prot_H-elongata_contig48907.12061.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig48907.12061.1
Unique Nameprot_H-elongata_contig48907.12061.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length154
Homology
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A6H5L7D8_9PHAE (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7D8_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 4.350e-56
Identity = 107/162 (66.05%), Postives = 116/162 (71.60%), Query Frame = 0
Query:    1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGL-----------GEVETGRMFSPAVDTIEAGAVASTRSDGSRALAGQSRLSLTVRLMKSKPFLVFLALILASIFLNQP 151
            VGSRICLSASEYHQETWQPSWTV+SLV+ALVAHMTE AVEIG+V+GATPSQKRKAAV+SRSF C ACGC H  FPED FP PKG            G     R    AV   EA A A TR      L G+SRLS TVRLM SKPFL+ L LI+AS+FLNQP
Sbjct:  129 VGSRICLSASEYHQETWQPSWTVASLVSALVAHMTEAAVEIGAVRGATPSQKRKAAVKSRSFVCAACGCCHDAFPEDRFPIPKGFDKGKKAGAGADGSAGARREARVAVGVGEAPAAA-TRGG----LTGRSRLSWTVRLMTSKPFLLALTLIIASVFLNQP 285          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A4D9CVX3_9STRA (UBC core domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVX3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.200e-17
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 0
Query:    1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGLGEV 88
            VG+ ICLSA+ +HQETWQP WTV +LV+AL +HM  PAVE+G ++  +  +++  A RSR F C  CG  H  FP   F     +GEV
Sbjct:   81 VGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGME-CSARRRKFLARRSRGFLCRGCGVDHSNFPGRIFRSLPEVGEV 167          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: W7TJJ9_9STRA (Ubiquitin-conjugating enzyme e2 j1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJJ9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.280e-17
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 0
Query:    1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGLGEV 88
            VG+ ICLSA+ +HQETWQP WTV +LV+AL +HM  PAVE+G ++  +  +++  A RSR F C  CG  H  FP   F     +GEV
Sbjct:  145 VGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGME-CSARRRKFLARRSRGFLCRGCGVDHSNFPGRVFRSLPEVGEV 231          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A2V3INT9_9FLOR (Ubiquitin-conjugating enzyme E2 J1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INT9_9FLOR)

HSP 1 Score: 76.3 bits (186), Expect = 1.470e-13
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 0
Query:    1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGLGEVETGRMFSPAV 98
            VG RICLS + +HQETWQPSW + +++TAL+  M  PA  +G++       +R+ A RS  F C  CG R    P DH P          G++ S A+
Sbjct:   84 VGKRICLSVTAHHQETWQPSWGIRTILTALIGFMPSPAEGVGALDY-PDDDRRRLARRSHLFHCGRCGSR----PVDHLPPMTQTCSPANGKIQSKAL 176          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A5J4Z378_PORPP (Ubiquitin-conjugating enzyme E2 J1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z378_PORPP)

HSP 1 Score: 73.6 bits (179), Expect = 1.090e-12
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 0
Query:    1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKA-AVRSRSFECTACGCRHRFFPED 77
            VG+RICLS + +HQETWQPSW + +++TAL+  M   A  +GS+    P++ R+A A +S +F+C  CGC+ +   ED
Sbjct:   88 VGTRICLSITSHHQETWQPSWGIRTILTALIGFMPSKAEGLGSLN--FPAEDRRALAAKSIAFQCPICGCKVKELFED 163          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A3F2RXI9_9STRA (UBC core domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXI9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 9.730e-11
Identity = 39/100 (39.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query:    1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGLGEVETGRMFSPAVDT 100
               R+CLS S++H ETW P W+VSS++T L + M E    +GS+   T +QKRK A  S    CT    R + FP+    + +   E E  R  SPA +T
Sbjct:   82 TNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLETQATLGSIS-TTDAQKRKYAAASLEANCTNATFR-KLFPDLVTLQEQRDKEQELLRKLSPAGET 179          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: A0A7E4VBD2_PANRE (UBC core domain-containing protein n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4VBD2_PANRE)

HSP 1 Score: 68.2 bits (165), Expect = 1.070e-10
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 0
Query:    1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAV-EIGSVQGATPSQKRKAAVRSRSFECTACGCRHRFFPEDHF--------PKPKGLGEVE----------TGRMFSPAVDTIE 102
              ++ICLS S+YH ETWQPSW++ + + AL+A M+ P++  +GS++  +  Q++  A +S  + C AC C+     +DH         PKP+     E          T  + SPA +++E
Sbjct:   83 TNTKICLSISDYHPETWQPSWSIGTALVALIAFMSTPSLGAVGSIE-TSDEQRKILAKKSLIWTCNACDCKM----QDHLDQMKAVSAPKPEAGDAPEATKXXXXXXKTAEVPSPAANSVE 198          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: UPI00162E12E0 (probable ubiquitin-conjugating enzyme E2 33 n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=UPI00162E12E0)

HSP 1 Score: 65.5 bits (158), Expect = 1.390e-10
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 0
Query:    4 RICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFECTACGCRH--RFFPE 76
            RICLS S++H E+W P W+V+S++T L++ M + A+  GS+   T  +K++ A  SR++ C +  C H  + FPE
Sbjct:   13 RICLSMSDFHPESWNPMWSVASILTGLLSFMMDDALTTGSITS-TDGEKKRLAKASRAYNCESKKCLHFRKLFPE 86          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: F0XY27_AURAN (UBC core domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY27_AURAN)

HSP 1 Score: 64.7 bits (156), Expect = 3.360e-10
Identity = 28/61 (45.90%), Postives = 44/61 (72.13%), Query Frame = 0
Query:    4 RICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVRSRSFEC 64
            R+CLS S++H E+W P W+VS+++T L + M E +  +GSV+ ATP+Q+R+ A +S  F C
Sbjct:   85 RLCLSMSDFHPESWNPMWSVSTILTGLYSFMLESSPTLGSVE-ATPAQRRRFAAQSLEFNC 144          
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Match: R7QED2_CHOCR (UBC core domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QED2_CHOCR)

HSP 1 Score: 67.0 bits (162), Expect = 4.250e-10
Identity = 37/104 (35.58%), Postives = 54/104 (51.92%), Query Frame = 0
Query:    1 VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPSQKRKAAVR-SRSFECTACGCRHRFFPEDHFPKPKGL---GEVETGRMFSPAVDT 100
            VG RICLS + +HQETWQPSW + +++TALV  M   A  +G++    P + R+   R S  F C  CG      P +  P  +      +    R+  P+VD+
Sbjct:  145 VGKRICLSVTAHHQETWQPSWGIRTILTALVGFMPSKAEGVGALD--YPDEDRRGLARKSHGFRCERCGA----LPVEQLPPREPCPPTSDALASRVDRPSVDS 242          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48907.12061.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7D8_9PHAE4.350e-5666.05UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A4D9CVX3_9STRA1.200e-1748.86UBC core domain-containing protein n=1 Tax=Nannoch... [more]
W7TJJ9_9STRA3.280e-1748.86Ubiquitin-conjugating enzyme e2 j1 n=2 Tax=Nannoch... [more]
A0A2V3INT9_9FLOR1.470e-1339.80Ubiquitin-conjugating enzyme E2 J1 n=1 Tax=Gracila... [more]
A0A5J4Z378_PORPP1.090e-1244.87Ubiquitin-conjugating enzyme E2 J1 n=1 Tax=Porphyr... [more]
A0A3F2RXI9_9STRA9.730e-1139.00UBC core domain-containing protein n=3 Tax=Phytoph... [more]
A0A7E4VBD2_PANRE1.070e-1032.23UBC core domain-containing protein n=1 Tax=Panagre... [more]
UPI00162E12E01.390e-1040.00probable ubiquitin-conjugating enzyme E2 33 n=1 Ta... [more]
F0XY27_AURAN3.360e-1045.90UBC core domain-containing protein (Fragment) n=1 ... [more]
R7QED2_CHOCR4.250e-1035.58UBC core domain-containing protein n=1 Tax=Chondru... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10coord: 1..83
e-value: 2.5E-15
score: 58.4
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 2..72
NoneNo IPR availablePANTHERPTHR24068FAMILY NOT NAMEDcoord: 3..81
NoneNo IPR availablePANTHERPTHR24068:SF135UBIQUITIN-CONJUGATING ENZYME E2 J2coord: 3..81
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..134
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 135..152
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 153..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48907contigH-elongata_contig48907:2776..3237 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48907.12061.1mRNA_H-elongata_contig48907.12061.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig48907 2776..3237 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig48907.12061.1 ID=prot_H-elongata_contig48907.12061.1|Name=mRNA_H-elongata_contig48907.12061.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
VGSRICLSASEYHQETWQPSWTVSSLVTALVAHMTEPAVEIGSVQGATPS
QKRKAAVRSRSFECTACGCRHRFFPEDHFPKPKGLGEVETGRMFSPAVDT
IEAGAVASTRSDGSRALAGQSRLSLTVRLMKSKPFLVFLALILASIFLNQ
PSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD