mRNA_H-elongata_contig48907.12061.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A6H5L7D8_9PHAE (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7D8_9PHAE) HSP 1 Score: 186 bits (472), Expect = 4.350e-56 Identity = 107/162 (66.05%), Postives = 116/162 (71.60%), Query Frame = 1
Query: 1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGL-----------GEVETGRMFSPAVDTIEAGAVASTRSDGSRALAGQSRLSLTVRLMKSKPFLVFLALILASIFLNQP 453
VGSRICLSASEYHQETWQPSWTV+SLV+ALVAHMTE AVEIG+V+GATPSQKRKAAV+SRSF C ACGC H FPED FP PKG G R AV EA A A TR L G+SRLS TVRLM SKPFL+ L LI+AS+FLNQP
Sbjct: 129 VGSRICLSASEYHQETWQPSWTVASLVSALVAHMTEAAVEIGAVRGATPSQKRKAAVKSRSFVCAACGCCHDAFPEDRFPIPKGFDKGKKAGAGADGSAGARREARVAVGVGEAPAAA-TRGG----LTGRSRLSWTVRLMTSKPFLLALTLIIASVFLNQP 285
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A4D9CVX3_9STRA (UBC core domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVX3_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.200e-17 Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1
Query: 1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGLGEV 264
VG+ ICLSA+ +HQETWQP WTV +LV+AL +HM PAVE+G ++ + +++ A RSR F C CG H FP F +GEV
Sbjct: 81 VGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGME-CSARRRKFLARRSRGFLCRGCGVDHSNFPGRIFRSLPEVGEV 167
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: W7TJJ9_9STRA (Ubiquitin-conjugating enzyme e2 j1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJJ9_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 3.280e-17 Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1
Query: 1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGLGEV 264
VG+ ICLSA+ +HQETWQP WTV +LV+AL +HM PAVE+G ++ + +++ A RSR F C CG H FP F +GEV
Sbjct: 145 VGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGME-CSARRRKFLARRSRGFLCRGCGVDHSNFPGRVFRSLPEVGEV 231
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A2V3INT9_9FLOR (Ubiquitin-conjugating enzyme E2 J1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INT9_9FLOR) HSP 1 Score: 76.3 bits (186), Expect = 1.470e-13 Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 1
Query: 1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGLGEVETGRMFSPAV 294
VG RICLS + +HQETWQPSW + +++TAL+ M PA +G++ +R+ A RS F C CG R P DH P G++ S A+
Sbjct: 84 VGKRICLSVTAHHQETWQPSWGIRTILTALIGFMPSPAEGVGALDY-PDDDRRRLARRSHLFHCGRCGSR----PVDHLPPMTQTCSPANGKIQSKAL 176
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A5J4Z378_PORPP (Ubiquitin-conjugating enzyme E2 J1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z378_PORPP) HSP 1 Score: 73.6 bits (179), Expect = 1.090e-12 Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKA-AVRSRSFECTACGCRHRFFPED 231
VG+RICLS + +HQETWQPSW + +++TAL+ M A +GS+ P++ R+A A +S +F+C CGC+ + ED
Sbjct: 88 VGTRICLSITSHHQETWQPSWGIRTILTALIGFMPSKAEGLGSLN--FPAEDRRALAAKSIAFQCPICGCKVKELFED 163
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A3F2RXI9_9STRA (UBC core domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXI9_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 9.730e-11 Identity = 39/100 (39.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query: 1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGLGEVETGRMFSPAVDT 300
R+CLS S++H ETW P W+VSS++T L + M E +GS+ T +QKRK A S CT R + FP+ + + E E R SPA +T
Sbjct: 82 TNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLETQATLGSIS-TTDAQKRKYAAASLEANCTNATFR-KLFPDLVTLQEQRDKEQELLRKLSPAGET 179
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A7E4VBD2_PANRE (UBC core domain-containing protein n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4VBD2_PANRE) HSP 1 Score: 68.2 bits (165), Expect = 1.070e-10 Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 1
Query: 1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAV-EIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHF--------PKPKGLGEVE----------TGRMFSPAVDTIE 306
++ICLS S+YH ETWQPSW++ + + AL+A M+ P++ +GS++ + Q++ A +S + C AC C+ +DH PKP+ E T + SPA +++E
Sbjct: 83 TNTKICLSISDYHPETWQPSWSIGTALVALIAFMSTPSLGAVGSIE-TSDEQRKILAKKSLIWTCNACDCKM----QDHLDQMKAVSAPKPEAGDAPEATKXXXXXXKTAEVPSPAANSVE 198
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: UPI00162E12E0 (probable ubiquitin-conjugating enzyme E2 33 n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=UPI00162E12E0) HSP 1 Score: 65.5 bits (158), Expect = 1.390e-10 Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 10 RICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRH--RFFPE 228
RICLS S++H E+W P W+V+S++T L++ M + A+ GS+ T +K++ A SR++ C + C H + FPE
Sbjct: 13 RICLSMSDFHPESWNPMWSVASILTGLLSFMMDDALTTGSITS-TDGEKKRLAKASRAYNCESKKCLHFRKLFPE 86
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: F0XY27_AURAN (UBC core domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY27_AURAN) HSP 1 Score: 64.7 bits (156), Expect = 3.360e-10 Identity = 28/61 (45.90%), Postives = 44/61 (72.13%), Query Frame = 1
Query: 10 RICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFEC 192
R+CLS S++H E+W P W+VS+++T L + M E + +GSV+ ATP+Q+R+ A +S F C
Sbjct: 85 RLCLSMSDFHPESWNPMWSVSTILTGLYSFMLESSPTLGSVE-ATPAQRRRFAAQSLEFNC 144
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: R7QED2_CHOCR (UBC core domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QED2_CHOCR) HSP 1 Score: 67.0 bits (162), Expect = 4.250e-10 Identity = 37/104 (35.58%), Postives = 54/104 (51.92%), Query Frame = 1
Query: 1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVR-SRSFECTACGCRHRFFPEDHFPKPKGL---GEVETGRMFSPAVDT 300
VG RICLS + +HQETWQPSW + +++TALV M A +G++ P + R+ R S F C CG P + P + + R+ P+VD+
Sbjct: 145 VGKRICLSVTAHHQETWQPSWGIRTILTALVGFMPSKAEGVGALD--YPDEDRRGLARKSHGFRCERCGA----LPVEQLPPREPCPPTSDALASRVDRPSVDS 242 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48907.12061.1 >prot_H-elongata_contig48907.12061.1 ID=prot_H-elongata_contig48907.12061.1|Name=mRNA_H-elongata_contig48907.12061.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSback to top mRNA from alignment at H-elongata_contig48907:2776..3237+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48907.12061.1 ID=mRNA_H-elongata_contig48907.12061.1|Name=mRNA_H-elongata_contig48907.12061.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=462bp|location=Sequence derived from alignment at H-elongata_contig48907:2776..3237+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48907:2776..3237+ >mRNA_H-elongata_contig48907.12061.1 ID=mRNA_H-elongata_contig48907.12061.1|Name=mRNA_H-elongata_contig48907.12061.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig48907:2776..3237+ (Himanthalia elongata Himel1 dioecious)back to top |