mRNA_H-elongata_contig48864.12057.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48864.12057.1
Unique NamemRNA_H-elongata_contig48864.12057.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig48864.12057.1 vs. uniprot
Match: D7FSX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX9_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.530e-8
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 AEGDYVVVKGVKLRHGRGHFVNGKERYNGQWQHDSMHGQGE 123
            +EG Y+V+ GVK R+G G   NGK++Y G+WQ DSMHGQGE
Sbjct:   17 SEGQYIVIDGVKKRNGFGTHTNGKDKYIGEWQLDSMHGQGE 57
[Close]
BLAST of mRNA_H-elongata_contig48864.12057.1 vs. uniprot
Match: A0A6A4YZ78_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YZ78_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 5.300e-6
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:    4 EGDYVVVKGVKLRHGRGHFVNGKERYNGQWQHDSMHGQG 120
            +GDY     V +RHGRG F+NG E+YNG W  D M G+G
Sbjct:   18 DGDYQSFNQVVMRHGRGTFINGPEKYNGSWHKDQMEGKG 56
[Close]
BLAST of mRNA_H-elongata_contig48864.12057.1 vs. uniprot
Match: A0A397CRG5_9STRA (Copper transport protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CRG5_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 1.620e-5
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:    4 EGDYVVVKGVKLRHGRGHFVNGKERYNGQWQHDSMHGQG 120
            +GDY     V +RHGRG F+NG E+YNG W  D M G+G
Sbjct:   30 DGDYQSFNQVVMRHGRGTFINGPEKYNGSWHKDQMEGKG 68
[Close]
BLAST of mRNA_H-elongata_contig48864.12057.1 vs. uniprot
Match: A0A3R7WM22_9STRA (Copper transport protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7WM22_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.490e-5
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:    4 EGDYVVVKGVKLRHGRGHFVNGKERYNGQWQHDSMHGQGER 126
            +GDY     V +RHGRG F+NG E+YNG W  D M G+ ER
Sbjct:   18 DGDYQSFNQVVMRHGRGTFINGPEKYNGSWHKDQMEGKVER 58
[Close]
BLAST of mRNA_H-elongata_contig48864.12057.1 vs. uniprot
Match: A0A7S3SY57_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SY57_9SPIT)

HSP 1 Score: 46.2 bits (108), Expect = 8.040e-5
Identity = 19/42 (45.24%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    4 EGDYVVVKGVKLRHGRGHFVNG---KERYNGQWQHDSMHGQG 120
            +GD+++V GV+ RHG G +++G    + Y G+WQ+D MHG+G
Sbjct:   36 DGDWIIVDGVRQRHGHGLYIDGIVKGQSYQGEWQNDKMHGRG 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48864.12057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FSX9_ECTSI1.530e-860.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6A4YZ78_9STRA5.300e-653.85Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397CRG5_9STRA1.620e-553.85Copper transport protein n=3 Tax=Aphanomyces astac... [more]
A0A3R7WM22_9STRA2.490e-553.66Copper transport protein n=3 Tax=Aphanomyces astac... [more]
A0A7S3SY57_9SPIT8.040e-545.24Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48864contigH-elongata_contig48864:57..182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-27_006760.1
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930804.5371647-CDS-H-elongata_contig48864:56..1821622930804.5371647-CDS-H-elongata_contig48864:56..182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48864 57..182 +
1691679577.5373328-CDS-H-elongata_contig48864:56..1821691679577.5373328-CDS-H-elongata_contig48864:56..182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48864 57..182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48864.12057.1prot_H-elongata_contig48864.12057.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48864 57..182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48864.12057.1

>prot_H-elongata_contig48864.12057.1 ID=prot_H-elongata_contig48864.12057.1|Name=mRNA_H-elongata_contig48864.12057.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
AEGDYVVVKGVKLRHGRGHFVNGKERYNGQWQHDSMHGQGER
back to top

mRNA from alignment at H-elongata_contig48864:57..182+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48864.12057.1 ID=mRNA_H-elongata_contig48864.12057.1|Name=mRNA_H-elongata_contig48864.12057.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig48864:57..182+ (Himanthalia elongata Himel1 dioecious)
GCAGAGGGAGACTACGTGGTGGTGAAAGGCGTCAAGCTACGCCACGGACG
CGGACATTTCGTGAATGGCAAGGAACGATATAACGGACAGTGGCAGCACG
ACTCAATGCATGGACAAGGTGAGAGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig48864:57..182+

>mRNA_H-elongata_contig48864.12057.1 ID=mRNA_H-elongata_contig48864.12057.1|Name=mRNA_H-elongata_contig48864.12057.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig48864:57..182+ (Himanthalia elongata Himel1 dioecious)
GCAGAGGGAGACTACGTGGTGGTGAAAGGCGTCAAGCTACGCCACGGACG
CGGACATTTCGTGAATGGCAAGGAACGATATAACGGACAGTGGCAGCACG
ACTCAATGCATGGACAAGGTGAGAGAGCAGAGGGAGACTACGTGGTGGTG
AAAGGCGTCAAGCTACGCCACGGACGCGGACATTTCGTGAATGGCAAGGA
ACGATATAACGGACAGTGGCAGCACGACTCAATGCATGGACAAGGTGAGA
GA
back to top