mRNA_H-elongata_contig48987.12071.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 2.220e-15 Identity = 51/109 (46.79%), Postives = 61/109 (55.96%), Query Frame = 1
Query: 1 RFDICRGPQYFSAADI----ARRPYLNNVVPVSPLQFQDDE-----------RNTD-DGRGYRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
R + RG QYFS R L NVVP+SP+ DD NT+ GR R+Q+PL LAF +TIHKSQG TL R +DIG+ E +DG TFTALS R
Sbjct: 1499 RVENYRGEQYFSEPLERPWGGRVVDLRNVVPISPIDAPDDHPPAALRRRGGGANTNAQGRCIRTQLPLMLAFGITIHKSQGATLLRCFLDIGEQEKSDGQTFTALSRCR 1607
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A813YP59_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813YP59_9BILA) HSP 1 Score: 77.8 bits (190), Expect = 4.240e-15 Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 4 FDICRGPQYFSAADIARRPYLNNVVPVSPLQFQDDERNTDDGRGYRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
F GPQ+F + P N++P++P+ F N R+QIP+ L + MTIHKSQG TL +A+ID+GKSE + GLTF ALS ++
Sbjct: 165 FSEYSGPQFFDDDE----PEKKNIIPINPISFYCKTVNAT-----RTQIPIRLGYGMTIHKSQGQTLTKAIIDLGKSEKSLGLTFVALSRLK 247
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A6H5KGT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT1_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 1.320e-14 Identity = 46/107 (42.99%), Postives = 60/107 (56.07%), Query Frame = 1
Query: 1 RFDICRGPQYFSAADIARRPY------LNNVVPVSPLQFQDDERNTDDGRG--------YRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
R + RGPQYF RR + L N+ P++P+ DD+ T RG +R Q+PL LAF +TI+KSQG TL R +DIG SE +DG +FTA S R
Sbjct: 130 RVENYRGPQYFEQP--LRRDWADGEIDLTNLCPIAPMDVMDDQPPTGRRRGDGTSIARCFRMQLPLMLAFGITIYKSQGNTLLRCFLDIGASERSDGQSFTAFSRCR 234
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A6H5K558_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K558_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 1.420e-14 Identity = 46/107 (42.99%), Postives = 60/107 (56.07%), Query Frame = 1
Query: 1 RFDICRGPQYFSAADIARRPY------LNNVVPVSPLQFQDDERNTDDGRG--------YRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
R + RGPQYF RR + L N+ P++P+ DD+ T RG +R Q+PL LAF +TI+KSQG TL R +DIG SE +DG +FTA S R
Sbjct: 689 RVENYRGPQYFEQP--LRRDWADGEIDLTNLCPIAPMDVMDDQPPTGRRRGDGTSIARCFRMQLPLMLAFGITIYKSQGNTLLRCFLDIGASERSDGQSFTAFSRCR 793
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A813ZB01_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813ZB01_9BILA) HSP 1 Score: 71.2 bits (173), Expect = 4.900e-14 Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 70 NVVPVSPLQFQDDERNTDDGRGYRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
N +P++P+ + N R+Q PL LA+ +TIHKSQG T+D+A ID+GK ET+ GLTF ALS+++
Sbjct: 4 NWIPINPINVYNHVTNF-----VRTQFPLRLAYALTIHKSQGQTIDKAAIDLGKKETSLGLTFVALSMLK 68
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A6H5KDL6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL6_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 8.820e-14 Identity = 45/107 (42.06%), Postives = 59/107 (55.14%), Query Frame = 1
Query: 1 RFDICRGPQYFSAADIARRPY------LNNVVPVSPLQFQDDERNTDDGRG--------YRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
R + RGPQYF RR + L N+ P++P+ DD+ T RG +R Q+PL LAF +TI+KS G TL R +DIG SE +DG +FTA S R
Sbjct: 285 RVENYRGPQYFEQP--LRRDWADGEIDLTNLCPIAPMDVMDDQPPTGRRRGDGTSIARCFRMQLPLMLAFGITIYKSHGNTLLRCSLDIGASERSDGQSFTAFSRCR 389
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A814LJU9_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814LJU9_9BILA) HSP 1 Score: 72.8 bits (177), Expect = 2.290e-13 Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 1
Query: 19 GPQYFSAADIARRPYLNNVVPVSPLQFQDDERNTDDGRGYRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
GPQ+F D +N +P++P+ + + G R+Q+P+ L + MTIHKSQG TL +AVID+G SE + GLTF ALS ++
Sbjct: 143 GPQFFDDLD------KHNYIPINPISIFAKQAS-----GTRTQLPIRLGYAMTIHKSQGQTLKKAVIDLGNSEISLGLTFVALSRLK 218
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A1X7SFP1_AMPQE (Herpes_Helicase domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFP1_AMPQE) HSP 1 Score: 69.3 bits (168), Expect = 9.840e-13 Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1
Query: 67 NNVVPVSPLQFQDDERNTDDGRGYRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
+ VP++P++ ++ G+ R Q+PL LA+ +TIHKSQG+TLD+ VID+GK E + GLTF A S VR
Sbjct: 59 DGTVPITPIRHN---WSSSGGQCSRLQLPLKLAWAVTIHKSQGLTLDKVVIDVGKKEFSCGLTFVACSRVR 126
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: M1WIR5_CLAP2 (Herpes_Helicase domain-containing protein n=2 Tax=Claviceps purpurea (strain 20.1) TaxID=1111077 RepID=M1WIR5_CLAP2) HSP 1 Score: 68.2 bits (165), Expect = 1.160e-12 Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 1
Query: 1 RFDICRGPQYFSAADIARRPYLNNVVPVSPLQFQDDERNTDDGRGY-RSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
RFD GP Y+ A P VVP+ F+ + R+ + R R+Q PLT+A+ +T+HKSQG TLDRAV+D+ + + GL++ A+S V+
Sbjct: 3 RFDSYTGPPYYPDA-----PDRATVVPI----FRHESRHFFERRPCTRTQFPLTVAYAITVHKSQGTTLDRAVVDVSTKDFSPGLSYVAVSRVK 87
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A7D9IAC3_PARCT (ATP-dependent DNA helicase pif1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IAC3_PARCT) HSP 1 Score: 68.6 bits (166), Expect = 1.380e-12 Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 1 RFDICRGPQYFSAADIARRPYLNNVVPVSPLQFQDDERNTDDGRGYRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
+FD GP + S + ++VP++P+ N D R Q+PLTLA+ +TIHKSQGMTL +A IDIGK ET G+ + A+S R
Sbjct: 57 KFDDYCGPSFAS---------IPSIVPITPVTATV---NVQDSILERRQLPLTLAWALTIHKSQGMTLKKAWIDIGKRETTLGMMYVAISRAR 137 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48987.12071.1 >prot_H-elongata_contig48987.12071.1 ID=prot_H-elongata_contig48987.12071.1|Name=mRNA_H-elongata_contig48987.12071.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp RFDICRGPQYFSAADIARRPYLNNVVPVSPLQFQDDERNTDDGRGYRSQIback to top mRNA from alignment at H-elongata_contig48987:2613..3236+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48987.12071.1 ID=mRNA_H-elongata_contig48987.12071.1|Name=mRNA_H-elongata_contig48987.12071.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=624bp|location=Sequence derived from alignment at H-elongata_contig48987:2613..3236+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48987:2613..3236+ >mRNA_H-elongata_contig48987.12071.1 ID=mRNA_H-elongata_contig48987.12071.1|Name=mRNA_H-elongata_contig48987.12071.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig48987:2613..3236+ (Himanthalia elongata Himel1 dioecious)back to top |