVPGMAQ+DVVLE V+ +GV+A +  AA  +A S L  +L ++W D S D EITLQLL T   LL  +E+ +E+LY++  L ++LD L + +    S ANAC+++V+E DR E G LG+ G QV RRRF SHNREWL    Q+
Sbjct:  532 EVLGTLGNLTRHDLLRGATWAKYIEEFSLTGYLSKLLVPGMAQHDVVLEAVVFAGVLATERDAANAIASSSLARSLEEVWRDKSDDAEITLQLLFTFQHLLAHRETHDEILYNSRVLLDVLDCLGNGNEAVVSYANACLDLVMEHDRDETGALGELGAQVRRRRFYSHNREWLEIVEQE 710
[Close]
BLAST of mRNA_H-elongata_contig4900.12076.1 vs. uniprot
Match: A0A812QE41_SYMMI (KAP115 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QE41_SYMMI)

HSP 1 Score: 148 bits (374), Expect = 6.010e-38
Identity = 80/191 (41.88%), Postives = 115/191 (60.21%), Query Frame = 1 
Query:   13 QVLGTLNNLTALDLPKGIGWVDVLTKYALAPFLTKLLVPGMAQNDVVLEVVILSGVVAQDPKAAVLLAGSRLISTLHDLWSDMSGDTEITLQLLLTLWWLLHTKESREEVLYSTEALTEMLDALDSRHSPTRSMANACMEVVLEFDRKEEGRLGQRGGQVGRRRFASHNREWLRATSQQEEEIEMVFGSRG 585
            +VLGTL NLT LDLP   GW  +L  Y +   +TKLLVPGMAQNDV+LEV+++    A D  +  +LAG+ +I  LH +W D   D EI LQLL         +  +EE +Y T  + +++D L    S  R +A+   E+VLE DR+  G LG+ G ++ ++RF S+N++WL   +  EEE ++  GS G
Sbjct:  238 EVLGTLANLTILDLPMNQGWSKLLGDYNIMSLITKLLVPGMAQNDVLLEVIMIIAQAASDTHSCRMLAGNNIIGLLHQVWKDKGSDVEILLQLLFCFLKFFRQESCQEEAMYGTRVVVDIIDCLHHNSSAVRRIADQVCELVLELDREPTGDLGELGRKIRKKRFDSYNQKWLLEIAA-EEESKLGLGSYG 427
[Close]
BLAST of mRNA_H-elongata_contig4900.12076.1 vs. uniprot
Match: A0A7S1U8D3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8D3_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.160e-36
Identity = 81/175 (46.29%), Postives = 113/175 (64.57%), Query Frame = 1 
Query:   13 QVLGTLNNLTALDLPKGIGWVDVLTKYALAPFLTKLLVPGMAQNDVVLEVVILSGVVAQDPKAAVLLAGSRLISTLHDLWSDMSGDTEITLQLLLTLWWLLHTKESREEVLYSTEALTEMLDALDSRHSPTRSMANACMEVVLEFDRKEEGRLGQRGGQVGRRRFASHNREWLRA 537
            +V+GTL  L+  DLP+   W D++ +Y L  F+ KLLVPGM++ D+ LEVV+  G +A DP+AA LLA S++I  L++L  D   D EI LQLL+    L     +REE+LYST A+ +M++ L S H   R  A+AC++VVLE DR      G  G Q+ +RRF S+NR+WL A
Sbjct:  565 EVIGTLACLSTHDLPRNTSWSDLMHEYQLTSFIIKLLVPGMSEPDMALEVVLFVGQLAMDPEAAPLLASSQVIRCLYELMKDKGDDAEIVLQLLVAFRRLCVHDATREELLYSTRAVVDMMEQLRSEHPRIREAADACLQVVLEADRG-----GSMGQQIRKRRFESYNRKWLEA 734
[Close]
BLAST of mRNA_H-elongata_contig4900.12076.1 vs. uniprot
Match: A0A7S3GZU8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZU8_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.260e-34
Identity = 73/179 (40.78%), Postives = 110/179 (61.45%), Query Frame = 1 
Query:   13 QVLGTLNNLTALDLPKGIGWVDVLTKYALAPFLTKLLVPGMAQNDVVLEVVILSGVVAQDPKAAVLLAGSRLISTLHDLWSDMSGDTEITLQLLLTLWWLLHTKESREEVLYSTEALTEMLDALDSRHSPTRSMANACMEVVLEFDRKEEGRLGQRGGQVGRRRFASHNREWLRATSQQ 549
            +V GTL N+T  DLP    W  +L +Y+L     K+LVPGMAQND++LE+V+L   +A D +A  L+A S LI  L+ LW +   DTE+ LQL+     L     SREE +YST  + +++D L+ R++  R+ A    ++VLEFDR   G LG  G ++ +++F +HN+ WL A  ++
Sbjct:  620 EVFGTLANMTIYDLPASSNWSKLLREYSLLNLFCKMLVPGMAQNDLLLEIVMLVSTIASDLQACNLIASSTLIGQLYQLWEEKGDDTELLLQLIHCFHKLFMHDGSREEAMYSTRIVVDIIDCLNHRNAGVRAKAAIMCDLVLEFDRDATGELGNLGKKILQKQFEAHNKVWLGALQEE 798
[Close]
BLAST of mRNA_H-elongata_contig4900.12076.1 vs. uniprot
Match: A0A8K1C6M2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6M2_PYTOL)

HSP 1 Score: 129 bits (323), Expect = 2.120e-30
Identity = 70/173 (40.46%), Postives = 107/173 (61.85%), Query Frame = 1 
Query:   13 QVLGTLNNLTALDLPKGIGWVDVLTKYALAPFLTKLLVPGMAQNDVVLEVVILSGVVAQDPKAAVLLAGSRLISTLHDLWSDMSGDTEITLQLLLTLWWLLHTKESREEVLYSTEALTEMLDALDSRHSPTRSMANACMEVVLEFDRKEEGRLGQRGGQVGRRRFASHNREWL 531
            +VLGTL N+T  DLP    W  ++    L PFL+KLLVPG +Q+D++LEVV+  G +A +PKAA LL  SRL+ T H L+ +   D E+TLQLL   + LL   E+ +E++Y    + ++L A D+ +   R M +  M+++L+ D   +G +G+ G  + +RRF   N E+L
Sbjct:  433 EVLGTLGNMTPNDLPIKASWDRIIADNNLIPFLSKLLVPGFSQDDMILEVVLFVGALALEPKAAPLLTASRLLRTFHSLFQEKQHDNELTLQLLYAFYRLLRHPETFDEIIYGIGFVPDLLLAADAPNIEVRRMCDVVMDMILDHD-VSQGAIGEFGRLIRQRRFEIQNAEYL 604
[Close]
BLAST of mRNA_H-elongata_contig4900.12076.1 vs. uniprot
Match: A0A8J2SG69_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SG69_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.150e-30
Identity = 68/176 (38.64%), Postives = 105/176 (59.66%), Query Frame = 1 
Query:   13 QVLGTLNNLTALDLPKGIGWVDVLTKYALAPFLTKLLVPGMAQNDVVLEVVILSGVVAQDPKAAVLLAGSRLISTLHDLWSDMSGDTEITLQLLLTLWWLLHTKESREEVLYSTEALTEMLDALDSRHSPTRSMANACMEVVLEFDRKEEGRLGQRGGQVGRRRFASHNREWLRAT 540
            + LG L NLT  DLP+   W D++  + L  FL +LL PG A++DVVLEVV +   +A D  A  ++A S L   L ++W D + D E+ LQLL+    L   K   +E+LY++  L +++D L++ +      A+AC+++V E DR+ +G  G  G QV +RRF S N+ +L+ T
Sbjct:  534 EALGALGNLTQYDLPRATTWKDLVDDHDLCGFLARLLTPGFARHDVVLEVVNVVSAMAADEGAGSVVASSGLARALEEVWRDKADDAEVVLQLLVAYGKLFAFKSVHDELLYNSRVLLDVMDCLENENPVIAHRADACLDLVCEHDRQADGDFGDLGSQVRKRRFQSFNKAYLQKT 709
[Close]
BLAST of mRNA_H-elongata_contig4900.12076.1 vs. uniprot
Match: A0A1V9Z0Y1_9STRA (Kinesin-associated protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z0Y1_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.210e-30
Identity = 69/174 (39.66%), Postives = 111/174 (63.79%), Query Frame = 1 
Query:   13 QVLGTLNNLTALDLPKGIGWVDVLTK-YALAPFLTKLLVPGMAQNDVVLEVVILSGVVAQDPKAAVLLAGSRLISTLHDLWSDMSGDTEITLQLLLTLWWLLHTKESREEVLYSTEALTEMLDALDSRHSPTRSMANACMEVVLEFDRKEEGRLGQRGGQVGRRRFASHNREWL 531
            ++LGTL N+T  DLP    W  +LT+  A+ PFL+KLLV G +Q+DVVL+V++    +  +PK A L+  SR++ + H ++ D   D E+TLQLL   + +L   E+ +++LY    L+++L A DS ++  R M +A ++V+++ D   EG +G+ G Q+ RRRF  HN E+L
Sbjct:  729 EILGTLGNMTPNDLPAKTTWDKLLTQSVAVIPFLSKLLVRGFSQDDVVLQVIMFVSALMLEPKCAPLITSSRIVRSFHLIFQDKQSDCEMTLQLLFCFYRMLRHPETLDDILYGCNMLSDLLLAADSPNNEVRRMCDAVLDVIIDHD-IHEGEVGEFGRQIRRRRFEIHNAEYL 901
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4900.12076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIA4_ECTSI1.830e-10772.11Kinesin-associated protein n=1 Tax=Ectocarpus sili... [more]
A0A836C6Y4_9STRA1.600e-5647.79Kinesin-associated protein n=1 Tax=Tribonema minus... [more]
A0A7S2SW89_9STRA1.320e-4748.89Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
F0XZK9_AURAN1.510e-4449.16Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A812QE41_SYMMI6.010e-3841.88KAP115 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A7S1U8D3_9STRA1.160e-3646.29Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3GZU8_9STRA4.260e-3440.78Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8K1C6M2_PYTOL2.120e-3040.46Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8J2SG69_9STRA2.150e-3038.64Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1V9Z0Y1_9STRA3.210e-3039.66Kinesin-associated protein n=1 Tax=Achlya hypogyna... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4900contigH-elongata_contig4900:78..3881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score340.9
Seed ortholog evalue5.2e-91
Seed eggNOG ortholog2880.D8LIA4
Preferred nameKIFAP3
GOsGO:0000226,GO:0000228,GO:0000793,GO:0000794,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003008,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005783,GO:0005794,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005871,GO:0005875,GO:0005886,GO:0005929,GO:0005930,GO:0006810,GO:0006890,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007163,GO:0007165,GO:0007600,GO:0007605,GO:0007606,GO:0007608,GO:0008088,GO:0008089,GO:0008092,GO:0008104,GO:0008150,GO:0008285,GO:0009987,GO:0010638,GO:0010639,GO:0010941,GO:0010970,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016939,GO:0017111,GO:0019882,GO:0019884,GO:0019886,GO:0019894,GO:0022407,GO:0022409,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030155,GO:0030705,GO:0030951,GO:0030952,GO:0030993,GO:0031344,GO:0031345,GO:0031346,GO:0031503,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032838,GO:0032991,GO:0033036,GO:0033043,GO:0035720,GO:0035735,GO:0035869,GO:0036064,GO:0042073,GO:0042127,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0045724,GO:0045785,GO:0046586,GO:0046587,GO:0046907,GO:0047496,GO:0048002,GO:0048193,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0060271,GO:0060491,GO:0060548,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0071944,GO:0072383,GO:0072384,GO:0072386,GO:0097014,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0098590,GO:0098930,GO:0099111,GO:0099518,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120033,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902018,GO:1902115,GO:1902116,GO:1902117,GO:1902855,GO:1902856,GO:1902857,GO:1905515,GO:1990075
EggNOG free text desc.positive regulation of calcium-dependent cell-cell adhesion
EggNOG OGsKOG1222@1,KOG1222@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKinesin-associated protein
Ec32 orthologEc-24_001410.1
Exons7
Model size762
Cds size762
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930806.3788154-CDS-H-elongata_contig4900:77..2361622930806.3788154-CDS-H-elongata_contig4900:77..236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4900 78..236 +
1691679578.313445-CDS-H-elongata_contig4900:77..2361691679578.313445-CDS-H-elongata_contig4900:77..236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4900 78..236 +
1622930806.4097984-CDS-H-elongata_contig4900:712..7861622930806.4097984-CDS-H-elongata_contig4900:712..786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4900 713..786 +
1691679578.3262348-CDS-H-elongata_contig4900:712..7861691679578.3262348-CDS-H-elongata_contig4900:712..786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4900 713..786 +
1622930806.4257245-CDS-H-elongata_contig4900:950..10561622930806.4257245-CDS-H-elongata_contig4900:950..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4900 951..1056 +
1691679578.3389668-CDS-H-elongata_contig4900:950..10561691679578.3389668-CDS-H-elongata_contig4900:950..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4900 951..1056 +
1622930806.437031-CDS-H-elongata_contig4900:1692..18051622930806.437031-CDS-H-elongata_contig4900:1692..1805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4900 1693..1805 +
1691679578.3473809-CDS-H-elongata_contig4900:1692..18051691679578.3473809-CDS-H-elongata_contig4900:1692..1805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4900 1693..1805 +
1622930806.4536004-CDS-H-elongata_contig4900:2471..25651622930806.4536004-CDS-H-elongata_contig4900:2471..2565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4900 2472..2565 +
1691679578.3551452-CDS-H-elongata_contig4900:2471..25651691679578.3551452-CDS-H-elongata_contig4900:2471..2565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4900 2472..2565 +
1622930806.4684741-CDS-H-elongata_contig4900:3137..32541622930806.4684741-CDS-H-elongata_contig4900:3137..3254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4900 3138..3254 +
1691679578.363297-CDS-H-elongata_contig4900:3137..32541691679578.363297-CDS-H-elongata_contig4900:3137..3254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4900 3138..3254 +
1622930806.4850757-CDS-H-elongata_contig4900:3782..38811622930806.4850757-CDS-H-elongata_contig4900:3782..3881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4900 3783..3881 +
1691679578.3713725-CDS-H-elongata_contig4900:3782..38811691679578.3713725-CDS-H-elongata_contig4900:3782..3881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4900 3783..3881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4900.12076.1prot_H-elongata_contig4900.12076.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4900 78..3881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4900.12076.1

>prot_H-elongata_contig4900.12076.1 ID=prot_H-elongata_contig4900.12076.1|Name=mRNA_H-elongata_contig4900.12076.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
MGTWQVLGTLNNLTALDLPKGIGWVDVLTKYALAPFLTKLLVPGMAQNDV
VLEVVILSGVVAQDPKAAVLLAGSRLISTLHDLWSDMSGDTEITLQLLLT
LWWLLHTKESREEVLYSTEALTEMLDALDSRHSPTRSMANACMEVVLEFD
RKEEGRLGQRGGQVGRRRFASHNREWLRATSQQEEEIEMVFGSRGGESDG
GPLSDSEDQDDMAGSVELSYQGSGGRRSSPRRGASASDPSGIGDDLSWPT
GWE*
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mRNA from alignment at H-elongata_contig4900:78..3881+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4900.12076.1 ID=mRNA_H-elongata_contig4900.12076.1|Name=mRNA_H-elongata_contig4900.12076.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3804bp|location=Sequence derived from alignment at H-elongata_contig4900:78..3881+ (Himanthalia elongata Himel1 dioecious)
ATGGGCACCTGGCAGGTACTAGGAACACTTAATAACCTCACGGCGCTCGA
TCTCCCGAAGGGGATTGGATGGGTTGATGTTCTCACAAAATACGCGCTGG
CACCGTTCCTGACGAAGTTGCTTGTCCCCGGCATGGCGCAGAATGACGTC
GTGCTAGAGGTGAGCCCTGCACAACAGACCGAGCAAGTACAAAAACTCTT
CCGATGACCATACGGTTTCCGGAAATGCGAAAGAACACTAGTTATTATTT
CCCTGCTGAGCAAACCTCGTTGTTTGTCTATCACGGAAAGCCGAGGTGAA
ACCTTCCAGTGGGGTTACCGAGAGCCCACCAAACTTGGAAGAGTAAGACA
ACACGAGAGTTTCCCCTATCCTTTGTCGTGGATGAGATTGATCTTGGTAC
CGCTTGTCAGATGGGTGTGTTGATCTTCGTTTGCGTTACCGGGGTGGAAG
ACCGGATCTGTAGCGGATTGTGTTTTTTATTTGGGTAAGGCTCTCTCACT
ATAGGCTGCAACATCGCTTTTACAGAAATAGAAATCGGAGACCACCGAGG
TAAGGACAGAAGATTCACCGCCGACTAGGTTCCTTCCTTCCTTCATTTCT
TCTTTTGTGTGCCTTTGTCTCCACGCTATTATTAGGTGGTTATCCTGAGC
GGGGTCGTGGCGCAAGACCCCAAGGCGGCAGTGTTGCTGGCAGGCTCCAG
GCTCATCAGGTACGTGGCGGACTCTCACGAGAGCCGGCTTTGTGAGCGCA
GAGCTCTGCAAACACAGTCTCTTGAGATTTAGCGTAGCGCGCACGGCACC
ACGGATGTCCTTTGGCGACCGTCCACAACATGCTGCCGTGTCTCTATCCC
ATATGCCCCCCTTTGCGTGCCAGCACTCTGCACGACCTGTGGTCGGACAT
GTCTGGGGACACCGAGATCACCCTGCAACTTCTTCTGACGCTGTGGTGGC
TCCTCCACACCAAGGAGTCCAGAGAAGAGGTAGGGGTGCCCGGATGAATG
CTTTCTGCTCGCCTCGCGACAGTCACGGCAGGCGATGGTGACAGAGTTGA
CAGCGTATCCAGACGCGTCTACAATCTGGGACACGCCGCGCTACTACTAG
AGCGAGAGAGCAATTCTGCATGTGCCCATCCTTATCATCATCCCCCCTTC
ATGACCCAACAGCAAAGGAATGCAAAACTTGACCCCCCCCCCCAAGTCGA
AAGCCATCGAAAGTTGACACTACCATAAAAATCGGAGAAATACCTCCTTC
CCCCTCCCCCGGGGACATACTCTACACTCCCTTCCTTTCTTTTCTCCACA
GCGATGCTTGTAAACGTGTATGAATAACAATGCAGCGTTTGAGATATGCT
AAGGAGTTTTCAAGAAGGTGCCCTTTTTTCTGCGCTAATGCTCTAATATT
TTCTCTTGAAAAAGATACTTGAGTTTGGTACACAATGTTCAGCGGCAGTA
CCCTTTTCCTAATTTGCTGAGAAACGTGGATAGGGACAGGGGTGGGGGTT
ATGTCTATTCACATGAGATGAGAGGGTGTCCTCCTCTTCGAGAAAAGAAA
TGGCACACATGCACGGCAAAATAAGCCGCCCCATAAGTTCCCGCTCCCGC
GGTGCTTTTGCGTAGGTTCTGTACAGCACGGAGGCATTAACGGAGATGTT
AGACGCCCTAGACAGTCGACACTCGCCTACGAGAAGTATGGCCAACGCTT
GCATGGAAGTCGTTCTGGAATTCGACCGGTACGGATAAGCCAGCGTCATC
ATCAGCCCAATAATGCTCACAGTGCGATCCGTTTAACGCTGACTAAAGAA
GCAATTAACCTGCCCGACTTATCTTGTTTTTCATATCGCTCTTTCTCCAC
TTCTCAACCGAAATATCTCCTCTCAACTGATGTGTATACCGTAGCAGTGC
GCCCAACCAGTGAAATATATCGTGACGGTCGTAGGCACCGATCTCAGGAC
TTGGGGCATGTTTTTCAGCGACGTTTGGCATCGAATAACATACACTCCGA
ATTGCATTGTGGGTACCCTTCGGTCAAGACTCGTTAAAGTTCTCACAGGC
ATCGAACCTCGAGCGGGGACGCAAATGAGTCCGTCTCTGTCATTTTAACA
TCATCCGCCCCTCTCGTCGAGGGACGCTCGGCTAAGATCCTATACTCGGG
AAAGACGGAAGACTTACCCCCCACTCCGCACGTAGTAGGGTAAAGCTGAG
ATGTCGCGAAGACGCTCGTGTACCCCTCTTTTTGTATCGATTGGCCGATG
ATCCAGCCTACCGGCTTGAACGTTCGGTTAAGGGAACCTGAATCCTCACG
CAGCTAGACTTCACTCTTGGGAAGGGAAGGGGGGGGGGGGGGGGAGCGGA
CAGAAACGAACGACTGATCTCGCTTTGAAATCGAAAAGGAACAGGAAAGA
AGAGGGCCGACTTGGGCAAAGGGGGGGGCAGGTAGGAAGGAGAAGGTTTG
CTTCTCACAACAGGGAGTGGCTGCGTGCGACGTCTCAGGTACGCCAGTAG
GTCGCAAACTTAAGAGGAGGCAATGTGGCAGGGGAGAGTAAGAGATCGAT
TCAAATGGGGTCTGGCGGATGTTGTTTGAGGTCGGATCCGGGATCCGCTT
TCCAGAACAAAGGAGATACAGTGAAAAACCAACTCGCATGTGGGAGAGAG
AGATAAAATGTTAACGGTGCCCTTTTCCTGCCAATCCCCCCCCCCACCCC
GAACAGTTGGTCAAATATTACATATTTAATTTCGTTATACACAGGGGTTA
TTATGCATGTAAACTCACTGGCTGAGCCTGATGGGCGTGGCTTCAGGATT
TTCCGGTACACTGTACTGTGCCTTGCGGGTAATCGATCGTGTAGTACGGT
ACATGTATCGAAACAATGTTCGGATCGACGGCTCTAAGGGAGAGCTTAAG
GGCATCGTAGTTGAACCACACGATTGAGGAAGATGTCGATACACGAGACG
AGCCTGCGGGCTCAGGTGCTCTCCATCCACGCGCCAAACAACTCGGCAGG
ATCTCCCGTTGAATTTTACAAAGTAGTATAGTTATGACGATCGCACCTTC
CTCGTTTCAGCAGGAGGAGGAAATAGAGATGGTGTTCGGATCAAGAGGAG
GAGAGTCAGATGGGGGGCCATTGAGCGACTCCGAAGACCAAGACGATATG
GCCGGGAGCGTAGAGCTGAGTTATCAGGTATTGACGGACTTGGGCTCTAA
ACGGTGGACAGCCGGCACGCGGAAAAGGATCACGGCCGTATACGCTGCCG
ACATTTACCACCATAAACTGCGTTGCAAAGCCCCGCTTGTCAATATACTG
TTGCTGGGCTTATTGATAATTCCTCCCTTCAGCATTAAACTACCTGAATT
GATTGGTGCTCGAGTATCACCTCACGGAGCTTTCCCACCGCTGTGCATTC
GCCCCCCGCCCCCCCCCCCCCCCCTATCTACCTATGTGTATAGTGCAAAC
GAATTTAACGTTTTAAAATGTATACCTCTCCGACTACTTCTCATATACAA
CCACACCAACGTTTACAGTTTCCCAGGCCCATATGGCAGCTGCCCGTCGA
AGCGGGAAGTGTTTGTTGTCAATGTTTCTGTCTCTTGAGGGCGTGCTCGC
GGCCCGCGCACCGCCTGCTGCGTCCGCTGTGAATAAGAATAAGACAAACA
AAAACCTACGACATGTCTAAAGGTTGAAGTTGATTGACTGATTGACTGCT
GGCAGGGTTCGGGAGGGAGACGATCAAGCCCCAGAAGAGGAGCGAGCGCG
AGCGATCCTAGCGGCATCGGCGACGATCTGTCGTGGCCTACCGGATGGGA
GTAA
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Coding sequence (CDS) from alignment at H-elongata_contig4900:78..3881+

>mRNA_H-elongata_contig4900.12076.1 ID=mRNA_H-elongata_contig4900.12076.1|Name=mRNA_H-elongata_contig4900.12076.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig4900:78..3881+ (Himanthalia elongata Himel1 dioecious)
ATGGGCACCTGGCAGGTACTAGGAACACTTAATAACCTCACGGCGCTCGA
TCTCCCGAAGGGGATTGGATGGGTTGATGTTCTCACAAAATACGCGCTGG
CACCGTTCCTGACGAAGTTGCTTGTCCCCGGCATGGCGCAGAATGACGTC
GTGCTAGAGATGGGCACCTGGCAGGTACTAGGAACACTTAATAACCTCAC
GGCGCTCGATCTCCCGAAGGGGATTGGATGGGTTGATGTTCTCACAAAAT
ACGCGCTGGCACCGTTCCTGACGAAGTTGCTTGTCCCCGGCATGGCGCAG
AATGACGTCGTGCTAGAGGTGGTTATCCTGAGCGGGGTCGTGGCGCAAGA
CCCCAAGGCGGCAGTGTTGCTGGCAGGCTCCAGGCTCATCAGGTGGTTAT
CCTGAGCGGGGTCGTGGCGCAAGACCCCAAGGCGGCAGTGTTGCTGGCAG
GCTCCAGGCTCATCAGCACTCTGCACGACCTGTGGTCGGACATGTCTGGG
GACACCGAGATCACCCTGCAACTTCTTCTGACGCTGTGGTGGCTCCTCCA
CACCAAGGAGTCCAGAGAAGAGCACTCTGCACGACCTGTGGTCGGACATG
TCTGGGGACACCGAGATCACCCTGCAACTTCTTCTGACGCTGTGGTGGCT
CCTCCACACCAAGGAGTCCAGAGAAGAGGTTCTGTACAGCACGGAGGCAT
TAACGGAGATGTTAGACGCCCTAGACAGTCGACACTCGCCTACGAGAAGT
ATGGCCAACGCTTGCATGGAAGTCGTTCTGGAATTCGACCGGTTCTGTAC
AGCACGGAGGCATTAACGGAGATGTTAGACGCCCTAGACAGTCGACACTC
GCCTACGAGAAGTATGGCCAACGCTTGCATGGAAGTCGTTCTGGAATTCG
ACCGGAAAGAAGAGGGCCGACTTGGGCAAAGGGGGGGGCAGGTAGGAAGG
AGAAGGTTTGCTTCTCACAACAGGGAGTGGCTGCGTGCGACGTCTCAGGA
AAGAAGAGGGCCGACTTGGGCAAAGGGGGGGGCAGGTAGGAAGGAGAAGG
TTTGCTTCTCACAACAGGGAGTGGCTGCGTGCGACGTCTCAGCAGGAGGA
GGAAATAGAGATGGTGTTCGGATCAAGAGGAGGAGAGTCAGATGGGGGGC
CATTGAGCGACTCCGAAGACCAAGACGATATGGCCGGGAGCGTAGAGCTG
AGTTATCAGCAGGAGGAGGAAATAGAGATGGTGTTCGGATCAAGAGGAGG
AGAGTCAGATGGGGGGCCATTGAGCGACTCCGAAGACCAAGACGATATGG
CCGGGAGCGTAGAGCTGAGTTATCAGGGTTCGGGAGGGAGACGATCAAGC
CCCAGAAGAGGAGCGAGCGCGAGCGATCCTAGCGGCATCGGCGACGATCT
GTCGTGGCCTACCGGATGGGAGTAAGGTTCGGGAGGGAGACGATCAAGCC
CCAGAAGAGGAGCGAGCGCGAGCGATCCTAGCGGCATCGGCGACGATCTG
TCGTGGCCTACCGGATGGGAGTAA
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