mRNA_H-elongata_contig48987.12071.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48987.12071.1
Unique NamemRNA_H-elongata_contig48987.12071.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.220e-15
Identity = 51/109 (46.79%), Postives = 61/109 (55.96%), Query Frame = 1
Query:    1 RFDICRGPQYFSAADI----ARRPYLNNVVPVSPLQFQDDE-----------RNTD-DGRGYRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
            R +  RG QYFS         R   L NVVP+SP+   DD             NT+  GR  R+Q+PL LAF +TIHKSQG TL R  +DIG+ E +DG TFTALS  R
Sbjct: 1499 RVENYRGEQYFSEPLERPWGGRVVDLRNVVPISPIDAPDDHPPAALRRRGGGANTNAQGRCIRTQLPLMLAFGITIHKSQGATLLRCFLDIGEQEKSDGQTFTALSRCR 1607          
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A813YP59_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813YP59_9BILA)

HSP 1 Score: 77.8 bits (190), Expect = 4.240e-15
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    4 FDICRGPQYFSAADIARRPYLNNVVPVSPLQFQDDERNTDDGRGYRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
            F    GPQ+F   +    P   N++P++P+ F     N       R+QIP+ L + MTIHKSQG TL +A+ID+GKSE + GLTF ALS ++
Sbjct:  165 FSEYSGPQFFDDDE----PEKKNIIPINPISFYCKTVNAT-----RTQIPIRLGYGMTIHKSQGQTLTKAIIDLGKSEKSLGLTFVALSRLK 247          
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A6H5KGT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT1_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.320e-14
Identity = 46/107 (42.99%), Postives = 60/107 (56.07%), Query Frame = 1
Query:    1 RFDICRGPQYFSAADIARRPY------LNNVVPVSPLQFQDDERNTDDGRG--------YRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
            R +  RGPQYF      RR +      L N+ P++P+   DD+  T   RG        +R Q+PL LAF +TI+KSQG TL R  +DIG SE +DG +FTA S  R
Sbjct:  130 RVENYRGPQYFEQP--LRRDWADGEIDLTNLCPIAPMDVMDDQPPTGRRRGDGTSIARCFRMQLPLMLAFGITIYKSQGNTLLRCFLDIGASERSDGQSFTAFSRCR 234          
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A6H5K558_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K558_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.420e-14
Identity = 46/107 (42.99%), Postives = 60/107 (56.07%), Query Frame = 1
Query:    1 RFDICRGPQYFSAADIARRPY------LNNVVPVSPLQFQDDERNTDDGRG--------YRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
            R +  RGPQYF      RR +      L N+ P++P+   DD+  T   RG        +R Q+PL LAF +TI+KSQG TL R  +DIG SE +DG +FTA S  R
Sbjct:  689 RVENYRGPQYFEQP--LRRDWADGEIDLTNLCPIAPMDVMDDQPPTGRRRGDGTSIARCFRMQLPLMLAFGITIYKSQGNTLLRCFLDIGASERSDGQSFTAFSRCR 793          
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A813ZB01_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813ZB01_9BILA)

HSP 1 Score: 71.2 bits (173), Expect = 4.900e-14
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   70 NVVPVSPLQFQDDERNTDDGRGYRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
            N +P++P+   +   N       R+Q PL LA+ +TIHKSQG T+D+A ID+GK ET+ GLTF ALS+++
Sbjct:    4 NWIPINPINVYNHVTNF-----VRTQFPLRLAYALTIHKSQGQTIDKAAIDLGKKETSLGLTFVALSMLK 68          
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A6H5KDL6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 8.820e-14
Identity = 45/107 (42.06%), Postives = 59/107 (55.14%), Query Frame = 1
Query:    1 RFDICRGPQYFSAADIARRPY------LNNVVPVSPLQFQDDERNTDDGRG--------YRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
            R +  RGPQYF      RR +      L N+ P++P+   DD+  T   RG        +R Q+PL LAF +TI+KS G TL R  +DIG SE +DG +FTA S  R
Sbjct:  285 RVENYRGPQYFEQP--LRRDWADGEIDLTNLCPIAPMDVMDDQPPTGRRRGDGTSIARCFRMQLPLMLAFGITIYKSHGNTLLRCSLDIGASERSDGQSFTAFSRCR 389          
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A814LJU9_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814LJU9_9BILA)

HSP 1 Score: 72.8 bits (177), Expect = 2.290e-13
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   19 GPQYFSAADIARRPYLNNVVPVSPLQFQDDERNTDDGRGYRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
            GPQ+F   D       +N +P++P+     + +     G R+Q+P+ L + MTIHKSQG TL +AVID+G SE + GLTF ALS ++
Sbjct:  143 GPQFFDDLD------KHNYIPINPISIFAKQAS-----GTRTQLPIRLGYAMTIHKSQGQTLKKAVIDLGNSEISLGLTFVALSRLK 218          
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A1X7SFP1_AMPQE (Herpes_Helicase domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFP1_AMPQE)

HSP 1 Score: 69.3 bits (168), Expect = 9.840e-13
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   67 NNVVPVSPLQFQDDERNTDDGRGYRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
            +  VP++P++      ++  G+  R Q+PL LA+ +TIHKSQG+TLD+ VID+GK E + GLTF A S VR
Sbjct:   59 DGTVPITPIRHN---WSSSGGQCSRLQLPLKLAWAVTIHKSQGLTLDKVVIDVGKKEFSCGLTFVACSRVR 126          
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: M1WIR5_CLAP2 (Herpes_Helicase domain-containing protein n=2 Tax=Claviceps purpurea (strain 20.1) TaxID=1111077 RepID=M1WIR5_CLAP2)

HSP 1 Score: 68.2 bits (165), Expect = 1.160e-12
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    1 RFDICRGPQYFSAADIARRPYLNNVVPVSPLQFQDDERNTDDGRGY-RSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
            RFD   GP Y+  A     P    VVP+    F+ + R+  + R   R+Q PLT+A+ +T+HKSQG TLDRAV+D+   + + GL++ A+S V+
Sbjct:    3 RFDSYTGPPYYPDA-----PDRATVVPI----FRHESRHFFERRPCTRTQFPLTVAYAITVHKSQGTTLDRAVVDVSTKDFSPGLSYVAVSRVK 87          
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Match: A0A7D9IAC3_PARCT (ATP-dependent DNA helicase pif1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IAC3_PARCT)

HSP 1 Score: 68.6 bits (166), Expect = 1.380e-12
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 1
Query:    1 RFDICRGPQYFSAADIARRPYLNNVVPVSPLQFQDDERNTDDGRGYRSQIPLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR 279
            +FD   GP + S         + ++VP++P+       N  D    R Q+PLTLA+ +TIHKSQGMTL +A IDIGK ET  G+ + A+S  R
Sbjct:   57 KFDDYCGPSFAS---------IPSIVPITPVTATV---NVQDSILERRQLPLTLAWALTIHKSQGMTLKKAWIDIGKRETTLGMMYVAISRAR 137          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48987.12071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K692_9PHAE2.220e-1546.79ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A813YP59_9BILA4.240e-1543.48Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A6H5KGT1_9PHAE1.320e-1442.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K558_9PHAE1.420e-1442.99ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A813ZB01_9BILA4.900e-1447.14Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A6H5KDL6_9PHAE8.820e-1442.06ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A814LJU9_9BILA2.290e-1342.53Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A1X7SFP1_AMPQE9.840e-1347.89Herpes_Helicase domain-containing protein n=1 Tax=... [more]
M1WIR5_CLAP21.160e-1240.43Herpes_Helicase domain-containing protein n=2 Tax=... [more]
A0A7D9IAC3_PARCT1.380e-1241.94ATP-dependent DNA helicase pif1 n=1 Tax=Paramurice... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48987contigH-elongata_contig48987:2613..3236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.9
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog400682.PAC_15699109
EggNOG free text desc.Helicase
EggNOG OGs39K8F@33154,3C3GY@33208,COG0507@1,KOG0987@2759
COG Functional cat.D
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size281
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48987.12071.1prot_H-elongata_contig48987.12071.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48987 2613..3235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930805.827707-CDS-H-elongata_contig48987:2612..27081622930805.827707-CDS-H-elongata_contig48987:2612..2708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48987 2613..2708 +
1691679578.0720968-CDS-H-elongata_contig48987:2612..27081691679578.0720968-CDS-H-elongata_contig48987:2612..2708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48987 2613..2708 +
1622930805.844902-CDS-H-elongata_contig48987:2906..29791622930805.844902-CDS-H-elongata_contig48987:2906..2979Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48987 2907..2979 +
1691679578.0821574-CDS-H-elongata_contig48987:2906..29791691679578.0821574-CDS-H-elongata_contig48987:2906..2979Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48987 2907..2979 +
1622930805.866998-CDS-H-elongata_contig48987:3125..32351622930805.866998-CDS-H-elongata_contig48987:3125..3235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48987 3126..3235 +
1691679578.0917323-CDS-H-elongata_contig48987:3125..32351691679578.0917323-CDS-H-elongata_contig48987:3125..3235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48987 3126..3235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48987.12071.1

>prot_H-elongata_contig48987.12071.1 ID=prot_H-elongata_contig48987.12071.1|Name=mRNA_H-elongata_contig48987.12071.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
RFDICRGPQYFSAADIARRPYLNNVVPVSPLQFQDDERNTDDGRGYRSQI
PLTLAFEMTIHKSQGMTLDRAVIDIGKSETADGLTFTALSLVR
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mRNA from alignment at H-elongata_contig48987:2613..3236+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48987.12071.1 ID=mRNA_H-elongata_contig48987.12071.1|Name=mRNA_H-elongata_contig48987.12071.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=624bp|location=Sequence derived from alignment at H-elongata_contig48987:2613..3236+ (Himanthalia elongata Himel1 dioecious)
CGGTTCGACATATGTCGGGGCCCACAGTACTTTTCCGCTGCGGATATCGC CAGGAGACCTTATTTGAACAACGTCGTCCCCGTCTCTCCATTACAGGTGG GGATAGGCTATATATTTAATTCCTTTTTTAAATAGTTTGTTTCTCGTGAT ATACTTGTTCGTTTTTACCCCGGACATATACTTTATTTATTGTTTGAGCA TTAAAACATTTCACCGATTAAATACTTATGTTGGTGTCATTTTTGTTTCT CTCATATTGCATCGATTGCACTCGGTTGTTTTCAAACTTTGCAGTTTCAG GACGACGAGCGTAATACCGACGATGGACGCGGATATCGATCCCAGATACC GCTCACGTTGGCATTTGGTGAGACTATAACTATACTTTCATATCTTACTC GTTTATACTTACTAAATAACATGTTAATAATACTCTTGTTCTAAATATCT CTCTTGTACTTTTAAATCTTACATGACTTGCCTTGTTGCCTTTCTTGCAA CATCTATTCGCAGAGATGACTATTCACAAGAGTCAGGGCATGACATTGGA TAGAGCTGTTATCGACATCGGCAAATCAGAGACTGCGGATGGCCTCACGT TCACCGCATTGAGTCTTGTCCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig48987:2613..3236+

>mRNA_H-elongata_contig48987.12071.1 ID=mRNA_H-elongata_contig48987.12071.1|Name=mRNA_H-elongata_contig48987.12071.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig48987:2613..3236+ (Himanthalia elongata Himel1 dioecious)
CGGTTCGACATATGTCGGGGCCCACAGTACTTTTCCGCTGCGGATATCGC
CAGGAGACCTTATTTGAACAACGTCGTCCCCGTCTCTCCATTACAGCGGT
TCGACATATGTCGGGGCCCACAGTACTTTTCCGCTGCGGATATCGCCAGG
AGACCTTATTTGAACAACGTCGTCCCCGTCTCTCCATTACAGTTTCAGGA
CGACGAGCGTAATACCGACGATGGACGCGGATATCGATCCCAGATACCGC
TCACGTTGGCATTTGTTTCAGGACGACGAGCGTAATACCGACGATGGACG
CGGATATCGATCCCAGATACCGCTCACGTTGGCATTTGAGATGACTATTC
ACAAGAGTCAGGGCATGACATTGGATAGAGCTGTTATCGACATCGGCAAA
TCAGAGACTGCGGATGGCCTCACGTTCACCGCATTGAGTCTTGTCCGTAG
ATGACTATTCACAAGAGTCAGGGCATGACATTGGATAGAGCTGTTATCGA
CATCGGCAAATCAGAGACTGCGGATGGCCTCACGTTCACCGCATTGAGTC
TTGTCCGT
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