mRNA_H-elongata_contig11517.1207.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11517.1207.1
Unique NamemRNA_H-elongata_contig11517.1207.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11517.1207.1 vs. uniprot
Match: D7FRY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRY1_ECTSI)

HSP 1 Score: 351 bits (900), Expect = 1.000e-118
Identity = 183/222 (82.43%), Postives = 196/222 (88.29%), Query Frame = 3 
Query:  105 PQAEVSEHPVLQHKLALIRHQEGTAKEFRALFREITFYLGYEATRDLTTRKISVKTDVVEKCPARKIAEKVAVVPILRGGLGMTEALLELLPESPVYHVGMYRNPGSNIPVQYYNRLPKGNPSDVALILDPIIASSRTITAVVSMVKKWGAKKIKVVTLVASRSGLEVLCKMHPEVQVYLASIDELAENGLDLVPGIGDAGDRLYLGAHVKDIDIDIAPSSD 770
            PQA VS+HPVLQHKLALIR QEGTAK+FR LFREITFYLGYEAT  LTT  I VKTD  ++CPA+ IAE VAVVPILRGGLGMTEALLELLP+SPVYHVGMYRNPGSNIPVQYYNRLPKG+PSDVALILDPIIASSRTI AVVS+VKKWGAK IKVVTLVASRSGLE L KMHPEVQV+LASIDELA NG DL+PGIGDAGDRLYLG +     ++ AP SD
Sbjct:    7 PQALVSQHPVLQHKLALIRRQEGTAKDFRTLFREITFYLGYEATATLTTTSICVKTDRTDQCPAKTIAETVAVVPILRGGLGMTEALLELLPDSPVYHVGMYRNPGSNIPVQYYNRLPKGHPSDVALILDPIIASSRTINAVVSIVKKWGAKTIKVVTLVASRSGLEALNKMHPEVQVHLASIDELAPNGQDLIPGIGDAGDRLYLGTN----SLETAPPSD 224
[Close]
BLAST of mRNA_H-elongata_contig11517.1207.1 vs. uniprot
Match: A0A835YL27_9STRA (Uracil phosphoribosyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL27_9STRA)

HSP 1 Score: 298 bits (763), Expect = 1.450e-97
Identity = 149/233 (63.95%), Postives = 187/233 (80.26%), Query Frame = 3 
Query:   48 ASKGAPTAAEDCSKDT-TAPPQAEVSEHPVLQHKLALIRHQEGTAKEFRALFREITFYLGYEATRDLTTRKISVKTDVVEKCPARKIAEKVAVVPILRGGLGMTEALLELLPESPVYHVGMYRNPGSNIPVQYYNRLPKGNPSDVALILDPIIASSRTITAVVSMVKKWGAKKIKVVTLVASRSGLEVLCKMHPEVQVYLASIDELAENGLDLVPGIGDAGDRLYLGA-HVKD 740
            A+ G P AAE+ + D  T PP  +VS HPVL HKL+LIR +   ++EFR+LFREI+FYLGYEAT+DL T+   + T   E C  RKIA+KVAV+PILRGGLGMT+A+LELLP +PVYH+GMYRNPGS++P+QYYNRLPKG   DVA++LDPIIAS++TI A VS++KKWGA ++KVVTL+ SR+GL  L  +HP+V V+ A++D LA+NG DLVPGIGDAGDRLYLG  HV D
Sbjct:    3 AANGHPAAAENDADDGYTPPPGVQVSSHPVLMHKLSLIRRKSTNSREFRSLFREISFYLGYEATQDLHTKVAHIHTHTAEFCEVRKIADKVAVIPILRGGLGMTDAMLELLPNAPVYHIGMYRNPGSSMPIQYYNRLPKGQSCDVAILLDPIIASAKTICATVSIIKKWGAARVKVVTLIVSRTGLAQLLAVHPDVIVHCAAVDTLADNGHDLVPGIGDAGDRLYLGPDHVDD 235
[Close]
BLAST of mRNA_H-elongata_contig11517.1207.1 vs. uniprot
Match: A0A5D6XMY6_9STRA (Uracil phosphoribosyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMY6_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.430e-62
Identity = 112/214 (52.34%), Postives = 151/214 (70.56%), Query Frame = 3 
Query:  102 PPQAEV--SEHPVLQHKLALIRHQEGTAKEFRALFREITFYLGYEATRDLTTRKISVKTDVVEKCPARKIAEKVAVVPILRGGLGMTEALLELLPESPVYHVGMYRNPGSNIPVQYYNRLPKGNPSDVALILDPIIASSRTITAVVSMVKKWGAKKIKVVTLVASRSGLEVLCKMHPEVQVYLASID-ELAENGLDLVPGIGDAGDRLY-LGAH 731
            PP  EV  ++HPVL HKL  +R +   +  FR + RE+TFYLGYEAT DL T   ++KT +     A ++  KVAVVPILR GLGM E +L+LLP + V+H+GMYRN  S +PVQYYN+LPK    DVA++L+P+IA++ TI A V+++K WG  KIK+V+ +AS+ GL+ LC  HP+VQV+L +ID EL E G  + PG+GDAGDR +  G H
Sbjct:   15 PPNTEVVLAKHPVLHHKLTKLRDERTDSNLFRHVLREVTFYLGYEATYDLETTPKAIKTPISAHEGA-ELTTKVAVVPILRAGLGMVEPMLDLLPNATVHHIGMYRNKHSLLPVQYYNKLPKECNVDVAIVLEPVIATAGTIIATVAILKTWGVPKIKIVSTIASKQGLQDLCAKHPDVQVFLGAIDDELTEEGY-IYPGLGDAGDREFQTGTH 226
[Close]
BLAST of mRNA_H-elongata_contig11517.1207.1 vs. uniprot
Match: A0A7R9WS49_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WS49_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.010e-61
Identity = 107/232 (46.12%), Postives = 157/232 (67.67%), Query Frame = 3 
Query:   66 TAAEDCSKDTTAP-------PQAEVSEHPVLQHKLALIRHQEGTAKEFRALFREITFYLGYEATRDLTTRKISVKTDVVEK-------CPARKIAEKVAVVPILRGGLGMTEALLELLPESPVYHVGMYRNPGSNIPVQYYNRLPKGNPSDVALILDPIIASSRTITAVVSMVKKWGAKKIKVVTLVASRSGLEVLCKMHPEVQVYLASIDELAENGLDLVPGIGDAGDRLY 719
            TA  + S D TA        P   +S+HPVL HK++++R     + +FR++ REIT++LGYEAT  LTTR I V     ++       C   K+ E+VAVVPILR GLGM++++LELLP++ VYH+GMYR PGS  PVQY+NRLP+   SD A++LDP+IAS++T  A ++M+KKWG  KI +V+++ S  GL  + + HP+VQ+ + ++D +      ++PG+GDAGDRL+
Sbjct:   26 TAVSEDSTDATAATEKHTFGPSVHISKHPVLLHKISILRSANTPSGQFRSVLREITYHLGYEATAGLTTRPIPVSVSAGKESPNDHLDCTGDKLIERVAVVPILRSGLGMSDSMLELLPKASVYHIGMYRIPGS-APVQYFNRLPRKCASDAAIVLDPVIASAQTSLAAIAMLKKWGVPKIHLVSVLGSSEGLATIEEQHPDVQITVGTVDSILTKDGIVLPGLGDAGDRLF 256
[Close]
BLAST of mRNA_H-elongata_contig11517.1207.1 vs. uniprot
Match: A0A8K1CH49_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CH49_PYTOL)

HSP 1 Score: 206 bits (523), Expect = 1.110e-61
Identity = 113/216 (52.31%), Postives = 150/216 (69.44%), Query Frame = 3 
Query:  102 PPQAEV--SEHPVLQHKLALIRHQEGTAKEFRALFREITFYLGYEATRDLTTRKISVKTDVVEKCPARKIAEKVAVVPILRGGLGMTEALLELLPESPVYHVGMYRNPGSNIPVQYYNRLPKGNPSDVALILDPIIASSRTITAVVSMVKKWGAKKIKVVTLVASRSGLEVLCKMHPEVQVYLASIDE-LAENGLDLVPGIGDAGDRLYLGAHVKD 740
            P +A+V  + HPVL HKL  +R +   +  FR L RE+TFYLGYEAT DL T   ++KT V E   A ++   VAVVPILR GLGM E +L+LLP + V+H+GMYRN  S +PVQYYN+LPK    DVA++L+P+IA++ TI A V+++K WG  KIKV++ VAS+ GL+ L   HPEV+V +A+IDE L E G  + PG+GDAGDR +   H  D
Sbjct:   15 PAEAKVWCTSHPVLLHKLTKLRDERTDSTVFRHLLREVTFYLGYEATYDLQTTPKAIKTPVGEHSGA-ELTTSVAVVPILRAGLGMVEPMLDLLPNAAVHHIGMYRNKHSLLPVQYYNKLPKQCDLDVAIVLEPVIATAGTIVATVAILKTWGVTKIKVISAVASKPGLQDLLSKHPEVEVIVAAIDEALTEEGY-IFPGLGDAGDRQFQTGHHAD 228
[Close]
BLAST of mRNA_H-elongata_contig11517.1207.1 vs. uniprot
Match: A0A3R7K1K3_9STRA (Uracil phosphoribosyltransferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K1K3_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.140e-61
Identity = 104/199 (52.26%), Postives = 150/199 (75.38%), Query Frame = 3 
Query:  126 HPVLQHKLALIRHQEGTAKEFRALFREITFYLGYEATRDLTTRKISVKTDVVEKCPARKIAEKVAVVPILRGGLGMTEALLELLPESPVYHVGMYRNPGSNIPVQYYNRLPKGNPSDVALILDPIIASSRTITAVVSMVKKWGAKKIKVVTLVASRSGLEVLCKMHPEVQVYLASID-ELAENGLDLVPGIGDAGDRLY 719
            HPVL+HKL  +R +   ++ FR L RE+TFYLGY+AT DL+T    +KT V +   A +++  VA+VPILR GLGM E +L+LLP++ V+H+GMYRN  S +PVQYYN+LPK    +VA+IL+P+IA++ TI A ++++K WG +KIK+VT +AS+ GL+ +C  HP+V++YLA+ID EL E G  ++PG+GDAGDR +
Sbjct:   25 HPVLRHKLTKLRDERTDSRVFRNLLREVTFYLGYDATDDLSTVPKKIKTPVGDHQGA-ELSTSVALVPILRAGLGMVEPMLDLLPKATVHHIGMYRNKQSLLPVQYYNKLPKECNVEVAIILEPVIATAGTILATLAVLKTWGVEKIKIVTAIASKPGLKEVCASHPDVEIYLAAIDDELTEEGY-ILPGLGDAGDREF 221
[Close]
BLAST of mRNA_H-elongata_contig11517.1207.1 vs. uniprot
Match: A0A7S2MFT6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MFT6_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.420e-61
Identity = 99/208 (47.60%), Postives = 150/208 (72.12%), Query Frame = 3 
Query:  105 PQAEVSEHPVLQHKLALIRHQEGTAKEFRALFREITFYLGYEATRDLTTRKISVKTDVVE---KCPARKIAEKVAVVPILRGGLGMTEALLELLPESPVYHVGMYRNPGSNIPVQYYNRLPKGNPSDVALILDPIIASSRTITAVVSMVKKWGAKKIKVVTLVASRSGLEVLCKMHPEVQVYLASIDELAENGLDLVPGIGDAGDRLY 719
            P   VS HPVL  K++++R    T   FR++ R+ITF+LGYEAT  LTTR I++   V     +C  +K+ E+VA++PILR GLGMT+ +LEL+P++ V+H+GMYR   + +PVQYYNRLP+   SD+A ++DP+IA+++T+ +VV+M+KKWG  KI V++++AS+ GLE   K HP+V V +  +D+   +   ++PG+GDAGDRL+
Sbjct:   17 PNVHVSTHPVLHDKISILRSSSTTPASFRSVLRDITFHLGYEATATLTTRPIALTVPVGHDHIECKGKKLNERVALIPILRSGLGMTDPMLELIPKAEVHHIGMYRQ--NLMPVQYYNRLPRKCESDIAFVVDPLIATAQTLVSVVAMLKKWGVPKIHVISVIASKPGLEEFLKSHPDVLVTVGHVDDELRDDGTIIPGLGDAGDRLF 222
[Close]
BLAST of mRNA_H-elongata_contig11517.1207.1 vs. uniprot
Match: A0A7S1CEL3_9STRA (Uracil phosphoribosyltransferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CEL3_9STRA)

HSP 1 Score: 207 bits (526), Expect = 3.570e-61
Identity = 108/221 (48.87%), Postives = 153/221 (69.23%), Query Frame = 3 
Query:  108 QAEVSEHPVLQHKLALIRHQEGTAKEFRALFREITFYLGYEATRDLTTRKISVKTDVVEKCPARKIAEKVAVVPILRGGLGMTEALLELLPESPVYHVGMYRNPGSNIPVQYYNRLPKGNPSDVALILDPIIASSRTITAVVSMVKKWGAKKIKVVTLVASRSGLEVLCKMHPEVQVYLASID-ELAENGLDLVPGIGDAGDRLYLGAHVK-DIDIDIAPS 764
            Q  VS HPVL+HKL L+R ++  A +FR L RE+TFYLGYEATRD+      V T V      + +AE++A+VP+LR GLGMTEA+ +LLP +  +H+G+YR+  S +P+ YYNRLP     D A+IL+P+IA++ TI A V ++  WG KKIK+++++A+R GLE L   HPEV+V++  +D EL E G  ++PG+GD GDRL+   H K D+ +D A S
Sbjct:   62 QVHVSTHPVLKHKLTLLRAKDTHATQFRQLLREVTFYLGYEATRDVAVEDCDVVTPVATG-KGKTLAERIALVPVLRAGLGMTEAMQDLLPTAHTHHIGIYRDAHSLVPILYYNRLPAEVDCDTAIILEPMIATAGTIHATVRILNDWGCKKIKIISIIAAREGLEKLTAAHPEVEVFVGEVDDELTEEGY-VIPGLGDVGDRLFGTPHDKPDLALDPAAS 280
[Close]
BLAST of mRNA_H-elongata_contig11517.1207.1 vs. uniprot
Match: A0A7S4JLL4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JLL4_9STRA)

HSP 1 Score: 202 bits (515), Expect = 4.170e-60
Identity = 98/208 (47.12%), Postives = 146/208 (70.19%), Query Frame = 3 
Query:  105 PQAEVSEHPVLQHKLALIRHQEGTAKEFRALFREITFYLGYEATRDLTTRKISVKTDVVE---KCPARKIAEKVAVVPILRGGLGMTEALLELLPESPVYHVGMYRNPGSNIPVQYYNRLPKGNPSDVALILDPIIASSRTITAVVSMVKKWGAKKIKVVTLVASRSGLEVLCKMHPEVQVYLASIDELAENGLDLVPGIGDAGDRLY 719
            P   +S HPVL HK++++R    +   FR++ REITF+LGYEAT  L+T+ + +   V     +C  +KIA++VA++PILR GLGM +++LELLP++ V+H+GMYR     +PVQYYNRLP+    DVA +LDP++AS  T+ +V S +KKWG  KI V++++ASRSGL  L K HP++ V + ++D+   +    +PG+GDAGDRL+
Sbjct:   34 PNVHLSRHPVLSHKISILRSSSTSPASFRSVLREITFHLGYEATSSLSTKPVPLSVPVGHDHIECTGQKIADRVALIPILRSGLGMVDSMLELLPDAGVHHIGMYRR--DMMPVQYYNRLPRKCECDVAYVLDPVVASGSTVMSVCSQLKKWGVPKIYVLSVIASRSGLAKLIKTHPDIVVSVGTVDDKLNDDGMCIPGLGDAGDRLF 239
[Close]
BLAST of mRNA_H-elongata_contig11517.1207.1 vs. uniprot
Match: B8CAC1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAC1_THAPS)

HSP 1 Score: 202 bits (515), Expect = 5.810e-60
Identity = 112/232 (48.28%), Postives = 156/232 (67.24%), Query Frame = 3 
Query:   96 TAP--PQAEVSEHPVLQHKLALIRHQEGTAKEFRALFREITFYLGYEATRDLTTRKISV-------KTDVVEKCPARKIAEKVAVVPILRGGLGMTEALLELLPESPVYHVGMYRNPGSNIPVQYYNRLPKGNPSDVALILDPIIASSRTITAVVSMVKKWGAKKIKVVTLVASRSGLEVLCKMHPEVQVYLASIDELAENGLDLVPGIGDAGDRLYLGAHVKDIDIDIAPS 764
            TAP  P   VS+HPVL HKL+++R    +   FR+  REITF+LGYEAT  LTTR + +       KT +  +    K+A+KVA++PILR GLGM +++LEL+  + V+H+GMYR+  S +PVQYYNRLPK    DVA +LDP+IA+S TI +V  ++KKWG  +I VV+++AS+ GL  L K HP+V V L  IDE      D++PG+GDAGDRL+    ++D +  + PS
Sbjct:   35 TAPYGPNLHVSKHPVLAHKLSILRSSSTSPSSFRSTLREITFHLGYEATSTLTTRDVPLTVPGTDHKTHI--EATGTKLAQKVALIPILRSGLGMVDSMLELISSAEVHHIGMYRSK-SLMPVQYYNRLPKKCDVDVAYVLDPLIATSATIISVAGILKKWGVSEIHVVSVIASKQGLSELMKFHPDVHVTLGHIDEELNADGDVMPGLGDAGDRLFGTPLIEDEEELVHPS 263
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11517.1207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRY1_ECTSI1.000e-11882.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YL27_9STRA1.450e-9763.95Uracil phosphoribosyltransferase-domain-containing... [more]
A0A5D6XMY6_9STRA1.430e-6252.34Uracil phosphoribosyltransferase n=1 Tax=Pythium b... [more]
A0A7R9WS49_9STRA1.010e-6146.12Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A8K1CH49_PYTOL1.110e-6152.31Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7K1K3_9STRA1.140e-6152.26Uracil phosphoribosyltransferase n=3 Tax=Phytophth... [more]
A0A7S2MFT6_9STRA1.420e-6147.60Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1CEL3_9STRA3.570e-6148.87Uracil phosphoribosyltransferase n=1 Tax=Bicosoeci... [more]
A0A7S4JLL4_9STRA4.170e-6047.12Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
B8CAC1_THAPS5.810e-6048.28Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11517contigH-elongata_contig11517:1093..7412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score352.4
Seed ortholog evalue1.7e-94
Seed eggNOG ortholog2880.D7FRY1
KEGG rclassRC00063
KEGG koko:K00761
KEGG ReactionR00966
KEGG Pathwayko00240,ko01100,map00240,map01100
EggNOG free text desc.UMP salvage
EggNOG OGsCOG0572@1,KOG4203@2759
EC2.4.2.9
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUracil phosphoribosyltransferase
Ec32 orthologEc-03_003570.1
Exons7
Model size1016
Cds size771
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929667.270209-UTR-H-elongata_contig11517:1092..12991622929667.270209-UTR-H-elongata_contig11517:1092..1299Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11517 1093..1299 -
1691679112.1130016-UTR-H-elongata_contig11517:1092..12991691679112.1130016-UTR-H-elongata_contig11517:1092..1299Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11517 1093..1299 -
1622929667.4110384-UTR-H-elongata_contig11517:7374..74121622929667.4110384-UTR-H-elongata_contig11517:7374..7412Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11517 7375..7412 -
1691679112.1959033-UTR-H-elongata_contig11517:7374..74121691679112.1959033-UTR-H-elongata_contig11517:7374..7412Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11517 7375..7412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929667.2875063-CDS-H-elongata_contig11517:1299..14401622929667.2875063-CDS-H-elongata_contig11517:1299..1440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11517 1300..1440 -
1691679112.1257956-CDS-H-elongata_contig11517:1299..14401691679112.1257956-CDS-H-elongata_contig11517:1299..1440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11517 1300..1440 -
1622929667.3061266-CDS-H-elongata_contig11517:2402..25011622929667.3061266-CDS-H-elongata_contig11517:2402..2501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11517 2403..2501 -
1691679112.1344798-CDS-H-elongata_contig11517:2402..25011691679112.1344798-CDS-H-elongata_contig11517:2402..2501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11517 2403..2501 -
1622929667.3243904-CDS-H-elongata_contig11517:4341..44001622929667.3243904-CDS-H-elongata_contig11517:4341..4400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11517 4342..4400 -
1691679112.142464-CDS-H-elongata_contig11517:4341..44001691679112.142464-CDS-H-elongata_contig11517:4341..4400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11517 4342..4400 -
1622929667.338322-CDS-H-elongata_contig11517:5101..52741622929667.338322-CDS-H-elongata_contig11517:5101..5274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11517 5102..5274 -
1691679112.1515784-CDS-H-elongata_contig11517:5101..52741691679112.1515784-CDS-H-elongata_contig11517:5101..5274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11517 5102..5274 -
1622929667.35315-CDS-H-elongata_contig11517:5738..58521622929667.35315-CDS-H-elongata_contig11517:5738..5852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11517 5739..5852 -
1691679112.1613195-CDS-H-elongata_contig11517:5738..58521691679112.1613195-CDS-H-elongata_contig11517:5738..5852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11517 5739..5852 -
1622929667.3715405-CDS-H-elongata_contig11517:6498..65901622929667.3715405-CDS-H-elongata_contig11517:6498..6590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11517 6499..6590 -
1691679112.1776373-CDS-H-elongata_contig11517:6498..65901691679112.1776373-CDS-H-elongata_contig11517:6498..6590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11517 6499..6590 -
1622929667.3881352-CDS-H-elongata_contig11517:7281..73741622929667.3881352-CDS-H-elongata_contig11517:7281..7374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11517 7282..7374 -
1691679112.1877406-CDS-H-elongata_contig11517:7281..73741691679112.1877406-CDS-H-elongata_contig11517:7281..7374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11517 7282..7374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11517.1207.1prot_H-elongata_contig11517.1207.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11517 1300..7374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11517.1207.1

>prot_H-elongata_contig11517.1207.1 ID=prot_H-elongata_contig11517.1207.1|Name=mRNA_H-elongata_contig11517.1207.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=257bp
MSIASKGAPTAAEDCSKDTTAPPQAEVSEHPVLQHKLALIRHQEGTAKEF
RALFREITFYLGYEATRDLTTRKISVKTDVVEKCPARKIAEKVAVVPILR
GGLGMTEALLELLPESPVYHVGMYRNPGSNIPVQYYNRLPKGNPSDVALI
LDPIIASSRTITAVVSMVKKWGAKKIKVVTLVASRSGLEVLCKMHPEVQV
YLASIDELAENGLDLVPGIGDAGDRLYLGAHVKDIDIDIAPSSDDCIDCD
QPNAPI*
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mRNA from alignment at H-elongata_contig11517:1093..7412-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11517.1207.1 ID=mRNA_H-elongata_contig11517.1207.1|Name=mRNA_H-elongata_contig11517.1207.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6320bp|location=Sequence derived from alignment at H-elongata_contig11517:1093..7412- (Himanthalia elongata Himel1 dioecious)
GATATTTTCATACTGCAAACGTGGGTGTAAGATTGATTATGAGTATCGCT
AGCAAAGGAGCTCCCACCGCTGCCGAAGACTGTTCCAAAGATACGACTGC
GCCGCCTCAAGCGGAAGTATCCGAACATCCGGTGCGTCGCTCAAATGTGT
TGTCCTGCTTTATATAGATATGTGTGTGTATGTGTAATCATACATTCCCC
TCGCCCACATTTTTAATGCTGCCGAGTGTTTGACTCTAAATCTATACTGT
ACAATTACTCGTAGAAAACAAAGTCCATACCGTATATGTCGTCCACGGAA
TCCTGCCTCTTTGACAGACGAAGTTTCTGCTTCAATGTGTCTCGACCATC
GGACCCAACGTTCGCTCTCGACAAAGCACTCGAATAATCCACCGCAGATG
GCTCATTATTATACGTTGAACGGGCCCGCATAGGTTGATTCATAGACATA
ATCCACTTAAGTCCCACACCCATTTGCTCACTACTGGTATATATTCTGAT
TGTTGTTGTTGTTGCTGACTGTCGAGACAAAATACTGTACTTTTACGTTA
GTCGTAAATGTGATCAAAGGTAGTAAGTAATGTACACATTCAAACCTAAC
GATAGTTGGTCCCCTGGACTGAACCTCTCACTGCGCTTCTCATGGTGCTA
AGAAGGTGTGGAGTGTGGATGTTCGGAGAGTTGGAATAAGTTCAAGGTGT
TTTTAATATAAATATACTTCGTGCCAATTAAACCACTTTGAATGTATAGA
ATGTAGAGTACAGTATCCAAATACGCGAGGATTTGATTTGGAAGCGCCCC
CTCTGTCCCATCGTATTCATAGGTGCTACAACATAAACTTGCCCTCATTC
GGCACCAAGAGGGAACAGCCAAGGAGTTCAGGGCACTGTTCCGCGAAATC
ACCTTCTATCTAGGGTAAGATGTTCCGCGAAATTGGCAAATTGGGTCATC
CAGCATCCGCATACTTTGGAGCGCTCGATGCCTACTTTCTGCCCATAAAG
TCATTCGATGGGCATTTTTATTGTTTCAAACCGATGGTACATACTGTATA
GCAAGGGCCTGAATAAGTGAGTGAACTTGGATAAAATATAAAAGTGACCT
CTTATTTTGTCTCCAGGGAGCGCAAATTCGTAATGCGTATGGAGGCTGTT
CTGCCTATCCTAAAGCACGTGTCAGTTTTCGCGAAGAGCGGCGTAACTAT
CGAGAACATCGCCAGGAAGGAGGACAAAAGGACGGGGAGGGCTGAGGGGT
GTCCGACATAGAACTTCGGCTTGACATTATTAACATTAACATTAGCCCTT
CCTACACCCCTCTCCTTGTTTTTAAGTATTATTATATATTATTAGTAGTA
ATATAGTGATATATGAAATACAATACCTGCTAATAGTTACCCTGGTATCT
GGGAAGAAGGTAGCCGTTTTAGCTACCTGTACTTTGCAACAAATACTGGT
ACAAAGTAAAAAGTACCGGGAGGAAGGAAGGGTAGTTGACTATTTCGAGT
CGCTCAAACCCCCTCTTCTTTTATGATGCCCCTCTTTTACATGGTGTTCG
GTATTGACAGGTATGAGGCAACCAGGGACCTGACGACAAGAAAGATTAGC
GTCAAAACGGATGTAGTGGAGAAATGCCCGGCCAGGAAGATTGCGGAGAA
GGTCGCCGTTGTGCCCATCCTCAGGCAAGCCTAGCAGTCGTTCTGCACAT
CGCTTGTGAGTTGACGGACAAACATCGGAAGGAAACCTGCACAGCCTAGT
GGGTTAGCGTTCAAAGAACCCTTGCCTCGTACTTTAATAGCAATATCAAT
AGTAATAGTAGTAGTAGTAATAGCAATAGTAATAGTAGCAATATTATTAG
TAATAGTAACCCTCAATGCGAAGACCTTGAATAATTTGAAGTAACTAACG
TCTCAAAATAGAAAATAGAAAATAGAAAATACCCCCTTAGATGACGCGAT
GACGGGATCCAGACTAACGTATCGACCAATGTCTGCCAGCCCCAACAACA
TTTAGATCTCTCCGTCTCTGTGCGTAACACAGCTGTCACGGTTCATGGCA
ACCCCTTCACATGTCTTGTGATGCCGTTGTCGTACTTAACGAAATCTTCT
ACCCTGTCCACTCTGCGCAATCTCTACCATGGCGACAGGGGTGGACTGGG
GATGACAGAGGCGCTTCTCGAGTTGCTACCGGAGTCACCCGTCTACCACG
TCGGCATGTACCGCAACCCGGGCAGCAACATACCAGTACAATACTACAAC
AGGCTGCCCAAGGGAAACCCTTCAGACGTTGCACTTATACTGGACCCCAT
CATCGCGTCATGTGAGGTCTTCTTTTCCTCACCCTCTGTCAACGAGCCCT
CCAACGGCAGAAGTTACTGATACAATCTACCAGTATTATACTGCCATGTT
TCCCGCTTATCTGAGGTCCTACTGTGATGTACCGTACGGGATAAATCAAA
CCCTCTCCCGGGTACATGTATACAGTACATGCCATGCCATCCCATGCCTA
CCATATTTTTATCGCTATCGATGCAAGTTATTAACAGCACTCACTCCTAC
ACCTCAACTATACAATGGTTGTAGTCTGCTTAGTCCCGTTCACACGATTT
ATACTGTTAATGGTGTAGACTATGACCGCCACAGAAACAAAAAGAACAAG
GAGCCATCCTTCTGCGCCATTGGCATAGTCTACCAGATTACAACTAGACT
AGACAACCCGAGGCGGCCTGTACTACAAGTGTAGTGCTTATTATTATACG
CCAAATAGACACCTCATCGCCAGGAGGCTTCTCCGCTAAAACGCTTGCTT
TCCAGTCTCTGTTAAAACGTTTTAGCGCTTTGTATATCTTGTATATAAAG
TAAATTATTTGACAAAAATCATGAGCTTCATACGATTTAGTGGTGGTAGT
TATTTTACTTAGCTGTAGTATGATACCAGTTTATATTTATTACGAGTATT
TGTTATCACTCCTTGACAGCACCTTTGTTGTCTCCTGCTATCCCATTTTC
CGCCCTTCACAGCGCGCACGATCACAGCCGTCGTCTCCATGGTAAAAAAG
TGGGGGGCAAAGAAGATCAAGGTGCGACCATTTGCTCAAACGACCAATTA
TGCACCAGATTTAGCATGGGTGGGGAGAATGATCAGGCTGACGCGGGATA
AGGCGACCAAGCCCGTCTCGCAAAACCAAATTATCGGGCGAAAACGGAAA
CAGGAAACAGCGTTTCCCTTTTATCAATTTGCATTATACGGCGCACACCG
GCATGACACTTAAGGGGGTGTCACGCCAGTTTGCAAATTTCTCCCCCCTT
ATGGGGAGCTAACTATCCCCGAAGACGTTGGATCGGCCTATCCTACTCGC
TTTGCTTACGCAACCGCGCTGGACTATCCCTACAACTCTTCTTCCTGCCC
CCGCTGCTCCACCTCTGGACGCATCACCCCAGAGCGTTGGCGTTTCGAAT
GCCGCTACGGCCACACCCTCCTCTTTCCCCAGCTTTGTTGAGGCCTCCGT
CCCGTTCCCGATTTGGCGGATTCTCGTTGCTTGCGGGACGACCATCATCA
CTACTGCTGTTACCAGCGCTGCCGAATTCACCACTGTGGCGGTGGGTACT
CGCGCCCCCTCCCTCAACGCTACGGCGTTGGTGACCGGCGTATCCTCACC
CTCAATTCCTACAACCTGCATTGTCGTGACAGCGGCCACCAGCTCCGGCA
TCGTGGTCACTGCAATCGCGCCCGCGCCAGCCCCTGCATGCCCCATCGTC
ACTTCCACTGGTCGTGCGGCTTTCAGTGGTCGCGTGACTACTGGTGGTAC
AATTGGTTCCTCGCCTTCGGTCGGTCAGTACCGGTGGCGCGAGGCTCCCT
TCAACTCCCTCCTTTGCCACCCCCGTCGCCGCGGCAGCTGCCACGAGGAC
GTTATCTTCGACTCCCTCCTCCTCCTCCGCCACCGCCGCAGCCGCTGCGG
ATGCCTCCGCCACTACCGTGGCGATGTCGCGAAACTTTATACATTTGCTC
ACCGTTGGAGCTAGGCTGTCCGCTGGAACCGTGGCTGGTCGGTCGACGGC
TCGGGCCATATCCTCGCGGGTCCTGGCGGAAAGCGCCCGGTTCAGGACGA
AGGACGAGTGTCGCCGAAGTTTTGCCGTCTTTTGTCCCCGTGTCGATTTA
GATACCCTCGCTTGAGCACCCGGACTCGGTGGTTCGCGACGGTCTGATAG
AATTTGACCGTATCATCGCCGAAATCGCGGCAGGTGGAGAACGCAAGAGT
CTGAAGGGTGTAGATCAAACAATCACCCTGTTCAGCTGACCACGAGCAAT
ATTGGAAACCATATGCGATTGTTCCACACTACAATAGGATAGGATATATG
TGATGGCCAAACAAACATTATGGCGAAAAGTTATTGTAGTTGAATGCGCG
CGCATTTCCAGCCGAAAATATTTTCACAAAGGGTTACCCGCTGGTGGCGA
TGTTACACAGAATGCAGTACTATAACACAGAATGAGGAGATTACTGGTAC
AGATTGCGCGATTATGCGCAATTTAATAAACACACACACACACACTGCTT
GCACACTGTTGTAATTTTATATGGGGAAAGCACCAAACACAAATGGTTCC
ATACAGGAGGGTGTACACTCTCGAAGTGACCGGAGATACTAACATTTATT
GTACTATACCATAAACACGATTTTTTTTTTGAAAAACTGAACTGAAGGGT
TGCGTTTTCTCTCCCTAGCCCCTTTGTGGGTTTAGTCGCTGTAATAGGTT
CTATGTTCGATGGTACATATTAGCACAGTAATTAGTAAATAGTACTGTAA
ATAATACCGTTACGAAGTAGTAAAGTACCAGTATATTATACTGAATATAC
TGAATATACTCTGTTGTAATTTAAATAACCCAACCCAATCGCTTCTCACT
CGTCATAAAAGGTGGTGACCTTGGTAGCGTCGCGGAGTGGACTGGAAGTG
CTGTGCAAAATGCACCCCGAGGTGCAGGTGTACCTGGCCTCCATCGACGA
GCTCGCAGAGGTACAGTACCTACAATACAATGCAATGAAATGCAATGCAA
TATTAGACGAAGTTGATCTGAAGTCGTGTACAGTGTTATCACGAGGCGCG
CATAGCGCTGTCATAATGATATGTCTTGTGCTCTGATACTATCATCAAAT
AGCATTATAGGTTGCATTTTGACACTAGTAGACAGTGGACAGTAGCACTC
CTAAACAAAAGGAAGGGGCAGTGGACAGTGGCGATTAGATTTTATAATGG
TATTTAATTATGGGCGGGTTAAATAGAACTTGGAAAGTTTTTAAAAGGCG
TACGTTTTATGAAAACTCGAAGGTTTTACCAAGACATCATTTCCAACTTT
GAAAATGTGACTGTTACGTCTCGTGTAAACAAAGCTCCTTGATCTACCTT
CGTTGGCGAAGTATGTTGTAAGGACATGACACACTCAAACAACAACGCAA
CTACTATAAGCCATCTCGATGCCGCAAAGCCGTGTCTGCTCGGACGGAAT
TAGCTTGCAATGACAGCTGAAGCGCTTGCGAGGCTCTTTGGACTTTTTTT
GCGGAGCGTGGGTGTATTGATTGGCGGCAGGTTTCGATGTCTCAAACATG
CCATAACAGTGTGTGTAGCCCACCTTTTCGGCAATTACTTTCAATTGCCA
GTTGTCAGTGACGTTTAGTAATAGCAGTAATAGCCCGTCGGACTCAGCGC
ATTTTACCAATATCATACCTTACAGGTTAGATGTGTAGGTGTTTCGTTAC
TTGAACCTCTTGGAGATGAATGTACCTTAATGTAATACTGTACCTTCTCT
TCTGTACGGTAGGTGTTCCATTTCCAAGATAATATTAGTAGTGACTATTA
GCGCTAATATTAATTATAAGGTACTTCCAAGAAATCGACTGCTAGAGCCG
CGGTTCACCCTTAATACTGAAGTAAAACAAACTGCACCTTCCCACCGCAT
GATGTGTTTCCCGGCTAGGCAGAATGGCCTCGACCTCGTACCTGGCATAG
GCGATGCTGGAGACCGTTTATACCTCGGTGCACACGTGAAGGACATCGAC
ATCGATATTGCACCTTCTTCAGATGATTGTATCGATTGCGATCAGCCCAA
CGCCCCTATTTAGCGCATTTTCATAGATAATTTAGATATGGTTGAGGCCG
CCTTGGCACCAGGACGTGTGCTTTTTCCCTGCCCAGGTGAAAAGTCATAT
AACACCTGTCTACATTGTGTTATATATTATACATACATACATACATTATC
ATTATCATATCCCTGGATACCCCTGGCAATGACCCAGTGTTTCCCAGTAT
TGGTATGTACGGGATAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig11517:1093..7412-

>mRNA_H-elongata_contig11517.1207.1 ID=mRNA_H-elongata_contig11517.1207.1|Name=mRNA_H-elongata_contig11517.1207.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1542bp|location=Sequence derived from alignment at H-elongata_contig11517:1093..7412- (Himanthalia elongata Himel1 dioecious)
ATGAGTATCGCTAGCAAAGGAGCTCCCACCGCTGCCGAAGACTGTTCCAA
AGATACGACTGCGCCGCCTCAAGCGGAAGTATCCGAACATCCGATGAGTA
TCGCTAGCAAAGGAGCTCCCACCGCTGCCGAAGACTGTTCCAAAGATACG
ACTGCGCCGCCTCAAGCGGAAGTATCCGAACATCCGGTGCTACAACATAA
ACTTGCCCTCATTCGGCACCAAGAGGGAACAGCCAAGGAGTTCAGGGCAC
TGTTCCGCGAAATCACCTTCTATCTAGGGTGCTACAACATAAACTTGCCC
TCATTCGGCACCAAGAGGGAACAGCCAAGGAGTTCAGGGCACTGTTCCGC
GAAATCACCTTCTATCTAGGGTATGAGGCAACCAGGGACCTGACGACAAG
AAAGATTAGCGTCAAAACGGATGTAGTGGAGAAATGCCCGGCCAGGAAGA
TTGCGGAGAAGGTCGCCGTTGTGCCCATCCTCAGGTATGAGGCAACCAGG
GACCTGACGACAAGAAAGATTAGCGTCAAAACGGATGTAGTGGAGAAATG
CCCGGCCAGGAAGATTGCGGAGAAGGTCGCCGTTGTGCCCATCCTCAGGG
GTGGACTGGGGATGACAGAGGCGCTTCTCGAGTTGCTACCGGAGTCACCC
GTCTACCACGTCGGCATGTACCGCAACCCGGGCAGCAACATACCAGTACA
ATACTACAACAGGCTGCCCAAGGGAAACCCTTCAGACGTTGCACTTATAC
TGGACCCCATCATCGCGTCATGGGTGGACTGGGGATGACAGAGGCGCTTC
TCGAGTTGCTACCGGAGTCACCCGTCTACCACGTCGGCATGTACCGCAAC
CCGGGCAGCAACATACCAGTACAATACTACAACAGGCTGCCCAAGGGAAA
CCCTTCAGACGTTGCACTTATACTGGACCCCATCATCGCGTCATCGCGCA
CGATCACAGCCGTCGTCTCCATGGTAAAAAAGTGGGGGGCAAAGAAGATC
AAGCGCGCACGATCACAGCCGTCGTCTCCATGGTAAAAAAGTGGGGGGCA
AAGAAGATCAAGGTGGTGACCTTGGTAGCGTCGCGGAGTGGACTGGAAGT
GCTGTGCAAAATGCACCCCGAGGTGCAGGTGTACCTGGCCTCCATCGACG
AGCTCGCAGAGGTGGTGACCTTGGTAGCGTCGCGGAGTGGACTGGAAGTG
CTGTGCAAAATGCACCCCGAGGTGCAGGTGTACCTGGCCTCCATCGACGA
GCTCGCAGAGAATGGCCTCGACCTCGTACCTGGCATAGGCGATGCTGGAG
ACCGTTTATACCTCGGTGCACACGTGAAGGACATCGACATCGATATTGCA
CCTTCTTCAGATGATTGTATCGATTGCGATCAGCCCAACGCCCCTATTTA
GAATGGCCTCGACCTCGTACCTGGCATAGGCGATGCTGGAGACCGTTTAT
ACCTCGGTGCACACGTGAAGGACATCGACATCGATATTGCACCTTCTTCA
GATGATTGTATCGATTGCGATCAGCCCAACGCCCCTATTTAG
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