mRNA_H-elongata_contig115152.1205.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: D8LCF0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCF0_ECTSI) HSP 1 Score: 368 bits (944), Expect = 2.870e-127 Identity = 186/210 (88.57%), Postives = 199/210 (94.76%), Query Frame = 1
Query: 19 NEQTAAVKKDEIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
+++ AA KK EIF+RAERYVKEYR QEND+IRFRREAKA GNI+VPAEA VV+V+RIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAAT+KMLRLVEPY+AYGYPNLKTVRELIYKRGFGKV KQRIPISDNSV+EG+LGK GIICVEDLIHEIYTVGP FK ANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKIN L+KRML
Sbjct: 38 DQKAAAAKKTEIFERAERYVKEYRAQENDSIRFRREAKAAGNIHVPAEAGVVIVVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEGTLGKAGIICVEDLIHEIYTVGPNFKAANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINALIKRML 247
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: A0A836CG85_9STRA (Ribosomal protein L30, ferredoxin-like fold domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG85_9STRA) HSP 1 Score: 313 bits (801), Expect = 1.280e-105 Identity = 155/205 (75.61%), Postives = 180/205 (87.80%), Query Frame = 1
Query: 34 AVKKDEIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
A K+ E+F RA++Y +EY D + AI RR AK GN YVPAEAK+ +VIRIRGIIGV PKVRKILQLLRLRQINN+VFVKLNAATIKMLRLVEPYIAYGYPNLKT+++L+YKRGFGKV+K RIPISDNSV+EG LGK+GI+ V+DLIHEIYTVGP FK+ANNFLWPFKLSNP GGF QKLLHFNEGG+AGQRG +IN +++ M+
Sbjct: 35 AAKRKELFVRAQKYEQEYNDADKAAIDLRRAAKKEGNFYVPAEAKLAVVIRIRGIIGVGPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTIKQLVYKRGFGKVRKSRIPISDNSVIEGVLGKYGIVGVDDLIHEIYTVGPHFKEANNFLWPFKLSNPTGGFTQKLLHFNEGGEAGQRGEEINKMIRLMV 239
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: A0A7S2WW50_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW50_9STRA) HSP 1 Score: 310 bits (793), Expect = 3.770e-104 Identity = 157/213 (73.71%), Postives = 179/213 (84.04%), Query Frame = 1
Query: 10 KLPNEQTAAVKKDEIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
K E AA K+++ KRAE YV EY+ ENDAIR RREAK G+ YVP E K+ V+RIRGIIGVSPKVRKILQLLRLRQI+N VFVKLN+ATIKMLRLVEPYIAYGYPNLK+ REL+ KRGFGKV KQRI ISDNSV+E LGK+ IICVEDLIHEIYTVGP FK+A+NFLWP KLS+P GGF +KL+HFNEGG+AG RG KINGL+K+M+
Sbjct: 44 KAAAELKAAENKEQMLKRAETYVNEYKQMENDAIRLRREAKVAGSYYVPEEPKLAFVVRIRGIIGVSPKVRKILQLLRLRQIHNGVFVKLNSATIKMLRLVEPYIAYGYPNLKSTRELVLKRGFGKVNKQRIAISDNSVIEQVLGKYDIICVEDLIHEIYTVGPHFKEASNFLWPMKLSSPKGGFSRKLIHFNEGGEAGLRGDKINGLIKQMI 256
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: A0A7S3V109_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V109_9STRA) HSP 1 Score: 308 bits (790), Expect = 6.030e-104 Identity = 152/204 (74.51%), Postives = 179/204 (87.75%), Query Frame = 1
Query: 37 VKKDEIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
VK+ + FKRAE+YVKEY+ END +R +R AK+ GN+YV E+K+++ RIRGIIG+SPKVRKILQLLRLRQI+N+VF+K N ATI MLRLVEP++AYGYP+LKTVREL+YKRGFGKV KQRIPI+DNSV+E LGK IICVEDLIHEIYTVGP FK A NFLWPFKLS+PNGGF++KLLHFNEGGDAG RGAKIN L+KRM+
Sbjct: 36 VKRSKAFKRAEQYVKEYKAAENDLVRLKRVAKSEGNLYVEPESKLIVATRIRGIIGISPKVRKILQLLRLRQIHNTVFLKANKATINMLRLVEPFVAYGYPSLKTVRELVYKRGFGKVNKQRIPIADNSVIEEVLGKKDIICVEDLIHEIYTVGPNFKAAANFLWPFKLSSPNGGFKRKLLHFNEGGDAGNRGAKINALIKRMI 239
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: A0A7S4E8W3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8W3_9STRA) HSP 1 Score: 300 bits (767), Expect = 1.840e-100 Identity = 148/203 (72.91%), Postives = 174/203 (85.71%), Query Frame = 1
Query: 40 KKDEIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
KKD IFKRAE+Y EY+ QENDAIR RREAK +IYVP EAK+ VIRIRGIIG+SPKV+KILQLLRLRQ+++ VFVKLN +TIKMLRLVEPYIAYG PNLKTVREL+YKRG+GKV KQR+PI +N+VVE LGK+ I+CVED+IHE+YT GP FK+ NFLWP KLS+P GGF+ KLLH+NEGGDAG RG KI+ LVK+M+
Sbjct: 36 KKDVIFKRAEKYAAEYKQQENDAIRLRREAKKANSIYVPPEAKLAFVIRIRGIIGMSPKVKKILQLLRLRQLHSGVFVKLNGSTIKMLRLVEPYIAYGTPNLKTVRELVYKRGYGKVNKQRVPIDNNAVVEQVLGKYDIVCVEDVIHELYTTGPHFKEVANFLWPCKLSSPTGGFKMKLLHYNEGGDAGDRGEKIHELVKKMI 238
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: A0A4D9CRP3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRP3_9STRA) HSP 1 Score: 293 bits (751), Expect = 4.820e-98 Identity = 147/215 (68.37%), Postives = 174/215 (80.93%), Query Frame = 1
Query: 4 AIKLPNEQTAAVKKDEIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
A K ++ A K+ E KRAE+Y+ EY+ END IR RREAKA G YVPAEAKV V+RIRGI GVSPKV+KILQLLRLRQI+N VF+KLN +T+ +LR VEPYIAYGYPNLK+VRELIYKRG+ KV KQR+P++DN++VE LGK+G+ICVEDLIHEIYTVGP FKQA NFLWPFKLS+P GG++ K HF EGGDAG RG KIN +K +L
Sbjct: 23 AEKAAAKKAARAKRGETVKRAEKYMNEYKKLENDQIRLRREAKASGAFYVPAEAKVAFVMRIRGINGVSPKVKKILQLLRLRQIHNGVFIKLNGSTVNLLRWVEPYIAYGYPNLKSVRELIYKRGYAKVNKQRLPLTDNTLVEQELGKYGLICVEDLIHEIYTVGPHFKQAANFLWPFKLSSPKGGYKDKKTHFIEGGDAGARGDKINAFIKAVL 237
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: A0A7S1G5B0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5B0_9STRA) HSP 1 Score: 293 bits (751), Expect = 5.340e-98 Identity = 151/212 (71.23%), Postives = 176/212 (83.02%), Query Frame = 1
Query: 31 AAVKKD------EIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
AAV++D E FKRAE+YVKEYR +E +R RR+AK GN +V E K+ LV+RIRGI+GVSPKVRKILQLLRLRQINN+VFV++N AT ML +VEPYIA+GYPNLKTVREL+YKRGFGKV KQRIP++DNSV+EG LGK IICVEDL+HEI TVGP FK+ANNFLWPFKLS+P GGF +KL HFNEGG+AG R KIN LV+RML
Sbjct: 29 AAVRRDAKKNRTEAFKRAEKYVKEYRAEERSLLRLRRQAKKAGNFFVEPEGKLALVVRIRGIMGVSPKVRKILQLLRLRQINNAVFVRINKATRNMLTIVEPYIAWGYPNLKTVRELVYKRGFGKVNKQRIPLTDNSVIEGVLGKKDIICVEDLVHEITTVGPAFKEANNFLWPFKLSSPLGGFSKKLRHFNEGGEAGCREDKINALVQRML 240
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: A0A2D4BFA6_PYTIN (Uncharacterized protein n=3 Tax=Pythium TaxID=4797 RepID=A0A2D4BFA6_PYTIN) HSP 1 Score: 292 bits (748), Expect = 1.530e-97 Identity = 144/198 (72.73%), Postives = 168/198 (84.85%), Query Frame = 1
Query: 55 FKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
FK AE+YVKEYR E + RR+AK+ GN YVPAEAK+ VIRIRGIIGVSPKVRKILQL RLRQI N VFVKLN ATI MLRLVEP++ YGYPNLKT RELIYKRGFGKV+ QRI ++DNS++E SLG GIIC+EDLIHEI+TVGP FK+A+NFLWPF+LS+PNGG++QKLLHF EGGDAG RG +IN +K++L
Sbjct: 43 FKSAEKYVKEYRQIEKQNVLLRRQAKSTGNFYVPAEAKLAFVIRIRGIIGVSPKVRKILQLFRLRQIQNGVFVKLNKATINMLRLVEPFVTYGYPNLKTTRELIYKRGFGKVRGQRIALTDNSIIEKSLGHHGIICIEDLIHEIFTVGPHFKEASNFLWPFQLSSPNGGYKQKLLHFCEGGDAGNRGEEINKFIKKVL 240
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: UPI001F045B80 (60S ribosomal protein L7-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F045B80) HSP 1 Score: 292 bits (748), Expect = 1.690e-97 Identity = 144/198 (72.73%), Postives = 169/198 (85.35%), Query Frame = 1
Query: 52 IFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRM 645
IFKRAE+YVKEYR +E+D IR +R AK GN YVP+EAK+ VIRIRGI GVSP+VRKILQL RL QINN VFVKLN AT+ ML +++PY+A+GYPNLK+VRELIYKRGF K+ KQRIPI+DNS++E SLGKFGIICVEDLIHEI+T+GP FK+ANNFLWPFKLSNP GG R+K HF EGGD G R KINGL+++M
Sbjct: 45 IFKRAEQYVKEYRLKEHDEIRMKRMAKQFGNFYVPSEAKLAFVIRIRGINGVSPRVRKILQLFRLLQINNGVFVKLNKATLNMLNIIQPYVAFGYPNLKSVRELIYKRGFVKINKQRIPITDNSLIEESLGKFGIICVEDLIHEIFTIGPHFKEANNFLWPFKLSNPTGGLRKKRNHFVEGGDFGNREDKINGLIRKM 242
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: F0XYU4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYU4_AURAN) HSP 1 Score: 291 bits (745), Expect = 4.080e-97 Identity = 147/203 (72.41%), Postives = 172/203 (84.73%), Query Frame = 1
Query: 40 KKDEIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
KK+ FKRAE+Y+ EY+ ENDAIR RREAKA +IYVP E K+ VIRIRGIIG+SPKV+KILQLLRLRQ+++ VFVKL AT KMLRLVEPYIAYG PNLK+VRE IYKRG+GKV K+R+PI +N+VVE LGK+ IICVEDLIHEIYTVGP F++A NFLWP KLS+P GGF+ KLLH+NEGGDAG RG KI+ LVK+ML
Sbjct: 36 KKEVTFKRAEKYMAEYKAAENDAIRLRREAKAANSIYVPPEGKLAFVIRIRGIIGMSPKVKKILQLLRLRQLHSGVFVKLTGATTKMLRLVEPYIAYGEPNLKSVRECIYKRGYGKVNKKRVPIDNNAVVEDVLGKYDIICVEDLIHEIYTVGPHFREAANFLWPVKLSSPTGGFKAKLLHYNEGGDAGYRGEKIHELVKKML 238 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig115152.1205.1 >prot_H-elongata_contig115152.1205.1 ID=prot_H-elongata_contig115152.1205.1|Name=mRNA_H-elongata_contig115152.1205.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp SAIKLPNEQTAAVKKDEIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYback to top mRNA from alignment at H-elongata_contig115152:714..1364+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig115152.1205.1 ID=mRNA_H-elongata_contig115152.1205.1|Name=mRNA_H-elongata_contig115152.1205.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=651bp|location=Sequence derived from alignment at H-elongata_contig115152:714..1364+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig115152:714..1364+ >mRNA_H-elongata_contig115152.1205.1 ID=mRNA_H-elongata_contig115152.1205.1|Name=mRNA_H-elongata_contig115152.1205.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1302bp|location=Sequence derived from alignment at H-elongata_contig115152:714..1364+ (Himanthalia elongata Himel1 dioecious)back to top |